Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03840 and CSW01_03845 overlap by 46 nucleotides CSW01_03845 and CSW01_03850 are separated by 10 nucleotides CSW01_03850 and CSW01_03855 are separated by 104 nucleotides CSW01_03855 and CSW01_03860 are separated by 21 nucleotides
CSW01_03840: CSW01_03840 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 791,700 to 792,758
_03840
CSW01_03845: CSW01_03845 - hypothetical protein, at 792,713 to 792,976
_03845
CSW01_03850: CSW01_03850 - tRNA guanosine(34) transglycosylase Tgt, at 792,987 to 794,126
_03850
CSW01_03855: CSW01_03855 - preprotein translocase subunit YajC, at 794,231 to 794,563
_03855
CSW01_03860: CSW01_03860 - protein translocase subunit SecD, at 794,585 to 796,438
_03860
Position (kb) 792
793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 791.989 kb on + strand, within CSW01_03840 at 792.036 kb on + strand, within CSW01_03840 at 792.062 kb on - strand, within CSW01_03840 at 792.071 kb on - strand, within CSW01_03840 at 792.201 kb on + strand, within CSW01_03840 at 792.201 kb on - strand, within CSW01_03840 at 792.209 kb on - strand, within CSW01_03840 at 792.289 kb on - strand, within CSW01_03840 at 792.296 kb on - strand, within CSW01_03840 at 792.304 kb on + strand, within CSW01_03840 at 792.304 kb on + strand, within CSW01_03840 at 792.304 kb on + strand, within CSW01_03840 at 792.312 kb on - strand, within CSW01_03840 at 792.312 kb on - strand, within CSW01_03840 at 792.312 kb on - strand, within CSW01_03840 at 792.312 kb on - strand, within CSW01_03840 at 792.331 kb on + strand, within CSW01_03840 at 792.331 kb on + strand, within CSW01_03840 at 792.332 kb on + strand, within CSW01_03840 at 792.332 kb on + strand, within CSW01_03840 at 792.340 kb on - strand, within CSW01_03840 at 792.459 kb on + strand, within CSW01_03840 at 792.466 kb on - strand, within CSW01_03840 at 792.467 kb on - strand, within CSW01_03840 at 792.621 kb on + strand, within CSW01_03840 at 792.621 kb on + strand, within CSW01_03840 at 792.660 kb on - strand at 792.662 kb on + strand at 792.862 kb on - strand, within CSW01_03845 at 792.879 kb on + strand, within CSW01_03845 at 792.921 kb on - strand, within CSW01_03845 at 792.968 kb on - strand at 793.062 kb on + strand at 793.062 kb on + strand at 793.062 kb on + strand at 793.062 kb on + strand at 793.062 kb on + strand at 793.062 kb on + strand at 793.070 kb on - strand at 793.070 kb on - strand at 793.070 kb on - strand at 793.070 kb on - strand at 793.070 kb on - strand at 793.070 kb on - strand at 793.117 kb on + strand, within CSW01_03850 at 793.165 kb on + strand, within CSW01_03850 at 793.173 kb on - strand, within CSW01_03850 at 793.197 kb on - strand, within CSW01_03850 at 793.243 kb on + strand, within CSW01_03850 at 793.243 kb on + strand, within CSW01_03850 at 793.243 kb on + strand, within CSW01_03850 at 793.243 kb on + strand, within CSW01_03850 at 793.243 kb on + strand, within CSW01_03850 at 793.251 kb on - strand, within CSW01_03850 at 793.251 kb on - strand, within CSW01_03850 at 793.251 kb on - strand, within CSW01_03850 at 793.251 kb on - strand, within CSW01_03850 at 793.251 kb on - strand, within CSW01_03850 at 793.251 kb on - strand, within CSW01_03850 at 793.251 kb on - strand, within CSW01_03850 at 793.251 kb on - strand, within CSW01_03850 at 793.251 kb on - strand, within CSW01_03850 at 793.256 kb on - strand, within CSW01_03850 at 793.275 kb on - strand, within CSW01_03850 at 793.295 kb on - strand, within CSW01_03850 at 793.422 kb on - strand, within CSW01_03850 at 793.423 kb on + strand, within CSW01_03850 at 793.424 kb on + strand, within CSW01_03850 at 793.432 kb on - strand, within CSW01_03850 at 793.432 kb on - strand, within CSW01_03850 at 793.510 kb on - strand, within CSW01_03850 at 793.626 kb on - strand, within CSW01_03850 at 793.633 kb on + strand, within CSW01_03850 at 793.633 kb on + strand, within CSW01_03850 at 793.641 kb on - strand, within CSW01_03850 at 793.641 kb on - strand, within CSW01_03850 at 793.641 kb on - strand, within CSW01_03850 at 793.667 kb on - strand, within CSW01_03850 at 793.677 kb on + strand, within CSW01_03850 at 793.687 kb on + strand, within CSW01_03850 at 793.695 kb on - strand, within CSW01_03850 at 793.695 kb on - strand, within CSW01_03850 at 793.695 kb on - strand, within CSW01_03850 at 793.737 kb on + strand, within CSW01_03850 at 793.748 kb on + strand, within CSW01_03850 at 793.909 kb on - strand, within CSW01_03850 at 793.969 kb on + strand, within CSW01_03850 at 793.995 kb on - strand, within CSW01_03850 at 794.050 kb on + strand at 794.138 kb on + strand at 794.138 kb on + strand at 794.196 kb on + strand at 794.338 kb on + strand, within CSW01_03855 at 794.353 kb on + strand, within CSW01_03855 at 794.405 kb on + strand, within CSW01_03855 at 794.411 kb on + strand, within CSW01_03855 at 794.411 kb on + strand, within CSW01_03855 at 794.419 kb on - strand, within CSW01_03855 at 794.419 kb on - strand, within CSW01_03855 at 794.419 kb on - strand, within CSW01_03855 at 794.426 kb on + strand, within CSW01_03855 at 794.437 kb on - strand, within CSW01_03855 at 794.458 kb on + strand, within CSW01_03855 at 794.536 kb on + strand at 794.536 kb on + strand at 794.585 kb on + strand at 794.587 kb on + strand at 794.593 kb on + strand at 794.593 kb on - strand at 794.593 kb on - strand at 794.595 kb on - strand at 794.639 kb on + strand at 794.686 kb on - strand at 794.712 kb on + strand at 794.763 kb on - strand at 794.872 kb on - strand, within CSW01_03860 at 794.955 kb on + strand, within CSW01_03860 at 794.955 kb on + strand, within CSW01_03860 at 794.963 kb on - strand, within CSW01_03860 at 794.972 kb on + strand, within CSW01_03860 at 795.048 kb on + strand, within CSW01_03860 at 795.053 kb on + strand, within CSW01_03860
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A remove 791,989 + CSW01_03840 0.27 +0.4 792,036 + CSW01_03840 0.32 -1.5 792,062 - CSW01_03840 0.34 -0.1 792,071 - CSW01_03840 0.35 +0.1 792,201 + CSW01_03840 0.47 -0.3 792,201 - CSW01_03840 0.47 -0.5 792,209 - CSW01_03840 0.48 -0.5 792,289 - CSW01_03840 0.56 +2.7 792,296 - CSW01_03840 0.56 -0.1 792,304 + CSW01_03840 0.57 -0.1 792,304 + CSW01_03840 0.57 +0.3 792,304 + CSW01_03840 0.57 +0.1 792,312 - CSW01_03840 0.58 -0.8 792,312 - CSW01_03840 0.58 -0.9 792,312 - CSW01_03840 0.58 -1.2 792,312 - CSW01_03840 0.58 +1.0 792,331 + CSW01_03840 0.60 +0.9 792,331 + CSW01_03840 0.60 +0.0 792,332 + CSW01_03840 0.60 -1.1 792,332 + CSW01_03840 0.60 -0.5 792,340 - CSW01_03840 0.60 +1.8 792,459 + CSW01_03840 0.72 -0.9 792,466 - CSW01_03840 0.72 +0.2 792,467 - CSW01_03840 0.72 +0.3 792,621 + CSW01_03840 0.87 -0.3 792,621 + CSW01_03840 0.87 -0.0 792,660 - -0.8 792,662 + -1.1 792,862 - CSW01_03845 0.56 +1.1 792,879 + CSW01_03845 0.63 -0.7 792,921 - CSW01_03845 0.79 +1.0 792,968 - +0.2 793,062 + -0.5 793,062 + -0.5 793,062 + +0.2 793,062 + +0.4 793,062 + -1.2 793,062 + +1.2 793,070 - +0.6 793,070 - -0.1 793,070 - +1.2 793,070 - -0.5 793,070 - -0.8 793,070 - -0.8 793,117 + CSW01_03850 0.11 -0.3 793,165 + CSW01_03850 0.16 -1.0 793,173 - CSW01_03850 0.16 -0.5 793,197 - CSW01_03850 0.18 -0.9 793,243 + CSW01_03850 0.22 +1.2 793,243 + CSW01_03850 0.22 -1.8 793,243 + CSW01_03850 0.22 -0.3 793,243 + CSW01_03850 0.22 -0.4 793,243 + CSW01_03850 0.22 -0.6 793,251 - CSW01_03850 0.23 +1.0 793,251 - CSW01_03850 0.23 -0.8 793,251 - CSW01_03850 0.23 -2.8 793,251 - CSW01_03850 0.23 -1.3 793,251 - CSW01_03850 0.23 +0.2 793,251 - CSW01_03850 0.23 -1.0 793,251 - CSW01_03850 0.23 -0.8 793,251 - CSW01_03850 0.23 -1.2 793,251 - CSW01_03850 0.23 +1.6 793,256 - CSW01_03850 0.24 +0.2 793,275 - CSW01_03850 0.25 -0.7 793,295 - CSW01_03850 0.27 +1.8 793,422 - CSW01_03850 0.38 +0.2 793,423 + CSW01_03850 0.38 -1.0 793,424 + CSW01_03850 0.38 -0.2 793,432 - CSW01_03850 0.39 +1.2 793,432 - CSW01_03850 0.39 -0.1 793,510 - CSW01_03850 0.46 +0.5 793,626 - CSW01_03850 0.56 -0.3 793,633 + CSW01_03850 0.57 +0.9 793,633 + CSW01_03850 0.57 -0.8 793,641 - CSW01_03850 0.57 -1.2 793,641 - CSW01_03850 0.57 -1.3 793,641 - CSW01_03850 0.57 +1.2 793,667 - CSW01_03850 0.60 +0.5 793,677 + CSW01_03850 0.61 +1.8 793,687 + CSW01_03850 0.61 -0.6 793,695 - CSW01_03850 0.62 +0.3 793,695 - CSW01_03850 0.62 -0.7 793,695 - CSW01_03850 0.62 -0.8 793,737 + CSW01_03850 0.66 +0.7 793,748 + CSW01_03850 0.67 +0.1 793,909 - CSW01_03850 0.81 -0.2 793,969 + CSW01_03850 0.86 -1.6 793,995 - CSW01_03850 0.88 +0.1 794,050 + -0.4 794,138 + +0.2 794,138 + +0.7 794,196 + -0.8 794,338 + CSW01_03855 0.32 +1.1 794,353 + CSW01_03855 0.37 -0.1 794,405 + CSW01_03855 0.52 +0.9 794,411 + CSW01_03855 0.54 -0.0 794,411 + CSW01_03855 0.54 -1.3 794,419 - CSW01_03855 0.56 +0.0 794,419 - CSW01_03855 0.56 +0.9 794,419 - CSW01_03855 0.56 -0.1 794,426 + CSW01_03855 0.59 -0.8 794,437 - CSW01_03855 0.62 -1.2 794,458 + CSW01_03855 0.68 +0.6 794,536 + -0.8 794,536 + +1.4 794,585 + +0.4 794,587 + +0.0 794,593 + +0.1 794,593 - +0.2 794,593 - +1.5 794,595 - +0.1 794,639 + -0.6 794,686 - -0.1 794,712 + +0.6 794,763 - +0.7 794,872 - CSW01_03860 0.15 +0.8 794,955 + CSW01_03860 0.20 -0.0 794,955 + CSW01_03860 0.20 +0.6 794,963 - CSW01_03860 0.20 -0.2 794,972 + CSW01_03860 0.21 -0.4 795,048 + CSW01_03860 0.25 +0.1 795,053 + CSW01_03860 0.25 +0.3
Or see this region's nucleotide sequence