Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04510

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04505 and CSW01_04510 are separated by 134 nucleotidesCSW01_04510 and CSW01_04515 overlap by 4 nucleotidesCSW01_04515 and CSW01_04520 are separated by 200 nucleotides CSW01_04505: CSW01_04505 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 938,534 to 939,229 _04505 CSW01_04510: CSW01_04510 - 50S ribosomal protein L31 type B, at 939,364 to 939,621 _04510 CSW01_04515: CSW01_04515 - 50S ribosomal protein L36, at 939,618 to 939,743 _04515 CSW01_04520: CSW01_04520 - aminobenzoyl-glutamate transporter, at 939,944 to 941,530 _04520 Position (kb) 939 940Strain fitness (log2 ratio) -2 -1 0 1 2at 938.563 kb on - strandat 938.621 kb on + strand, within CSW01_04505at 938.681 kb on + strand, within CSW01_04505at 938.689 kb on - strand, within CSW01_04505at 938.736 kb on + strand, within CSW01_04505at 938.858 kb on - strand, within CSW01_04505at 938.886 kb on - strand, within CSW01_04505at 939.037 kb on + strand, within CSW01_04505at 939.045 kb on - strand, within CSW01_04505at 939.077 kb on - strand, within CSW01_04505at 939.105 kb on + strand, within CSW01_04505at 939.115 kb on - strand, within CSW01_04505at 939.115 kb on - strand, within CSW01_04505at 939.440 kb on + strand, within CSW01_04510at 939.440 kb on + strand, within CSW01_04510at 939.466 kb on + strand, within CSW01_04510at 939.474 kb on - strand, within CSW01_04510at 939.526 kb on - strand, within CSW01_04510at 939.526 kb on - strand, within CSW01_04510at 939.536 kb on - strand, within CSW01_04510at 939.634 kb on - strand, within CSW01_04515at 939.730 kb on - strand, within CSW01_04515at 939.730 kb on - strand, within CSW01_04515at 939.730 kb on - strand, within CSW01_04515at 939.730 kb on - strand, within CSW01_04515at 939.920 kb on + strandat 939.938 kb on + strandat 939.946 kb on - strandat 939.946 kb on - strandat 940.039 kb on - strandat 940.039 kb on - strandat 940.104 kb on + strand, within CSW01_04520at 940.118 kb on + strand, within CSW01_04520at 940.194 kb on - strand, within CSW01_04520at 940.200 kb on + strand, within CSW01_04520at 940.200 kb on + strand, within CSW01_04520at 940.208 kb on - strand, within CSW01_04520at 940.208 kb on - strand, within CSW01_04520at 940.208 kb on - strand, within CSW01_04520at 940.234 kb on - strand, within CSW01_04520at 940.250 kb on + strand, within CSW01_04520at 940.250 kb on + strand, within CSW01_04520at 940.258 kb on - strand, within CSW01_04520at 940.258 kb on - strand, within CSW01_04520at 940.258 kb on - strand, within CSW01_04520at 940.304 kb on + strand, within CSW01_04520at 940.312 kb on - strand, within CSW01_04520at 940.312 kb on - strand, within CSW01_04520at 940.341 kb on - strand, within CSW01_04520at 940.352 kb on - strand, within CSW01_04520at 940.414 kb on - strand, within CSW01_04520at 940.445 kb on - strand, within CSW01_04520at 940.469 kb on - strand, within CSW01_04520at 940.469 kb on - strand, within CSW01_04520at 940.531 kb on + strand, within CSW01_04520at 940.608 kb on + strand, within CSW01_04520

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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938,563 - -0.4
938,621 + CSW01_04505 0.12 -0.7
938,681 + CSW01_04505 0.21 +1.3
938,689 - CSW01_04505 0.22 +0.5
938,736 + CSW01_04505 0.29 +0.4
938,858 - CSW01_04505 0.47 -0.1
938,886 - CSW01_04505 0.51 +0.2
939,037 + CSW01_04505 0.72 +0.5
939,045 - CSW01_04505 0.73 +0.8
939,077 - CSW01_04505 0.78 -1.4
939,105 + CSW01_04505 0.82 -0.3
939,115 - CSW01_04505 0.83 -1.4
939,115 - CSW01_04505 0.83 +0.3
939,440 + CSW01_04510 0.29 +0.2
939,440 + CSW01_04510 0.29 +0.2
939,466 + CSW01_04510 0.40 +0.6
939,474 - CSW01_04510 0.43 +0.3
939,526 - CSW01_04510 0.63 +0.3
939,526 - CSW01_04510 0.63 +0.9
939,536 - CSW01_04510 0.67 -0.0
939,634 - CSW01_04515 0.13 -0.7
939,730 - CSW01_04515 0.89 -0.4
939,730 - CSW01_04515 0.89 -0.6
939,730 - CSW01_04515 0.89 +0.4
939,730 - CSW01_04515 0.89 -0.2
939,920 + +0.7
939,938 + +0.3
939,946 - +0.1
939,946 - -0.0
940,039 - -0.4
940,039 - +0.0
940,104 + CSW01_04520 0.10 -1.0
940,118 + CSW01_04520 0.11 -0.6
940,194 - CSW01_04520 0.16 +1.0
940,200 + CSW01_04520 0.16 +0.1
940,200 + CSW01_04520 0.16 -0.4
940,208 - CSW01_04520 0.17 -0.2
940,208 - CSW01_04520 0.17 +0.4
940,208 - CSW01_04520 0.17 -0.3
940,234 - CSW01_04520 0.18 -2.4
940,250 + CSW01_04520 0.19 -0.5
940,250 + CSW01_04520 0.19 +0.1
940,258 - CSW01_04520 0.20 -0.2
940,258 - CSW01_04520 0.20 -0.1
940,258 - CSW01_04520 0.20 +0.2
940,304 + CSW01_04520 0.23 +0.0
940,312 - CSW01_04520 0.23 -0.0
940,312 - CSW01_04520 0.23 +2.0
940,341 - CSW01_04520 0.25 -0.0
940,352 - CSW01_04520 0.26 +0.0
940,414 - CSW01_04520 0.30 +0.9
940,445 - CSW01_04520 0.32 +0.5
940,469 - CSW01_04520 0.33 -2.1
940,469 - CSW01_04520 0.33 +0.5
940,531 + CSW01_04520 0.37 +0.3
940,608 + CSW01_04520 0.42 +0.3

Or see this region's nucleotide sequence