Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03515

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03510 and CSW01_03515 are separated by 192 nucleotidesCSW01_03515 and CSW01_03520 are separated by 567 nucleotides CSW01_03510: CSW01_03510 - NADP(H)-dependent aldo-keto reductase, at 713,340 to 714,398 _03510 CSW01_03515: CSW01_03515 - DNA mismatch repair protein MutH, at 714,591 to 715,256 _03515 CSW01_03520: CSW01_03520 - RNA pyrophosphohydrolase, at 715,824 to 716,405 _03520 Position (kb) 714 715 716Strain fitness (log2 ratio) -1 0 1 2at 713.611 kb on + strand, within CSW01_03510at 713.612 kb on - strand, within CSW01_03510at 713.617 kb on - strand, within CSW01_03510at 713.631 kb on - strand, within CSW01_03510at 713.631 kb on - strand, within CSW01_03510at 713.693 kb on + strand, within CSW01_03510at 713.693 kb on + strand, within CSW01_03510at 713.693 kb on + strand, within CSW01_03510at 713.693 kb on + strand, within CSW01_03510at 713.740 kb on - strand, within CSW01_03510at 713.779 kb on + strand, within CSW01_03510at 713.797 kb on - strand, within CSW01_03510at 713.827 kb on + strand, within CSW01_03510at 713.885 kb on - strand, within CSW01_03510at 713.902 kb on - strand, within CSW01_03510at 713.912 kb on + strand, within CSW01_03510at 713.935 kb on + strand, within CSW01_03510at 713.941 kb on + strand, within CSW01_03510at 714.156 kb on - strand, within CSW01_03510at 714.181 kb on + strand, within CSW01_03510at 714.192 kb on + strand, within CSW01_03510at 714.222 kb on - strand, within CSW01_03510at 714.272 kb on + strand, within CSW01_03510at 714.272 kb on + strand, within CSW01_03510at 714.272 kb on + strand, within CSW01_03510at 714.272 kb on + strand, within CSW01_03510at 714.310 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.428 kb on + strandat 714.452 kb on - strandat 714.485 kb on + strandat 714.485 kb on + strandat 714.556 kb on - strandat 714.638 kb on + strandat 714.646 kb on - strandat 714.696 kb on - strand, within CSW01_03515at 714.741 kb on + strand, within CSW01_03515at 714.766 kb on + strand, within CSW01_03515at 714.766 kb on + strand, within CSW01_03515at 714.766 kb on + strand, within CSW01_03515at 714.774 kb on - strand, within CSW01_03515at 714.774 kb on - strand, within CSW01_03515at 714.774 kb on - strand, within CSW01_03515at 714.774 kb on - strand, within CSW01_03515at 714.789 kb on + strand, within CSW01_03515at 714.808 kb on + strand, within CSW01_03515at 714.816 kb on - strand, within CSW01_03515at 714.816 kb on - strand, within CSW01_03515at 714.816 kb on - strand, within CSW01_03515at 714.848 kb on + strand, within CSW01_03515at 714.856 kb on - strand, within CSW01_03515at 714.856 kb on - strand, within CSW01_03515at 714.907 kb on + strand, within CSW01_03515at 714.924 kb on - strand, within CSW01_03515at 714.953 kb on + strand, within CSW01_03515at 714.960 kb on + strand, within CSW01_03515at 714.975 kb on + strand, within CSW01_03515at 714.983 kb on - strand, within CSW01_03515at 715.038 kb on + strand, within CSW01_03515at 715.046 kb on - strand, within CSW01_03515at 715.145 kb on + strand, within CSW01_03515at 715.153 kb on - strand, within CSW01_03515at 715.153 kb on - strand, within CSW01_03515at 715.158 kb on + strand, within CSW01_03515at 715.166 kb on - strand, within CSW01_03515at 715.199 kb on - strandat 715.289 kb on - strandat 715.320 kb on - strandat 715.358 kb on + strandat 715.402 kb on - strandat 715.440 kb on + strandat 715.491 kb on + strandat 715.491 kb on + strandat 715.491 kb on + strandat 715.821 kb on + strandat 715.821 kb on + strandat 716.064 kb on - strand, within CSW01_03520

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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713,611 + CSW01_03510 0.26 -0.5
713,612 - CSW01_03510 0.26 +0.7
713,617 - CSW01_03510 0.26 +0.6
713,631 - CSW01_03510 0.27 +1.1
713,631 - CSW01_03510 0.27 +1.0
713,693 + CSW01_03510 0.33 +0.5
713,693 + CSW01_03510 0.33 +0.7
713,693 + CSW01_03510 0.33 +1.5
713,693 + CSW01_03510 0.33 +0.7
713,740 - CSW01_03510 0.38 +0.0
713,779 + CSW01_03510 0.41 +0.5
713,797 - CSW01_03510 0.43 -0.2
713,827 + CSW01_03510 0.46 +2.2
713,885 - CSW01_03510 0.51 -1.2
713,902 - CSW01_03510 0.53 +0.9
713,912 + CSW01_03510 0.54 +0.3
713,935 + CSW01_03510 0.56 +0.3
713,941 + CSW01_03510 0.57 +0.5
714,156 - CSW01_03510 0.77 -0.1
714,181 + CSW01_03510 0.79 +0.7
714,192 + CSW01_03510 0.80 +0.6
714,222 - CSW01_03510 0.83 -0.2
714,272 + CSW01_03510 0.88 +0.3
714,272 + CSW01_03510 0.88 +0.3
714,272 + CSW01_03510 0.88 -0.9
714,272 + CSW01_03510 0.88 -0.3
714,310 - -1.0
714,379 - +0.3
714,379 - -0.0
714,379 - -0.6
714,379 - -0.4
714,428 + +0.4
714,452 - +0.8
714,485 + -0.4
714,485 + +0.3
714,556 - -0.1
714,638 + -1.2
714,646 - +0.4
714,696 - CSW01_03515 0.16 -0.1
714,741 + CSW01_03515 0.23 +0.9
714,766 + CSW01_03515 0.26 -0.1
714,766 + CSW01_03515 0.26 +0.2
714,766 + CSW01_03515 0.26 +1.0
714,774 - CSW01_03515 0.27 -0.1
714,774 - CSW01_03515 0.27 -0.2
714,774 - CSW01_03515 0.27 -0.2
714,774 - CSW01_03515 0.27 -0.2
714,789 + CSW01_03515 0.30 -0.2
714,808 + CSW01_03515 0.33 +0.1
714,816 - CSW01_03515 0.34 +0.3
714,816 - CSW01_03515 0.34 -0.1
714,816 - CSW01_03515 0.34 +0.1
714,848 + CSW01_03515 0.39 +0.0
714,856 - CSW01_03515 0.40 -0.3
714,856 - CSW01_03515 0.40 +0.1
714,907 + CSW01_03515 0.47 +1.2
714,924 - CSW01_03515 0.50 +0.8
714,953 + CSW01_03515 0.54 -0.2
714,960 + CSW01_03515 0.55 +1.0
714,975 + CSW01_03515 0.58 -0.6
714,983 - CSW01_03515 0.59 +0.2
715,038 + CSW01_03515 0.67 +0.7
715,046 - CSW01_03515 0.68 -0.4
715,145 + CSW01_03515 0.83 +0.5
715,153 - CSW01_03515 0.84 +0.0
715,153 - CSW01_03515 0.84 -0.4
715,158 + CSW01_03515 0.85 +0.0
715,166 - CSW01_03515 0.86 +0.3
715,199 - +0.4
715,289 - +1.0
715,320 - +0.3
715,358 + +0.5
715,402 - -0.4
715,440 + +0.5
715,491 + +1.0
715,491 + +1.0
715,491 + +0.6
715,821 + +0.4
715,821 + -0.5
716,064 - CSW01_03520 0.41 +0.0

Or see this region's nucleotide sequence