Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03175

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03170 and CSW01_03175 overlap by 4 nucleotidesCSW01_03175 and CSW01_03180 are separated by 236 nucleotides CSW01_03170: CSW01_03170 - ATP-dependent helicase HrpB, at 625,045 to 627,507 _03170 CSW01_03175: CSW01_03175 - penicillin-binding protein 1B, at 627,504 to 629,837 _03175 CSW01_03180: CSW01_03180 - serine protease, at 630,074 to 632,368 _03180 Position (kb) 627 628 629 630Strain fitness (log2 ratio) -2 -1 0 1 2at 626.556 kb on - strand, within CSW01_03170at 626.556 kb on - strand, within CSW01_03170at 626.570 kb on + strand, within CSW01_03170at 626.624 kb on + strand, within CSW01_03170at 626.698 kb on + strand, within CSW01_03170at 626.723 kb on + strand, within CSW01_03170at 626.745 kb on + strand, within CSW01_03170at 626.754 kb on + strand, within CSW01_03170at 626.762 kb on - strand, within CSW01_03170at 626.772 kb on - strand, within CSW01_03170at 626.827 kb on + strand, within CSW01_03170at 626.840 kb on - strand, within CSW01_03170at 626.902 kb on + strand, within CSW01_03170at 626.912 kb on + strand, within CSW01_03170at 626.912 kb on + strand, within CSW01_03170at 626.918 kb on - strand, within CSW01_03170at 626.920 kb on - strand, within CSW01_03170at 626.920 kb on - strand, within CSW01_03170at 626.920 kb on - strand, within CSW01_03170at 626.920 kb on - strand, within CSW01_03170at 626.920 kb on - strand, within CSW01_03170at 626.920 kb on - strand, within CSW01_03170at 626.920 kb on - strand, within CSW01_03170at 626.938 kb on + strand, within CSW01_03170at 626.938 kb on + strand, within CSW01_03170at 626.938 kb on + strand, within CSW01_03170at 626.946 kb on - strand, within CSW01_03170at 626.946 kb on - strand, within CSW01_03170at 626.946 kb on - strand, within CSW01_03170at 626.946 kb on - strand, within CSW01_03170at 626.970 kb on - strand, within CSW01_03170at 626.992 kb on + strand, within CSW01_03170at 626.992 kb on + strand, within CSW01_03170at 627.022 kb on + strand, within CSW01_03170at 627.030 kb on - strand, within CSW01_03170at 627.030 kb on - strand, within CSW01_03170at 627.050 kb on + strand, within CSW01_03170at 627.063 kb on - strand, within CSW01_03170at 627.070 kb on - strand, within CSW01_03170at 627.090 kb on - strand, within CSW01_03170at 627.090 kb on - strand, within CSW01_03170at 627.094 kb on + strand, within CSW01_03170at 627.100 kb on + strand, within CSW01_03170at 627.120 kb on - strand, within CSW01_03170at 627.140 kb on + strand, within CSW01_03170at 627.193 kb on - strand, within CSW01_03170at 627.237 kb on + strand, within CSW01_03170at 627.237 kb on - strand, within CSW01_03170at 627.243 kb on - strand, within CSW01_03170at 627.258 kb on - strand, within CSW01_03170at 627.333 kb on + strandat 627.333 kb on + strandat 627.341 kb on - strandat 627.341 kb on - strandat 627.442 kb on - strandat 627.657 kb on + strandat 627.686 kb on + strandat 627.866 kb on + strand, within CSW01_03175at 627.895 kb on + strand, within CSW01_03175at 627.903 kb on - strand, within CSW01_03175at 627.925 kb on + strand, within CSW01_03175at 627.933 kb on - strand, within CSW01_03175at 627.947 kb on - strand, within CSW01_03175at 628.089 kb on + strand, within CSW01_03175at 628.097 kb on - strand, within CSW01_03175at 628.129 kb on + strand, within CSW01_03175at 628.129 kb on - strand, within CSW01_03175at 628.139 kb on - strand, within CSW01_03175at 628.163 kb on + strand, within CSW01_03175at 628.168 kb on + strand, within CSW01_03175at 628.169 kb on + strand, within CSW01_03175at 628.169 kb on + strand, within CSW01_03175at 628.176 kb on - strand, within CSW01_03175at 628.176 kb on - strand, within CSW01_03175at 628.177 kb on - strand, within CSW01_03175at 628.177 kb on - strand, within CSW01_03175at 628.188 kb on + strand, within CSW01_03175at 628.188 kb on + strand, within CSW01_03175at 628.196 kb on + strand, within CSW01_03175at 628.196 kb on - strand, within CSW01_03175at 628.196 kb on - strand, within CSW01_03175at 628.220 kb on + strand, within CSW01_03175at 628.258 kb on + strand, within CSW01_03175at 628.266 kb on - strand, within CSW01_03175at 628.266 kb on - strand, within CSW01_03175at 628.266 kb on - strand, within CSW01_03175at 628.275 kb on + strand, within CSW01_03175at 628.287 kb on - strand, within CSW01_03175at 628.353 kb on + strand, within CSW01_03175at 628.353 kb on + strand, within CSW01_03175at 628.389 kb on - strand, within CSW01_03175at 628.405 kb on + strand, within CSW01_03175at 628.408 kb on - strand, within CSW01_03175at 628.413 kb on - strand, within CSW01_03175at 628.413 kb on - strand, within CSW01_03175at 628.464 kb on + strand, within CSW01_03175at 628.464 kb on + strand, within CSW01_03175at 628.471 kb on - strand, within CSW01_03175at 628.472 kb on - strand, within CSW01_03175at 628.493 kb on + strand, within CSW01_03175at 628.615 kb on - strand, within CSW01_03175at 628.715 kb on + strand, within CSW01_03175at 628.717 kb on + strand, within CSW01_03175at 628.734 kb on - strand, within CSW01_03175at 628.745 kb on + strand, within CSW01_03175at 628.745 kb on + strand, within CSW01_03175at 628.745 kb on + strand, within CSW01_03175at 628.745 kb on + strand, within CSW01_03175at 628.745 kb on + strand, within CSW01_03175at 628.753 kb on - strand, within CSW01_03175at 628.753 kb on - strand, within CSW01_03175at 628.753 kb on - strand, within CSW01_03175at 628.836 kb on + strand, within CSW01_03175at 628.890 kb on + strand, within CSW01_03175at 628.890 kb on + strand, within CSW01_03175at 628.890 kb on + strand, within CSW01_03175at 628.898 kb on - strand, within CSW01_03175at 628.898 kb on - strand, within CSW01_03175at 628.898 kb on - strand, within CSW01_03175at 628.939 kb on + strand, within CSW01_03175at 628.959 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.017 kb on + strand, within CSW01_03175at 629.025 kb on - strand, within CSW01_03175at 629.025 kb on - strand, within CSW01_03175at 629.025 kb on - strand, within CSW01_03175at 629.025 kb on - strand, within CSW01_03175at 629.025 kb on - strand, within CSW01_03175at 629.036 kb on - strand, within CSW01_03175at 629.047 kb on - strand, within CSW01_03175at 629.049 kb on + strand, within CSW01_03175at 629.074 kb on + strand, within CSW01_03175at 629.144 kb on + strand, within CSW01_03175at 629.144 kb on + strand, within CSW01_03175at 629.154 kb on + strand, within CSW01_03175at 629.154 kb on + strand, within CSW01_03175at 629.159 kb on + strand, within CSW01_03175at 629.162 kb on - strand, within CSW01_03175at 629.162 kb on - strand, within CSW01_03175at 629.164 kb on + strand, within CSW01_03175at 629.201 kb on + strand, within CSW01_03175at 629.230 kb on + strand, within CSW01_03175at 629.242 kb on - strand, within CSW01_03175at 629.259 kb on + strand, within CSW01_03175at 629.346 kb on - strand, within CSW01_03175at 629.348 kb on + strand, within CSW01_03175at 629.356 kb on - strand, within CSW01_03175at 629.356 kb on - strand, within CSW01_03175at 629.373 kb on - strand, within CSW01_03175at 629.438 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.462 kb on + strand, within CSW01_03175at 629.470 kb on - strand, within CSW01_03175at 629.470 kb on - strand, within CSW01_03175at 629.470 kb on - strand, within CSW01_03175at 629.470 kb on - strand, within CSW01_03175at 629.478 kb on - strand, within CSW01_03175at 629.524 kb on - strand, within CSW01_03175at 629.547 kb on - strand, within CSW01_03175at 629.576 kb on + strand, within CSW01_03175at 629.628 kb on - strandat 629.666 kb on + strandat 629.688 kb on + strandat 629.696 kb on - strandat 629.706 kb on - strandat 629.716 kb on - strandat 629.734 kb on + strandat 629.757 kb on + strandat 629.767 kb on + strandat 629.775 kb on - strandat 629.789 kb on + strandat 629.798 kb on + strandat 629.991 kb on - strandat 630.016 kb on - strandat 630.089 kb on + strandat 630.089 kb on + strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.097 kb on - strandat 630.099 kb on + strandat 630.104 kb on + strandat 630.104 kb on + strandat 630.119 kb on - strandat 630.125 kb on + strandat 630.125 kb on + strandat 630.125 kb on + strandat 630.146 kb on + strandat 630.177 kb on - strandat 630.220 kb on + strandat 630.237 kb on + strandat 630.296 kb on - strandat 630.332 kb on - strand, within CSW01_03180at 630.354 kb on - strand, within CSW01_03180at 630.367 kb on - strand, within CSW01_03180at 630.390 kb on + strand, within CSW01_03180at 630.390 kb on + strand, within CSW01_03180at 630.398 kb on - strand, within CSW01_03180at 630.398 kb on - strand, within CSW01_03180at 630.465 kb on + strand, within CSW01_03180at 630.705 kb on + strand, within CSW01_03180at 630.713 kb on - strand, within CSW01_03180at 630.793 kb on + strand, within CSW01_03180at 630.815 kb on + strand, within CSW01_03180at 630.821 kb on - strand, within CSW01_03180

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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626,556 - CSW01_03170 0.61 +0.7
626,556 - CSW01_03170 0.61 -0.0
626,570 + CSW01_03170 0.62 -0.2
626,624 + CSW01_03170 0.64 -0.1
626,698 + CSW01_03170 0.67 +0.6
626,723 + CSW01_03170 0.68 +0.0
626,745 + CSW01_03170 0.69 +0.1
626,754 + CSW01_03170 0.69 -0.3
626,762 - CSW01_03170 0.70 -0.2
626,772 - CSW01_03170 0.70 +0.0
626,827 + CSW01_03170 0.72 -1.2
626,840 - CSW01_03170 0.73 -0.5
626,902 + CSW01_03170 0.75 -0.1
626,912 + CSW01_03170 0.76 -0.9
626,912 + CSW01_03170 0.76 +0.4
626,918 - CSW01_03170 0.76 -0.2
626,920 - CSW01_03170 0.76 -0.4
626,920 - CSW01_03170 0.76 -0.1
626,920 - CSW01_03170 0.76 +0.5
626,920 - CSW01_03170 0.76 -0.2
626,920 - CSW01_03170 0.76 +0.6
626,920 - CSW01_03170 0.76 +0.5
626,920 - CSW01_03170 0.76 -0.1
626,938 + CSW01_03170 0.77 +1.2
626,938 + CSW01_03170 0.77 +0.6
626,938 + CSW01_03170 0.77 -0.2
626,946 - CSW01_03170 0.77 +0.3
626,946 - CSW01_03170 0.77 -0.9
626,946 - CSW01_03170 0.77 +1.3
626,946 - CSW01_03170 0.77 +0.1
626,970 - CSW01_03170 0.78 +0.5
626,992 + CSW01_03170 0.79 +0.6
626,992 + CSW01_03170 0.79 -1.0
627,022 + CSW01_03170 0.80 -0.1
627,030 - CSW01_03170 0.81 -0.3
627,030 - CSW01_03170 0.81 -0.3
627,050 + CSW01_03170 0.81 -0.4
627,063 - CSW01_03170 0.82 -0.1
627,070 - CSW01_03170 0.82 -0.2
627,090 - CSW01_03170 0.83 +0.1
627,090 - CSW01_03170 0.83 +0.1
627,094 + CSW01_03170 0.83 -0.2
627,100 + CSW01_03170 0.83 -2.0
627,120 - CSW01_03170 0.84 +0.5
627,140 + CSW01_03170 0.85 +0.1
627,193 - CSW01_03170 0.87 -1.0
627,237 + CSW01_03170 0.89 +0.3
627,237 - CSW01_03170 0.89 -0.1
627,243 - CSW01_03170 0.89 +0.5
627,258 - CSW01_03170 0.90 -0.1
627,333 + +1.4
627,333 + +0.1
627,341 - +0.7
627,341 - -1.5
627,442 - +0.1
627,657 + +0.1
627,686 + +0.5
627,866 + CSW01_03175 0.16 +1.3
627,895 + CSW01_03175 0.17 +0.5
627,903 - CSW01_03175 0.17 -0.2
627,925 + CSW01_03175 0.18 +0.7
627,933 - CSW01_03175 0.18 +1.5
627,947 - CSW01_03175 0.19 +0.0
628,089 + CSW01_03175 0.25 +0.3
628,097 - CSW01_03175 0.25 -0.2
628,129 + CSW01_03175 0.27 -0.4
628,129 - CSW01_03175 0.27 +0.2
628,139 - CSW01_03175 0.27 -0.6
628,163 + CSW01_03175 0.28 -0.4
628,168 + CSW01_03175 0.28 -0.5
628,169 + CSW01_03175 0.28 +0.1
628,169 + CSW01_03175 0.28 -1.1
628,176 - CSW01_03175 0.29 +1.0
628,176 - CSW01_03175 0.29 -0.2
628,177 - CSW01_03175 0.29 -0.2
628,177 - CSW01_03175 0.29 -0.2
628,188 + CSW01_03175 0.29 -0.4
628,188 + CSW01_03175 0.29 +0.1
628,196 + CSW01_03175 0.30 -0.4
628,196 - CSW01_03175 0.30 -0.7
628,196 - CSW01_03175 0.30 -0.6
628,220 + CSW01_03175 0.31 -0.9
628,258 + CSW01_03175 0.32 -0.0
628,266 - CSW01_03175 0.33 -0.1
628,266 - CSW01_03175 0.33 +0.0
628,266 - CSW01_03175 0.33 -1.3
628,275 + CSW01_03175 0.33 -1.3
628,287 - CSW01_03175 0.34 +0.5
628,353 + CSW01_03175 0.36 -0.1
628,353 + CSW01_03175 0.36 +1.1
628,389 - CSW01_03175 0.38 +1.7
628,405 + CSW01_03175 0.39 -1.1
628,408 - CSW01_03175 0.39 -0.7
628,413 - CSW01_03175 0.39 +0.8
628,413 - CSW01_03175 0.39 -0.6
628,464 + CSW01_03175 0.41 +0.4
628,464 + CSW01_03175 0.41 -0.3
628,471 - CSW01_03175 0.41 +0.1
628,472 - CSW01_03175 0.41 -0.3
628,493 + CSW01_03175 0.42 -1.0
628,615 - CSW01_03175 0.48 -1.8
628,715 + CSW01_03175 0.52 -0.0
628,717 + CSW01_03175 0.52 -0.9
628,734 - CSW01_03175 0.53 -0.7
628,745 + CSW01_03175 0.53 +0.5
628,745 + CSW01_03175 0.53 -0.6
628,745 + CSW01_03175 0.53 +0.4
628,745 + CSW01_03175 0.53 -0.3
628,745 + CSW01_03175 0.53 -0.5
628,753 - CSW01_03175 0.54 +0.7
628,753 - CSW01_03175 0.54 -0.5
628,753 - CSW01_03175 0.54 +0.9
628,836 + CSW01_03175 0.57 -0.6
628,890 + CSW01_03175 0.59 +0.3
628,890 + CSW01_03175 0.59 -0.3
628,890 + CSW01_03175 0.59 +0.3
628,898 - CSW01_03175 0.60 +1.7
628,898 - CSW01_03175 0.60 -0.1
628,898 - CSW01_03175 0.60 +1.1
628,939 + CSW01_03175 0.61 -1.5
628,959 + CSW01_03175 0.62 -0.1
629,017 + CSW01_03175 0.65 -2.4
629,017 + CSW01_03175 0.65 +0.3
629,017 + CSW01_03175 0.65 -0.9
629,017 + CSW01_03175 0.65 +0.9
629,017 + CSW01_03175 0.65 +0.1
629,017 + CSW01_03175 0.65 -0.3
629,017 + CSW01_03175 0.65 -0.9
629,017 + CSW01_03175 0.65 +0.3
629,017 + CSW01_03175 0.65 -0.0
629,017 + CSW01_03175 0.65 -0.1
629,025 - CSW01_03175 0.65 -0.6
629,025 - CSW01_03175 0.65 +0.2
629,025 - CSW01_03175 0.65 -0.1
629,025 - CSW01_03175 0.65 +0.3
629,025 - CSW01_03175 0.65 -0.6
629,036 - CSW01_03175 0.66 -2.7
629,047 - CSW01_03175 0.66 -1.1
629,049 + CSW01_03175 0.66 -0.7
629,074 + CSW01_03175 0.67 +0.1
629,144 + CSW01_03175 0.70 +0.0
629,144 + CSW01_03175 0.70 +0.4
629,154 + CSW01_03175 0.71 +1.5
629,154 + CSW01_03175 0.71 +0.3
629,159 + CSW01_03175 0.71 +0.5
629,162 - CSW01_03175 0.71 +0.3
629,162 - CSW01_03175 0.71 +1.1
629,164 + CSW01_03175 0.71 +0.3
629,201 + CSW01_03175 0.73 -1.1
629,230 + CSW01_03175 0.74 -0.5
629,242 - CSW01_03175 0.74 +0.1
629,259 + CSW01_03175 0.75 +0.4
629,346 - CSW01_03175 0.79 +0.1
629,348 + CSW01_03175 0.79 -0.3
629,356 - CSW01_03175 0.79 -0.9
629,356 - CSW01_03175 0.79 -0.7
629,373 - CSW01_03175 0.80 +0.3
629,438 + CSW01_03175 0.83 -0.1
629,462 + CSW01_03175 0.84 +0.2
629,462 + CSW01_03175 0.84 -0.7
629,462 + CSW01_03175 0.84 +1.5
629,462 + CSW01_03175 0.84 -0.0
629,462 + CSW01_03175 0.84 +0.7
629,462 + CSW01_03175 0.84 -1.0
629,470 - CSW01_03175 0.84 +0.7
629,470 - CSW01_03175 0.84 -0.6
629,470 - CSW01_03175 0.84 -1.2
629,470 - CSW01_03175 0.84 +0.5
629,478 - CSW01_03175 0.85 +1.5
629,524 - CSW01_03175 0.87 -1.2
629,547 - CSW01_03175 0.88 -0.6
629,576 + CSW01_03175 0.89 -0.1
629,628 - -0.1
629,666 + -0.5
629,688 + -0.6
629,696 - +0.6
629,706 - -0.1
629,716 - +1.6
629,734 + +0.7
629,757 + +0.6
629,767 + -0.3
629,775 - +0.2
629,789 + +1.1
629,798 + +0.6
629,991 - -0.4
630,016 - +0.6
630,089 + -1.0
630,089 + +0.2
630,097 - +0.5
630,097 - +0.6
630,097 - -0.4
630,097 - +0.4
630,097 - +0.2
630,097 - -0.0
630,097 - -0.5
630,097 - +0.3
630,099 + +0.1
630,104 + +0.4
630,104 + -0.0
630,119 - -0.0
630,125 + +0.1
630,125 + +0.9
630,125 + +0.3
630,146 + +0.4
630,177 - +0.3
630,220 + +0.2
630,237 + +0.3
630,296 - -0.0
630,332 - CSW01_03180 0.11 -0.1
630,354 - CSW01_03180 0.12 -0.6
630,367 - CSW01_03180 0.13 +1.8
630,390 + CSW01_03180 0.14 +0.0
630,390 + CSW01_03180 0.14 +0.2
630,398 - CSW01_03180 0.14 +0.3
630,398 - CSW01_03180 0.14 +1.2
630,465 + CSW01_03180 0.17 +0.2
630,705 + CSW01_03180 0.27 -0.1
630,713 - CSW01_03180 0.28 -0.6
630,793 + CSW01_03180 0.31 +0.1
630,815 + CSW01_03180 0.32 +0.1
630,821 - CSW01_03180 0.33 -0.1

Or see this region's nucleotide sequence