Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03470

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03465 and CSW01_03470 are separated by 209 nucleotidesCSW01_03470 and CSW01_03475 are separated by 121 nucleotides CSW01_03465: CSW01_03465 - GGDEF-domain containing protein, at 700,353 to 702,410 _03465 CSW01_03470: CSW01_03470 - peptide chain release factor 3, at 702,620 to 704,209 _03470 CSW01_03475: CSW01_03475 - ATP-dependent RNA helicase SrmB, at 704,331 to 705,602 _03475 Position (kb) 702 703 704 705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 701.622 kb on - strand, within CSW01_03465at 701.666 kb on + strand, within CSW01_03465at 701.699 kb on + strand, within CSW01_03465at 701.789 kb on + strand, within CSW01_03465at 701.794 kb on + strand, within CSW01_03465at 701.800 kb on - strand, within CSW01_03465at 701.802 kb on - strand, within CSW01_03465at 701.802 kb on - strand, within CSW01_03465at 701.802 kb on - strand, within CSW01_03465at 701.806 kb on + strand, within CSW01_03465at 701.814 kb on - strand, within CSW01_03465at 702.004 kb on - strand, within CSW01_03465at 702.007 kb on + strand, within CSW01_03465at 702.009 kb on - strand, within CSW01_03465at 702.015 kb on - strand, within CSW01_03465at 702.028 kb on + strand, within CSW01_03465at 702.036 kb on - strand, within CSW01_03465at 702.036 kb on - strand, within CSW01_03465at 702.050 kb on + strand, within CSW01_03465at 702.075 kb on + strand, within CSW01_03465at 702.083 kb on - strand, within CSW01_03465at 702.087 kb on - strand, within CSW01_03465at 702.122 kb on - strand, within CSW01_03465at 702.277 kb on + strandat 702.277 kb on + strandat 702.290 kb on - strandat 702.307 kb on - strandat 702.531 kb on + strandat 702.541 kb on + strandat 702.566 kb on - strandat 702.588 kb on - strandat 702.655 kb on - strandat 702.655 kb on - strandat 702.755 kb on + strandat 702.768 kb on + strandat 702.768 kb on + strandat 703.009 kb on - strand, within CSW01_03470at 703.153 kb on - strand, within CSW01_03470at 703.200 kb on + strand, within CSW01_03470at 703.200 kb on + strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.254 kb on + strand, within CSW01_03470at 703.254 kb on + strand, within CSW01_03470at 703.257 kb on - strand, within CSW01_03470at 703.263 kb on - strand, within CSW01_03470at 703.264 kb on + strand, within CSW01_03470at 703.267 kb on - strand, within CSW01_03470at 703.278 kb on + strand, within CSW01_03470at 703.278 kb on + strand, within CSW01_03470at 703.278 kb on + strand, within CSW01_03470at 703.389 kb on + strand, within CSW01_03470at 703.399 kb on + strand, within CSW01_03470at 703.431 kb on + strand, within CSW01_03470at 703.454 kb on + strand, within CSW01_03470at 703.598 kb on - strand, within CSW01_03470at 703.609 kb on + strand, within CSW01_03470at 703.617 kb on + strand, within CSW01_03470at 703.659 kb on + strand, within CSW01_03470at 703.659 kb on + strand, within CSW01_03470at 703.659 kb on + strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.667 kb on - strand, within CSW01_03470at 703.691 kb on - strand, within CSW01_03470at 703.818 kb on + strand, within CSW01_03470at 703.826 kb on - strand, within CSW01_03470at 703.863 kb on + strand, within CSW01_03470at 703.871 kb on - strand, within CSW01_03470at 703.873 kb on + strand, within CSW01_03470at 703.881 kb on - strand, within CSW01_03470at 703.946 kb on + strand, within CSW01_03470at 703.980 kb on + strand, within CSW01_03470at 704.045 kb on - strand, within CSW01_03470at 704.071 kb on + strandat 704.102 kb on - strandat 704.112 kb on - strandat 704.188 kb on - strandat 704.307 kb on + strandat 704.328 kb on + strandat 704.618 kb on + strand, within CSW01_03475at 704.618 kb on + strand, within CSW01_03475at 704.618 kb on + strand, within CSW01_03475at 704.618 kb on + strand, within CSW01_03475at 704.618 kb on + strand, within CSW01_03475at 704.663 kb on - strand, within CSW01_03475at 705.012 kb on + strand, within CSW01_03475at 705.037 kb on - strand, within CSW01_03475at 705.037 kb on - strand, within CSW01_03475at 705.147 kb on - strand, within CSW01_03475at 705.186 kb on - strand, within CSW01_03475at 705.205 kb on + strand, within CSW01_03475

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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701,622 - CSW01_03465 0.62 +0.2
701,666 + CSW01_03465 0.64 +0.5
701,699 + CSW01_03465 0.65 +1.1
701,789 + CSW01_03465 0.70 +0.6
701,794 + CSW01_03465 0.70 +1.1
701,800 - CSW01_03465 0.70 +0.6
701,802 - CSW01_03465 0.70 -0.4
701,802 - CSW01_03465 0.70 +0.6
701,802 - CSW01_03465 0.70 +0.0
701,806 + CSW01_03465 0.71 +0.5
701,814 - CSW01_03465 0.71 +0.2
702,004 - CSW01_03465 0.80 -0.4
702,007 + CSW01_03465 0.80 -3.5
702,009 - CSW01_03465 0.80 +0.3
702,015 - CSW01_03465 0.81 +0.6
702,028 + CSW01_03465 0.81 +0.7
702,036 - CSW01_03465 0.82 +0.5
702,036 - CSW01_03465 0.82 -1.3
702,050 + CSW01_03465 0.82 +0.2
702,075 + CSW01_03465 0.84 -0.5
702,083 - CSW01_03465 0.84 -0.5
702,087 - CSW01_03465 0.84 +2.4
702,122 - CSW01_03465 0.86 -0.2
702,277 + -0.5
702,277 + +0.5
702,290 - +0.2
702,307 - -0.3
702,531 + -1.2
702,541 + -0.4
702,566 - -0.2
702,588 - +0.9
702,655 - -0.9
702,655 - +1.4
702,755 + -3.4
702,768 + +0.0
702,768 + -0.9
703,009 - CSW01_03470 0.24 +0.3
703,153 - CSW01_03470 0.34 +0.9
703,200 + CSW01_03470 0.36 -0.9
703,200 + CSW01_03470 0.36 -1.3
703,208 - CSW01_03470 0.37 -0.2
703,208 - CSW01_03470 0.37 +1.1
703,208 - CSW01_03470 0.37 -0.5
703,208 - CSW01_03470 0.37 +0.3
703,208 - CSW01_03470 0.37 +0.8
703,254 + CSW01_03470 0.40 +1.2
703,254 + CSW01_03470 0.40 +0.0
703,257 - CSW01_03470 0.40 +0.5
703,263 - CSW01_03470 0.40 +0.3
703,264 + CSW01_03470 0.41 -0.1
703,267 - CSW01_03470 0.41 +0.9
703,278 + CSW01_03470 0.41 -0.0
703,278 + CSW01_03470 0.41 -1.3
703,278 + CSW01_03470 0.41 -0.2
703,389 + CSW01_03470 0.48 -1.0
703,399 + CSW01_03470 0.49 +0.4
703,431 + CSW01_03470 0.51 +0.1
703,454 + CSW01_03470 0.52 +1.1
703,598 - CSW01_03470 0.62 +0.3
703,609 + CSW01_03470 0.62 -0.9
703,617 + CSW01_03470 0.63 +1.3
703,659 + CSW01_03470 0.65 +0.8
703,659 + CSW01_03470 0.65 -0.1
703,659 + CSW01_03470 0.65 +0.9
703,667 - CSW01_03470 0.66 +0.5
703,667 - CSW01_03470 0.66 -0.5
703,667 - CSW01_03470 0.66 +0.6
703,667 - CSW01_03470 0.66 +0.0
703,667 - CSW01_03470 0.66 +0.9
703,667 - CSW01_03470 0.66 -0.3
703,667 - CSW01_03470 0.66 -0.2
703,691 - CSW01_03470 0.67 -0.7
703,818 + CSW01_03470 0.75 +0.9
703,826 - CSW01_03470 0.76 +0.1
703,863 + CSW01_03470 0.78 -0.2
703,871 - CSW01_03470 0.79 +1.9
703,873 + CSW01_03470 0.79 -0.1
703,881 - CSW01_03470 0.79 +0.3
703,946 + CSW01_03470 0.83 -0.6
703,980 + CSW01_03470 0.86 -0.0
704,045 - CSW01_03470 0.90 -0.4
704,071 + -0.1
704,102 - -0.1
704,112 - +0.5
704,188 - -0.3
704,307 + -0.4
704,328 + +0.2
704,618 + CSW01_03475 0.23 -1.4
704,618 + CSW01_03475 0.23 +1.0
704,618 + CSW01_03475 0.23 -1.5
704,618 + CSW01_03475 0.23 -2.9
704,618 + CSW01_03475 0.23 -0.7
704,663 - CSW01_03475 0.26 -1.7
705,012 + CSW01_03475 0.54 +1.3
705,037 - CSW01_03475 0.56 -2.1
705,037 - CSW01_03475 0.56 +0.7
705,147 - CSW01_03475 0.64 +0.8
705,186 - CSW01_03475 0.67 +0.3
705,205 + CSW01_03475 0.69 -1.0

Or see this region's nucleotide sequence