Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03220

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03215 and CSW01_03220 are separated by 130 nucleotidesCSW01_03220 and CSW01_03225 are separated by 122 nucleotides CSW01_03215: CSW01_03215 - ABC transporter ATP-binding protein, at 640,396 to 641,427 _03215 CSW01_03220: CSW01_03220 - phosphonomutase, at 641,558 to 642,970 _03220 CSW01_03225: CSW01_03225 - N,N'-diacetylchitobiose phosphorylase, at 643,093 to 645,498 _03225 Position (kb) 641 642 643Strain fitness (log2 ratio) -2 -1 0 1 2at 640.575 kb on + strand, within CSW01_03215at 640.575 kb on + strand, within CSW01_03215at 640.583 kb on - strand, within CSW01_03215at 640.587 kb on + strand, within CSW01_03215at 640.595 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.622 kb on + strand, within CSW01_03215at 640.630 kb on - strand, within CSW01_03215at 640.630 kb on - strand, within CSW01_03215at 640.630 kb on - strand, within CSW01_03215at 640.630 kb on - strand, within CSW01_03215at 640.788 kb on + strand, within CSW01_03215at 640.812 kb on - strand, within CSW01_03215at 640.814 kb on + strand, within CSW01_03215at 640.814 kb on - strand, within CSW01_03215at 640.828 kb on + strand, within CSW01_03215at 640.845 kb on - strand, within CSW01_03215at 640.918 kb on - strand, within CSW01_03215at 640.940 kb on + strand, within CSW01_03215at 641.062 kb on + strand, within CSW01_03215at 641.065 kb on - strand, within CSW01_03215at 641.141 kb on + strand, within CSW01_03215at 641.141 kb on + strand, within CSW01_03215at 641.149 kb on - strand, within CSW01_03215at 641.159 kb on - strand, within CSW01_03215at 641.175 kb on - strand, within CSW01_03215at 641.231 kb on + strand, within CSW01_03215at 641.231 kb on + strand, within CSW01_03215at 641.239 kb on - strand, within CSW01_03215at 641.239 kb on - strand, within CSW01_03215at 641.239 kb on - strand, within CSW01_03215at 641.257 kb on + strand, within CSW01_03215at 641.257 kb on + strand, within CSW01_03215at 641.257 kb on + strand, within CSW01_03215at 641.292 kb on + strand, within CSW01_03215at 641.292 kb on - strand, within CSW01_03215at 641.300 kb on - strand, within CSW01_03215at 641.333 kb on + strandat 641.341 kb on - strandat 641.442 kb on - strandat 641.469 kb on + strandat 641.502 kb on + strandat 641.522 kb on + strandat 641.525 kb on - strandat 641.582 kb on - strandat 641.760 kb on + strand, within CSW01_03220at 641.796 kb on + strand, within CSW01_03220at 641.823 kb on + strand, within CSW01_03220at 641.823 kb on + strand, within CSW01_03220at 641.823 kb on + strand, within CSW01_03220at 641.831 kb on - strand, within CSW01_03220at 641.831 kb on - strand, within CSW01_03220at 641.934 kb on + strand, within CSW01_03220at 641.934 kb on + strand, within CSW01_03220at 641.970 kb on - strand, within CSW01_03220at 641.983 kb on + strand, within CSW01_03220at 642.037 kb on + strand, within CSW01_03220at 642.037 kb on + strand, within CSW01_03220at 642.037 kb on + strand, within CSW01_03220at 642.045 kb on - strand, within CSW01_03220at 642.090 kb on - strand, within CSW01_03220at 642.106 kb on + strand, within CSW01_03220at 642.106 kb on + strand, within CSW01_03220at 642.114 kb on - strand, within CSW01_03220at 642.114 kb on - strand, within CSW01_03220at 642.114 kb on - strand, within CSW01_03220at 642.114 kb on - strand, within CSW01_03220at 642.116 kb on + strand, within CSW01_03220at 642.242 kb on + strand, within CSW01_03220at 642.242 kb on + strand, within CSW01_03220at 642.242 kb on + strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.250 kb on - strand, within CSW01_03220at 642.346 kb on + strand, within CSW01_03220at 642.448 kb on + strand, within CSW01_03220at 642.496 kb on + strand, within CSW01_03220at 642.677 kb on + strand, within CSW01_03220at 642.681 kb on - strand, within CSW01_03220at 642.691 kb on - strand, within CSW01_03220at 642.696 kb on - strand, within CSW01_03220at 642.706 kb on - strand, within CSW01_03220at 642.724 kb on + strand, within CSW01_03220at 642.760 kb on + strand, within CSW01_03220at 642.768 kb on - strand, within CSW01_03220at 642.853 kb on - strandat 642.887 kb on + strandat 642.895 kb on - strandat 642.895 kb on - strandat 643.062 kb on + strandat 643.078 kb on - strandat 643.105 kb on + strandat 643.124 kb on - strandat 643.168 kb on + strandat 643.243 kb on + strandat 643.257 kb on + strandat 643.396 kb on + strand, within CSW01_03225at 643.396 kb on + strand, within CSW01_03225at 643.396 kb on + strand, within CSW01_03225at 643.431 kb on + strand, within CSW01_03225at 643.439 kb on + strand, within CSW01_03225at 643.439 kb on + strand, within CSW01_03225at 643.439 kb on + strand, within CSW01_03225at 643.439 kb on + strand, within CSW01_03225at 643.439 kb on - strand, within CSW01_03225at 643.444 kb on + strand, within CSW01_03225at 643.447 kb on - strand, within CSW01_03225at 643.509 kb on - strand, within CSW01_03225at 643.649 kb on + strand, within CSW01_03225at 643.662 kb on + strand, within CSW01_03225at 643.662 kb on + strand, within CSW01_03225at 643.670 kb on - strand, within CSW01_03225at 643.670 kb on - strand, within CSW01_03225at 643.670 kb on - strand, within CSW01_03225at 643.670 kb on - strand, within CSW01_03225at 643.749 kb on - strand, within CSW01_03225at 643.827 kb on + strand, within CSW01_03225at 643.827 kb on + strand, within CSW01_03225at 643.827 kb on + strand, within CSW01_03225at 643.832 kb on + strand, within CSW01_03225at 643.835 kb on - strand, within CSW01_03225at 643.835 kb on - strand, within CSW01_03225at 643.835 kb on - strand, within CSW01_03225at 643.909 kb on - strand, within CSW01_03225at 643.967 kb on + strand, within CSW01_03225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
remove
640,575 + CSW01_03215 0.17 +1.3
640,575 + CSW01_03215 0.17 +0.2
640,583 - CSW01_03215 0.18 +1.6
640,587 + CSW01_03215 0.19 -0.1
640,595 + CSW01_03215 0.19 +1.5
640,622 + CSW01_03215 0.22 +0.0
640,622 + CSW01_03215 0.22 +0.2
640,622 + CSW01_03215 0.22 -1.1
640,622 + CSW01_03215 0.22 +0.9
640,622 + CSW01_03215 0.22 -0.2
640,622 + CSW01_03215 0.22 +0.2
640,622 + CSW01_03215 0.22 -0.2
640,622 + CSW01_03215 0.22 -0.1
640,622 + CSW01_03215 0.22 -0.8
640,622 + CSW01_03215 0.22 -0.0
640,622 + CSW01_03215 0.22 -0.4
640,630 - CSW01_03215 0.23 +0.1
640,630 - CSW01_03215 0.23 +0.0
640,630 - CSW01_03215 0.23 +0.0
640,630 - CSW01_03215 0.23 -0.3
640,788 + CSW01_03215 0.38 -0.1
640,812 - CSW01_03215 0.40 -1.2
640,814 + CSW01_03215 0.41 +0.4
640,814 - CSW01_03215 0.41 +0.3
640,828 + CSW01_03215 0.42 -0.2
640,845 - CSW01_03215 0.44 +0.3
640,918 - CSW01_03215 0.51 -0.7
640,940 + CSW01_03215 0.53 -0.4
641,062 + CSW01_03215 0.65 -0.1
641,065 - CSW01_03215 0.65 -0.3
641,141 + CSW01_03215 0.72 +0.3
641,141 + CSW01_03215 0.72 -0.4
641,149 - CSW01_03215 0.73 -0.3
641,159 - CSW01_03215 0.74 +0.2
641,175 - CSW01_03215 0.75 -1.0
641,231 + CSW01_03215 0.81 +0.3
641,231 + CSW01_03215 0.81 +0.4
641,239 - CSW01_03215 0.82 +0.6
641,239 - CSW01_03215 0.82 +0.7
641,239 - CSW01_03215 0.82 -0.0
641,257 + CSW01_03215 0.83 +0.6
641,257 + CSW01_03215 0.83 +0.1
641,257 + CSW01_03215 0.83 -2.5
641,292 + CSW01_03215 0.87 +0.3
641,292 - CSW01_03215 0.87 -0.1
641,300 - CSW01_03215 0.88 +0.2
641,333 + -0.1
641,341 - +0.1
641,442 - -0.0
641,469 + +0.1
641,502 + -0.7
641,522 + +1.3
641,525 - +0.5
641,582 - -0.4
641,760 + CSW01_03220 0.14 -0.2
641,796 + CSW01_03220 0.17 -1.2
641,823 + CSW01_03220 0.19 +0.2
641,823 + CSW01_03220 0.19 +0.4
641,823 + CSW01_03220 0.19 -0.4
641,831 - CSW01_03220 0.19 -0.0
641,831 - CSW01_03220 0.19 -1.0
641,934 + CSW01_03220 0.27 -0.4
641,934 + CSW01_03220 0.27 +0.5
641,970 - CSW01_03220 0.29 -0.1
641,983 + CSW01_03220 0.30 +0.3
642,037 + CSW01_03220 0.34 -1.6
642,037 + CSW01_03220 0.34 -0.4
642,037 + CSW01_03220 0.34 +1.9
642,045 - CSW01_03220 0.34 -0.0
642,090 - CSW01_03220 0.38 -0.3
642,106 + CSW01_03220 0.39 -0.2
642,106 + CSW01_03220 0.39 -0.7
642,114 - CSW01_03220 0.39 -0.1
642,114 - CSW01_03220 0.39 +0.0
642,114 - CSW01_03220 0.39 +0.6
642,114 - CSW01_03220 0.39 -0.7
642,116 + CSW01_03220 0.39 -0.1
642,242 + CSW01_03220 0.48 +0.1
642,242 + CSW01_03220 0.48 -0.0
642,242 + CSW01_03220 0.48 -0.7
642,250 - CSW01_03220 0.49 +0.2
642,250 - CSW01_03220 0.49 +0.8
642,250 - CSW01_03220 0.49 +0.3
642,250 - CSW01_03220 0.49 +0.4
642,250 - CSW01_03220 0.49 -0.1
642,250 - CSW01_03220 0.49 +0.5
642,346 + CSW01_03220 0.56 -0.4
642,448 + CSW01_03220 0.63 -0.6
642,496 + CSW01_03220 0.66 +0.9
642,677 + CSW01_03220 0.79 +0.0
642,681 - CSW01_03220 0.79 -0.7
642,691 - CSW01_03220 0.80 -0.0
642,696 - CSW01_03220 0.81 -0.1
642,706 - CSW01_03220 0.81 +0.1
642,724 + CSW01_03220 0.83 +0.4
642,760 + CSW01_03220 0.85 -0.6
642,768 - CSW01_03220 0.86 +0.7
642,853 - -0.4
642,887 + -0.4
642,895 - +0.0
642,895 - +0.6
643,062 + -0.4
643,078 - +0.4
643,105 + -0.2
643,124 - +1.6
643,168 + -0.4
643,243 + -0.1
643,257 + +0.2
643,396 + CSW01_03225 0.13 +0.4
643,396 + CSW01_03225 0.13 -0.1
643,396 + CSW01_03225 0.13 +0.5
643,431 + CSW01_03225 0.14 +0.1
643,439 + CSW01_03225 0.14 +0.2
643,439 + CSW01_03225 0.14 -0.1
643,439 + CSW01_03225 0.14 -0.2
643,439 + CSW01_03225 0.14 +0.2
643,439 - CSW01_03225 0.14 +1.2
643,444 + CSW01_03225 0.15 +0.0
643,447 - CSW01_03225 0.15 -0.2
643,509 - CSW01_03225 0.17 -0.1
643,649 + CSW01_03225 0.23 -0.6
643,662 + CSW01_03225 0.24 -1.3
643,662 + CSW01_03225 0.24 -0.4
643,670 - CSW01_03225 0.24 -0.2
643,670 - CSW01_03225 0.24 -0.6
643,670 - CSW01_03225 0.24 -0.8
643,670 - CSW01_03225 0.24 +0.0
643,749 - CSW01_03225 0.27 +0.5
643,827 + CSW01_03225 0.31 -0.9
643,827 + CSW01_03225 0.31 -0.6
643,827 + CSW01_03225 0.31 -0.2
643,832 + CSW01_03225 0.31 +0.9
643,835 - CSW01_03225 0.31 +0.2
643,835 - CSW01_03225 0.31 -0.7
643,835 - CSW01_03225 0.31 -0.6
643,909 - CSW01_03225 0.34 +0.8
643,967 + CSW01_03225 0.36 +1.0

Or see this region's nucleotide sequence