Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04010

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04005 and CSW01_04010 are separated by 10 nucleotidesCSW01_04010 and CSW01_04015 are separated by 167 nucleotidesCSW01_04015 and CSW01_04020 are separated by 11 nucleotides CSW01_04005: CSW01_04005 - 2,3-dihydroxybenzoate-AMP ligase, at 825,926 to 827,557 _04005 CSW01_04010: CSW01_04010 - vibriobactin biosynthesis isochorismate synthase, at 827,568 to 828,755 _04010 CSW01_04015: CSW01_04015 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 828,923 to 829,711 _04015 CSW01_04020: CSW01_04020 - vibriobactin biosynthesis amide synthase VibH, at 829,723 to 831,039 _04020 Position (kb) 827 828 829Strain fitness (log2 ratio) -2 -1 0 1 2at 826.584 kb on + strand, within CSW01_04005at 826.639 kb on - strand, within CSW01_04005at 826.657 kb on + strand, within CSW01_04005at 826.686 kb on + strand, within CSW01_04005at 826.691 kb on + strand, within CSW01_04005at 826.694 kb on - strand, within CSW01_04005at 826.699 kb on - strand, within CSW01_04005at 826.771 kb on + strand, within CSW01_04005at 826.783 kb on + strand, within CSW01_04005at 826.849 kb on - strand, within CSW01_04005at 826.849 kb on - strand, within CSW01_04005at 826.867 kb on + strand, within CSW01_04005at 826.959 kb on - strand, within CSW01_04005at 827.042 kb on - strand, within CSW01_04005at 827.092 kb on + strand, within CSW01_04005at 827.102 kb on + strand, within CSW01_04005at 827.102 kb on + strand, within CSW01_04005at 827.107 kb on + strand, within CSW01_04005at 827.107 kb on + strand, within CSW01_04005at 827.107 kb on + strand, within CSW01_04005at 827.107 kb on + strand, within CSW01_04005at 827.143 kb on - strand, within CSW01_04005at 827.149 kb on + strand, within CSW01_04005at 827.184 kb on + strand, within CSW01_04005at 827.192 kb on - strand, within CSW01_04005at 827.192 kb on - strand, within CSW01_04005at 827.315 kb on + strand, within CSW01_04005at 827.334 kb on + strand, within CSW01_04005at 827.344 kb on + strand, within CSW01_04005at 827.347 kb on - strand, within CSW01_04005at 827.374 kb on + strand, within CSW01_04005at 827.382 kb on - strand, within CSW01_04005at 827.382 kb on - strand, within CSW01_04005at 827.413 kb on + strandat 827.426 kb on - strandat 827.436 kb on - strandat 827.445 kb on - strandat 827.449 kb on + strandat 827.457 kb on - strandat 827.480 kb on + strandat 827.480 kb on + strandat 827.582 kb on - strandat 827.584 kb on + strandat 827.591 kb on + strandat 827.591 kb on + strandat 827.591 kb on + strandat 827.591 kb on + strandat 827.599 kb on - strandat 827.599 kb on - strandat 827.599 kb on - strandat 827.599 kb on - strandat 827.639 kb on + strandat 827.722 kb on - strand, within CSW01_04010at 827.746 kb on + strand, within CSW01_04010at 827.746 kb on + strand, within CSW01_04010at 827.855 kb on + strand, within CSW01_04010at 827.868 kb on - strand, within CSW01_04010at 827.893 kb on + strand, within CSW01_04010at 827.900 kb on + strand, within CSW01_04010at 827.900 kb on + strand, within CSW01_04010at 827.900 kb on + strand, within CSW01_04010at 827.900 kb on + strand, within CSW01_04010at 827.901 kb on - strand, within CSW01_04010at 827.930 kb on + strand, within CSW01_04010at 827.930 kb on + strand, within CSW01_04010at 827.932 kb on + strand, within CSW01_04010at 827.938 kb on - strand, within CSW01_04010at 827.940 kb on + strand, within CSW01_04010at 827.940 kb on - strand, within CSW01_04010at 827.948 kb on - strand, within CSW01_04010at 827.948 kb on - strand, within CSW01_04010at 827.975 kb on + strand, within CSW01_04010at 827.975 kb on + strand, within CSW01_04010at 827.975 kb on + strand, within CSW01_04010at 827.993 kb on - strand, within CSW01_04010at 828.072 kb on - strand, within CSW01_04010at 828.072 kb on - strand, within CSW01_04010at 828.074 kb on - strand, within CSW01_04010at 828.145 kb on - strand, within CSW01_04010at 828.168 kb on + strand, within CSW01_04010at 828.176 kb on + strand, within CSW01_04010at 828.217 kb on - strand, within CSW01_04010at 828.242 kb on + strand, within CSW01_04010at 828.270 kb on + strand, within CSW01_04010at 828.278 kb on + strand, within CSW01_04010at 828.285 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.343 kb on - strand, within CSW01_04010at 828.343 kb on - strand, within CSW01_04010at 828.365 kb on + strand, within CSW01_04010at 828.365 kb on + strand, within CSW01_04010at 828.373 kb on - strand, within CSW01_04010at 828.373 kb on - strand, within CSW01_04010at 828.373 kb on - strand, within CSW01_04010at 828.444 kb on + strand, within CSW01_04010at 828.444 kb on + strand, within CSW01_04010at 828.452 kb on - strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.523 kb on + strand, within CSW01_04010at 828.531 kb on - strand, within CSW01_04010at 828.541 kb on - strand, within CSW01_04010at 828.541 kb on - strand, within CSW01_04010at 828.564 kb on - strand, within CSW01_04010at 828.586 kb on - strand, within CSW01_04010at 828.635 kb on + strand, within CSW01_04010at 828.645 kb on - strandat 828.692 kb on + strandat 828.752 kb on - strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.986 kb on - strandat 828.986 kb on - strandat 828.986 kb on - strandat 829.119 kb on + strand, within CSW01_04015at 829.127 kb on - strand, within CSW01_04015at 829.137 kb on - strand, within CSW01_04015at 829.137 kb on - strand, within CSW01_04015at 829.169 kb on - strand, within CSW01_04015at 829.192 kb on + strand, within CSW01_04015at 829.283 kb on - strand, within CSW01_04015at 829.283 kb on - strand, within CSW01_04015at 829.301 kb on - strand, within CSW01_04015at 829.330 kb on + strand, within CSW01_04015at 829.333 kb on + strand, within CSW01_04015at 829.338 kb on - strand, within CSW01_04015at 829.362 kb on - strand, within CSW01_04015at 829.362 kb on - strand, within CSW01_04015at 829.362 kb on - strand, within CSW01_04015at 829.364 kb on + strand, within CSW01_04015at 829.439 kb on + strand, within CSW01_04015at 829.440 kb on - strand, within CSW01_04015at 829.447 kb on - strand, within CSW01_04015at 829.490 kb on - strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.526 kb on + strand, within CSW01_04015at 829.526 kb on + strand, within CSW01_04015at 829.534 kb on - strand, within CSW01_04015at 829.534 kb on - strand, within CSW01_04015at 829.534 kb on - strand, within CSW01_04015at 829.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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826,584 + CSW01_04005 0.40 -1.2
826,639 - CSW01_04005 0.44 +0.3
826,657 + CSW01_04005 0.45 -0.5
826,686 + CSW01_04005 0.47 +0.3
826,691 + CSW01_04005 0.47 +0.0
826,694 - CSW01_04005 0.47 -0.0
826,699 - CSW01_04005 0.47 +0.1
826,771 + CSW01_04005 0.52 -0.2
826,783 + CSW01_04005 0.53 +0.1
826,849 - CSW01_04005 0.57 -0.3
826,849 - CSW01_04005 0.57 -0.1
826,867 + CSW01_04005 0.58 +0.3
826,959 - CSW01_04005 0.63 -0.7
827,042 - CSW01_04005 0.68 +0.2
827,092 + CSW01_04005 0.71 +0.2
827,102 + CSW01_04005 0.72 +0.5
827,102 + CSW01_04005 0.72 +0.5
827,107 + CSW01_04005 0.72 +0.8
827,107 + CSW01_04005 0.72 +1.5
827,107 + CSW01_04005 0.72 -0.6
827,107 + CSW01_04005 0.72 +0.5
827,143 - CSW01_04005 0.75 -2.1
827,149 + CSW01_04005 0.75 +0.2
827,184 + CSW01_04005 0.77 +0.3
827,192 - CSW01_04005 0.78 +0.6
827,192 - CSW01_04005 0.78 +0.5
827,315 + CSW01_04005 0.85 +0.7
827,334 + CSW01_04005 0.86 -0.1
827,344 + CSW01_04005 0.87 -0.1
827,347 - CSW01_04005 0.87 +0.1
827,374 + CSW01_04005 0.89 +0.7
827,382 - CSW01_04005 0.89 +0.1
827,382 - CSW01_04005 0.89 +0.6
827,413 + -0.5
827,426 - +0.5
827,436 - -0.5
827,445 - +0.3
827,449 + -0.9
827,457 - +0.1
827,480 + +0.4
827,480 + -0.7
827,582 - +0.2
827,584 + -0.1
827,591 + +0.6
827,591 + +0.1
827,591 + -0.1
827,591 + +0.1
827,599 - -0.1
827,599 - +2.1
827,599 - +0.3
827,599 - -0.2
827,639 + +0.2
827,722 - CSW01_04010 0.13 -0.1
827,746 + CSW01_04010 0.15 -0.2
827,746 + CSW01_04010 0.15 -1.4
827,855 + CSW01_04010 0.24 -0.4
827,868 - CSW01_04010 0.25 +0.5
827,893 + CSW01_04010 0.27 +1.5
827,900 + CSW01_04010 0.28 +0.8
827,900 + CSW01_04010 0.28 +0.6
827,900 + CSW01_04010 0.28 -0.4
827,900 + CSW01_04010 0.28 +1.2
827,901 - CSW01_04010 0.28 +0.5
827,930 + CSW01_04010 0.30 +2.6
827,930 + CSW01_04010 0.30 -0.1
827,932 + CSW01_04010 0.31 +0.8
827,938 - CSW01_04010 0.31 +1.0
827,940 + CSW01_04010 0.31 +0.2
827,940 - CSW01_04010 0.31 +2.5
827,948 - CSW01_04010 0.32 +0.1
827,948 - CSW01_04010 0.32 -0.7
827,975 + CSW01_04010 0.34 +0.3
827,975 + CSW01_04010 0.34 +0.3
827,975 + CSW01_04010 0.34 -0.3
827,993 - CSW01_04010 0.36 -0.2
828,072 - CSW01_04010 0.42 -0.8
828,072 - CSW01_04010 0.42 -0.2
828,074 - CSW01_04010 0.43 -0.7
828,145 - CSW01_04010 0.49 +0.6
828,168 + CSW01_04010 0.51 +0.2
828,176 + CSW01_04010 0.51 -0.1
828,217 - CSW01_04010 0.55 +0.3
828,242 + CSW01_04010 0.57 +0.7
828,270 + CSW01_04010 0.59 -0.5
828,278 + CSW01_04010 0.60 -1.1
828,285 + CSW01_04010 0.60 +1.2
828,325 + CSW01_04010 0.64 +0.1
828,325 + CSW01_04010 0.64 +0.2
828,325 + CSW01_04010 0.64 +0.5
828,325 + CSW01_04010 0.64 +0.5
828,325 + CSW01_04010 0.64 +1.6
828,325 + CSW01_04010 0.64 -0.5
828,325 + CSW01_04010 0.64 +0.1
828,325 + CSW01_04010 0.64 -0.7
828,325 + CSW01_04010 0.64 +0.2
828,325 + CSW01_04010 0.64 -0.2
828,325 + CSW01_04010 0.64 +0.2
828,325 + CSW01_04010 0.64 +0.7
828,325 + CSW01_04010 0.64 -0.2
828,325 + CSW01_04010 0.64 +0.6
828,333 - CSW01_04010 0.64 +0.4
828,333 - CSW01_04010 0.64 +0.5
828,333 - CSW01_04010 0.64 +0.6
828,333 - CSW01_04010 0.64 +0.2
828,333 - CSW01_04010 0.64 -0.2
828,333 - CSW01_04010 0.64 +0.2
828,333 - CSW01_04010 0.64 -0.0
828,333 - CSW01_04010 0.64 +0.5
828,333 - CSW01_04010 0.64 -0.4
828,333 - CSW01_04010 0.64 +0.6
828,335 + CSW01_04010 0.65 +0.4
828,335 + CSW01_04010 0.65 +0.2
828,335 + CSW01_04010 0.65 +1.6
828,335 + CSW01_04010 0.65 +1.3
828,335 + CSW01_04010 0.65 -0.2
828,343 - CSW01_04010 0.65 -0.4
828,343 - CSW01_04010 0.65 +0.2
828,365 + CSW01_04010 0.67 +0.9
828,365 + CSW01_04010 0.67 +0.2
828,373 - CSW01_04010 0.68 +0.6
828,373 - CSW01_04010 0.68 +0.5
828,373 - CSW01_04010 0.68 -0.2
828,444 + CSW01_04010 0.74 -0.1
828,444 + CSW01_04010 0.74 -0.5
828,452 - CSW01_04010 0.74 +0.8
828,467 + CSW01_04010 0.76 -0.4
828,467 + CSW01_04010 0.76 +0.6
828,467 + CSW01_04010 0.76 +0.2
828,467 + CSW01_04010 0.76 -1.5
828,467 + CSW01_04010 0.76 -0.4
828,467 + CSW01_04010 0.76 +0.1
828,467 + CSW01_04010 0.76 -0.1
828,467 + CSW01_04010 0.76 +0.3
828,467 + CSW01_04010 0.76 +1.2
828,467 + CSW01_04010 0.76 +0.2
828,467 + CSW01_04010 0.76 -0.3
828,467 + CSW01_04010 0.76 -0.5
828,467 + CSW01_04010 0.76 -0.0
828,467 + CSW01_04010 0.76 +0.6
828,467 + CSW01_04010 0.76 -0.5
828,467 + CSW01_04010 0.76 +0.7
828,467 + CSW01_04010 0.76 +0.0
828,475 - CSW01_04010 0.76 +0.3
828,475 - CSW01_04010 0.76 -0.1
828,475 - CSW01_04010 0.76 -0.2
828,475 - CSW01_04010 0.76 -0.1
828,475 - CSW01_04010 0.76 -0.0
828,475 - CSW01_04010 0.76 +0.9
828,475 - CSW01_04010 0.76 +0.6
828,475 - CSW01_04010 0.76 -1.4
828,475 - CSW01_04010 0.76 -1.4
828,475 - CSW01_04010 0.76 +0.9
828,475 - CSW01_04010 0.76 -0.6
828,475 - CSW01_04010 0.76 -0.5
828,523 + CSW01_04010 0.80 +0.1
828,531 - CSW01_04010 0.81 +0.4
828,541 - CSW01_04010 0.82 -0.2
828,541 - CSW01_04010 0.82 -0.0
828,564 - CSW01_04010 0.84 -0.1
828,586 - CSW01_04010 0.86 +0.6
828,635 + CSW01_04010 0.90 +0.3
828,645 - +0.7
828,692 + +0.0
828,752 - +0.6
828,978 + +0.2
828,978 + -0.8
828,978 + -0.8
828,978 + +0.4
828,978 + -0.8
828,978 + +0.2
828,986 - -0.2
828,986 - -0.3
828,986 - -0.5
829,119 + CSW01_04015 0.25 -0.0
829,127 - CSW01_04015 0.26 -0.7
829,137 - CSW01_04015 0.27 -0.3
829,137 - CSW01_04015 0.27 -0.1
829,169 - CSW01_04015 0.31 -0.8
829,192 + CSW01_04015 0.34 -0.4
829,283 - CSW01_04015 0.46 -0.8
829,283 - CSW01_04015 0.46 +0.1
829,301 - CSW01_04015 0.48 +0.2
829,330 + CSW01_04015 0.52 +0.5
829,333 + CSW01_04015 0.52 -0.5
829,338 - CSW01_04015 0.53 -0.2
829,362 - CSW01_04015 0.56 +0.1
829,362 - CSW01_04015 0.56 -0.4
829,362 - CSW01_04015 0.56 -0.6
829,364 + CSW01_04015 0.56 -0.4
829,439 + CSW01_04015 0.65 +0.5
829,440 - CSW01_04015 0.66 +0.9
829,447 - CSW01_04015 0.66 -0.3
829,490 - CSW01_04015 0.72 -0.1
829,516 + CSW01_04015 0.75 +0.5
829,516 + CSW01_04015 0.75 -1.6
829,516 + CSW01_04015 0.75 +0.0
829,516 + CSW01_04015 0.75 -0.7
829,516 + CSW01_04015 0.75 +0.6
829,516 + CSW01_04015 0.75 -0.6
829,516 + CSW01_04015 0.75 -1.3
829,516 + CSW01_04015 0.75 +0.7
829,516 + CSW01_04015 0.75 +0.9
829,516 + CSW01_04015 0.75 +0.0
829,524 - CSW01_04015 0.76 +0.4
829,524 - CSW01_04015 0.76 -0.3
829,524 - CSW01_04015 0.76 +1.1
829,524 - CSW01_04015 0.76 -0.2
829,524 - CSW01_04015 0.76 -0.1
829,524 - CSW01_04015 0.76 -0.4
829,524 - CSW01_04015 0.76 +0.1
829,524 - CSW01_04015 0.76 -0.2
829,524 - CSW01_04015 0.76 +0.3
829,526 + CSW01_04015 0.76 -0.5
829,526 + CSW01_04015 0.76 +0.1
829,534 - CSW01_04015 0.77 +0.0
829,534 - CSW01_04015 0.77 +0.8
829,534 - CSW01_04015 0.77 -0.0
829,663 - +0.0

Or see this region's nucleotide sequence