Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02835 and CSW01_02840 are separated by 92 nucleotides CSW01_02840 and CSW01_02845 are separated by 267 nucleotides
CSW01_02835: CSW01_02835 - RNA polymerase sigma factor RpoS, at 563,473 to 564,480
_02835
CSW01_02840: CSW01_02840 - DNA mismatch repair protein MutS, at 564,573 to 567,161
_02840
CSW01_02845: CSW01_02845 - cysteine synthase CysM, at 567,429 to 568,316
_02845
Position (kb) 564
565
566
567
568 Strain fitness (log2 ratio) -1
0
1
2 at 563.605 kb on - strand, within CSW01_02835 at 563.616 kb on + strand, within CSW01_02835 at 563.636 kb on + strand, within CSW01_02835 at 563.636 kb on + strand, within CSW01_02835 at 563.644 kb on - strand, within CSW01_02835 at 563.706 kb on + strand, within CSW01_02835 at 563.735 kb on - strand, within CSW01_02835 at 563.821 kb on - strand, within CSW01_02835 at 563.821 kb on - strand, within CSW01_02835 at 563.823 kb on + strand, within CSW01_02835 at 563.841 kb on + strand, within CSW01_02835 at 563.848 kb on - strand, within CSW01_02835 at 563.849 kb on - strand, within CSW01_02835 at 563.859 kb on - strand, within CSW01_02835 at 563.907 kb on - strand, within CSW01_02835 at 563.969 kb on + strand, within CSW01_02835 at 563.974 kb on - strand, within CSW01_02835 at 564.026 kb on + strand, within CSW01_02835 at 564.034 kb on - strand, within CSW01_02835 at 564.034 kb on - strand, within CSW01_02835 at 564.046 kb on - strand, within CSW01_02835 at 564.124 kb on + strand, within CSW01_02835 at 564.129 kb on + strand, within CSW01_02835 at 564.137 kb on - strand, within CSW01_02835 at 564.137 kb on - strand, within CSW01_02835 at 564.159 kb on + strand, within CSW01_02835 at 564.270 kb on + strand, within CSW01_02835 at 564.283 kb on - strand, within CSW01_02835 at 564.305 kb on + strand, within CSW01_02835 at 564.305 kb on + strand, within CSW01_02835 at 564.320 kb on + strand, within CSW01_02835 at 564.320 kb on + strand, within CSW01_02835 at 564.357 kb on + strand, within CSW01_02835 at 564.401 kb on - strand at 564.408 kb on - strand at 564.408 kb on - strand at 564.408 kb on - strand at 564.456 kb on + strand at 564.464 kb on - strand at 564.521 kb on + strand at 564.603 kb on + strand at 564.603 kb on + strand at 564.603 kb on + strand at 564.611 kb on - strand at 564.619 kb on + strand at 564.619 kb on + strand at 564.637 kb on - strand at 564.637 kb on - strand at 564.672 kb on - strand at 564.742 kb on - strand at 564.747 kb on - strand at 564.758 kb on - strand at 564.842 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.849 kb on + strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.857 kb on - strand, within CSW01_02840 at 564.887 kb on + strand, within CSW01_02840 at 564.938 kb on + strand, within CSW01_02840 at 564.955 kb on - strand, within CSW01_02840 at 564.955 kb on - strand, within CSW01_02840 at 564.969 kb on - strand, within CSW01_02840 at 564.969 kb on - strand, within CSW01_02840 at 564.969 kb on - strand, within CSW01_02840 at 565.006 kb on + strand, within CSW01_02840 at 565.218 kb on - strand, within CSW01_02840 at 565.301 kb on - strand, within CSW01_02840 at 565.303 kb on + strand, within CSW01_02840 at 565.311 kb on - strand, within CSW01_02840 at 565.374 kb on + strand, within CSW01_02840 at 565.374 kb on + strand, within CSW01_02840 at 565.374 kb on + strand, within CSW01_02840 at 565.378 kb on + strand, within CSW01_02840 at 565.382 kb on - strand, within CSW01_02840 at 565.382 kb on - strand, within CSW01_02840 at 565.394 kb on - strand, within CSW01_02840 at 565.396 kb on + strand, within CSW01_02840 at 565.396 kb on + strand, within CSW01_02840 at 565.404 kb on - strand, within CSW01_02840 at 565.450 kb on - strand, within CSW01_02840 at 565.510 kb on + strand, within CSW01_02840 at 565.589 kb on + strand, within CSW01_02840 at 565.597 kb on - strand, within CSW01_02840 at 565.617 kb on - strand, within CSW01_02840 at 565.627 kb on - strand, within CSW01_02840 at 565.636 kb on + strand, within CSW01_02840 at 565.644 kb on - strand, within CSW01_02840 at 565.644 kb on - strand, within CSW01_02840 at 565.678 kb on - strand, within CSW01_02840 at 565.698 kb on - strand, within CSW01_02840 at 565.703 kb on - strand, within CSW01_02840 at 565.708 kb on - strand, within CSW01_02840 at 565.982 kb on + strand, within CSW01_02840 at 565.990 kb on - strand, within CSW01_02840 at 565.990 kb on - strand, within CSW01_02840 at 565.990 kb on - strand, within CSW01_02840 at 565.990 kb on - strand, within CSW01_02840 at 565.990 kb on - strand, within CSW01_02840 at 565.990 kb on - strand, within CSW01_02840 at 566.002 kb on + strand, within CSW01_02840 at 566.004 kb on + strand, within CSW01_02840 at 566.019 kb on + strand, within CSW01_02840 at 566.021 kb on + strand, within CSW01_02840 at 566.034 kb on + strand, within CSW01_02840 at 566.034 kb on + strand, within CSW01_02840 at 566.034 kb on + strand, within CSW01_02840 at 566.034 kb on + strand, within CSW01_02840 at 566.034 kb on + strand, within CSW01_02840 at 566.037 kb on - strand, within CSW01_02840 at 566.080 kb on - strand, within CSW01_02840 at 566.080 kb on - strand, within CSW01_02840 at 566.170 kb on + strand, within CSW01_02840 at 566.180 kb on + strand, within CSW01_02840 at 566.259 kb on + strand, within CSW01_02840 at 566.267 kb on - strand, within CSW01_02840 at 566.312 kb on + strand, within CSW01_02840 at 566.312 kb on + strand, within CSW01_02840 at 566.312 kb on + strand, within CSW01_02840 at 566.312 kb on + strand, within CSW01_02840 at 566.312 kb on + strand, within CSW01_02840 at 566.312 kb on + strand, within CSW01_02840 at 566.312 kb on + strand, within CSW01_02840 at 566.312 kb on + strand, within CSW01_02840 at 566.312 kb on + strand, within CSW01_02840 at 566.320 kb on - strand, within CSW01_02840 at 566.320 kb on - strand, within CSW01_02840 at 566.320 kb on - strand, within CSW01_02840 at 566.320 kb on - strand, within CSW01_02840 at 566.320 kb on - strand, within CSW01_02840 at 566.320 kb on - strand, within CSW01_02840 at 566.365 kb on + strand, within CSW01_02840 at 566.395 kb on + strand, within CSW01_02840 at 566.403 kb on - strand, within CSW01_02840 at 566.403 kb on - strand, within CSW01_02840 at 566.476 kb on - strand, within CSW01_02840 at 566.556 kb on + strand, within CSW01_02840 at 566.564 kb on - strand, within CSW01_02840 at 566.695 kb on - strand, within CSW01_02840 at 566.780 kb on - strand, within CSW01_02840 at 566.818 kb on + strand, within CSW01_02840 at 566.818 kb on + strand, within CSW01_02840 at 566.818 kb on + strand, within CSW01_02840 at 566.826 kb on - strand, within CSW01_02840 at 566.826 kb on - strand, within CSW01_02840 at 566.828 kb on + strand, within CSW01_02840 at 566.914 kb on + strand at 566.957 kb on - strand at 566.999 kb on + strand at 566.999 kb on + strand at 566.999 kb on + strand at 566.999 kb on + strand at 567.007 kb on - strand at 567.007 kb on - strand at 567.007 kb on - strand at 567.022 kb on + strand at 567.065 kb on - strand at 567.107 kb on + strand at 567.133 kb on - strand at 567.190 kb on + strand at 567.198 kb on - strand at 567.204 kb on - strand at 567.241 kb on + strand at 567.249 kb on - strand at 567.267 kb on - strand at 567.277 kb on + strand at 567.282 kb on - strand at 567.300 kb on + strand at 567.300 kb on + strand at 567.307 kb on + strand at 567.307 kb on + strand at 567.307 kb on + strand at 567.307 kb on + strand at 567.307 kb on + strand at 567.315 kb on - strand at 567.315 kb on - strand at 567.315 kb on - strand at 567.315 kb on - strand at 567.317 kb on + strand at 567.354 kb on - strand at 567.360 kb on - strand at 567.379 kb on + strand at 567.402 kb on + strand at 567.478 kb on + strand at 567.547 kb on - strand, within CSW01_02845 at 567.582 kb on + strand, within CSW01_02845 at 567.582 kb on + strand, within CSW01_02845 at 567.712 kb on - strand, within CSW01_02845 at 567.735 kb on - strand, within CSW01_02845 at 567.874 kb on - strand, within CSW01_02845 at 567.879 kb on - strand, within CSW01_02845 at 567.879 kb on - strand, within CSW01_02845 at 567.906 kb on + strand, within CSW01_02845 at 567.927 kb on + strand, within CSW01_02845 at 567.957 kb on + strand, within CSW01_02845 at 567.965 kb on - strand, within CSW01_02845 at 567.965 kb on - strand, within CSW01_02845 at 567.965 kb on - strand, within CSW01_02845 at 567.991 kb on - strand, within CSW01_02845 at 568.002 kb on + strand, within CSW01_02845 at 568.010 kb on - strand, within CSW01_02845 at 568.019 kb on + strand, within CSW01_02845 at 568.019 kb on + strand, within CSW01_02845 at 568.061 kb on - strand, within CSW01_02845 at 568.075 kb on + strand, within CSW01_02845 at 568.088 kb on - strand, within CSW01_02845 at 568.141 kb on - strand, within CSW01_02845
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A remove 563,605 - CSW01_02835 0.13 +0.2 563,616 + CSW01_02835 0.14 -0.6 563,636 + CSW01_02835 0.16 -0.3 563,636 + CSW01_02835 0.16 -0.6 563,644 - CSW01_02835 0.17 -0.1 563,706 + CSW01_02835 0.23 +0.6 563,735 - CSW01_02835 0.26 -0.1 563,821 - CSW01_02835 0.35 +0.4 563,821 - CSW01_02835 0.35 +0.2 563,823 + CSW01_02835 0.35 -0.4 563,841 + CSW01_02835 0.37 -0.8 563,848 - CSW01_02835 0.37 +0.3 563,849 - CSW01_02835 0.37 +0.1 563,859 - CSW01_02835 0.38 +1.5 563,907 - CSW01_02835 0.43 -0.4 563,969 + CSW01_02835 0.49 -0.1 563,974 - CSW01_02835 0.50 -0.1 564,026 + CSW01_02835 0.55 -0.4 564,034 - CSW01_02835 0.56 +0.3 564,034 - CSW01_02835 0.56 +0.3 564,046 - CSW01_02835 0.57 +0.4 564,124 + CSW01_02835 0.65 +1.3 564,129 + CSW01_02835 0.65 -0.7 564,137 - CSW01_02835 0.66 -1.0 564,137 - CSW01_02835 0.66 -0.5 564,159 + CSW01_02835 0.68 -0.1 564,270 + CSW01_02835 0.79 -0.3 564,283 - CSW01_02835 0.80 +0.2 564,305 + CSW01_02835 0.83 -0.1 564,305 + CSW01_02835 0.83 +0.3 564,320 + CSW01_02835 0.84 +0.3 564,320 + CSW01_02835 0.84 +0.8 564,357 + CSW01_02835 0.88 +0.6 564,401 - +0.3 564,408 - +0.1 564,408 - -0.6 564,408 - +0.4 564,456 + +0.6 564,464 - -0.1 564,521 + -0.1 564,603 + -0.9 564,603 + +0.3 564,603 + -1.0 564,611 - -0.1 564,619 + -1.7 564,619 + +0.1 564,637 - -0.4 564,637 - +0.9 564,672 - +0.6 564,742 - -1.2 564,747 - -0.1 564,758 - +0.5 564,842 + CSW01_02840 0.10 +0.2 564,849 + CSW01_02840 0.11 +0.1 564,849 + CSW01_02840 0.11 -0.5 564,849 + CSW01_02840 0.11 -0.4 564,849 + CSW01_02840 0.11 -0.4 564,849 + CSW01_02840 0.11 -0.0 564,849 + CSW01_02840 0.11 -0.3 564,849 + CSW01_02840 0.11 +0.5 564,849 + CSW01_02840 0.11 -0.2 564,849 + CSW01_02840 0.11 -0.1 564,849 + CSW01_02840 0.11 +0.3 564,849 + CSW01_02840 0.11 -0.3 564,849 + CSW01_02840 0.11 +0.7 564,849 + CSW01_02840 0.11 +0.1 564,849 + CSW01_02840 0.11 +0.1 564,849 + CSW01_02840 0.11 -0.4 564,849 + CSW01_02840 0.11 -0.2 564,857 - CSW01_02840 0.11 -0.3 564,857 - CSW01_02840 0.11 -0.3 564,857 - CSW01_02840 0.11 -0.0 564,857 - CSW01_02840 0.11 +0.0 564,857 - CSW01_02840 0.11 +0.7 564,857 - CSW01_02840 0.11 +0.2 564,857 - CSW01_02840 0.11 -0.1 564,857 - CSW01_02840 0.11 +0.9 564,857 - CSW01_02840 0.11 -0.1 564,857 - CSW01_02840 0.11 +0.2 564,857 - CSW01_02840 0.11 +0.3 564,887 + CSW01_02840 0.12 +0.5 564,938 + CSW01_02840 0.14 +0.1 564,955 - CSW01_02840 0.15 -1.6 564,955 - CSW01_02840 0.15 +0.5 564,969 - CSW01_02840 0.15 +0.3 564,969 - CSW01_02840 0.15 -0.5 564,969 - CSW01_02840 0.15 -1.0 565,006 + CSW01_02840 0.17 +0.7 565,218 - CSW01_02840 0.25 +0.4 565,301 - CSW01_02840 0.28 -0.4 565,303 + CSW01_02840 0.28 -0.7 565,311 - CSW01_02840 0.29 -1.6 565,374 + CSW01_02840 0.31 +0.4 565,374 + CSW01_02840 0.31 -0.4 565,374 + CSW01_02840 0.31 +0.5 565,378 + CSW01_02840 0.31 -0.8 565,382 - CSW01_02840 0.31 -0.3 565,382 - CSW01_02840 0.31 +0.1 565,394 - CSW01_02840 0.32 -0.8 565,396 + CSW01_02840 0.32 +0.1 565,396 + CSW01_02840 0.32 +0.5 565,404 - CSW01_02840 0.32 -0.5 565,450 - CSW01_02840 0.34 -0.5 565,510 + CSW01_02840 0.36 -0.6 565,589 + CSW01_02840 0.39 -0.0 565,597 - CSW01_02840 0.40 +0.1 565,617 - CSW01_02840 0.40 -0.6 565,627 - CSW01_02840 0.41 -1.0 565,636 + CSW01_02840 0.41 +0.1 565,644 - CSW01_02840 0.41 +0.2 565,644 - CSW01_02840 0.41 -0.7 565,678 - CSW01_02840 0.43 -0.2 565,698 - CSW01_02840 0.43 -0.8 565,703 - CSW01_02840 0.44 -0.3 565,708 - CSW01_02840 0.44 -0.1 565,982 + CSW01_02840 0.54 +0.1 565,990 - CSW01_02840 0.55 -0.3 565,990 - CSW01_02840 0.55 -1.1 565,990 - CSW01_02840 0.55 +0.4 565,990 - CSW01_02840 0.55 +0.6 565,990 - CSW01_02840 0.55 -0.1 565,990 - CSW01_02840 0.55 -0.1 566,002 + CSW01_02840 0.55 +0.1 566,004 + CSW01_02840 0.55 +0.1 566,019 + CSW01_02840 0.56 +0.7 566,021 + CSW01_02840 0.56 +0.3 566,034 + CSW01_02840 0.56 +0.2 566,034 + CSW01_02840 0.56 +0.5 566,034 + CSW01_02840 0.56 -0.3 566,034 + CSW01_02840 0.56 +0.1 566,034 + CSW01_02840 0.56 +0.1 566,037 - CSW01_02840 0.57 -0.2 566,080 - CSW01_02840 0.58 +0.9 566,080 - CSW01_02840 0.58 +0.6 566,170 + CSW01_02840 0.62 -0.7 566,180 + CSW01_02840 0.62 +1.5 566,259 + CSW01_02840 0.65 -0.4 566,267 - CSW01_02840 0.65 +1.1 566,312 + CSW01_02840 0.67 -0.6 566,312 + CSW01_02840 0.67 +0.7 566,312 + CSW01_02840 0.67 +1.9 566,312 + CSW01_02840 0.67 +0.9 566,312 + CSW01_02840 0.67 -1.6 566,312 + CSW01_02840 0.67 -0.2 566,312 + CSW01_02840 0.67 +0.4 566,312 + CSW01_02840 0.67 -0.4 566,312 + CSW01_02840 0.67 +1.2 566,320 - CSW01_02840 0.67 -0.4 566,320 - CSW01_02840 0.67 +0.6 566,320 - CSW01_02840 0.67 +0.1 566,320 - CSW01_02840 0.67 -0.7 566,320 - CSW01_02840 0.67 +0.6 566,320 - CSW01_02840 0.67 +1.0 566,365 + CSW01_02840 0.69 +0.3 566,395 + CSW01_02840 0.70 +0.3 566,403 - CSW01_02840 0.71 +0.5 566,403 - CSW01_02840 0.71 +0.8 566,476 - CSW01_02840 0.74 -0.3 566,556 + CSW01_02840 0.77 -0.5 566,564 - CSW01_02840 0.77 -0.5 566,695 - CSW01_02840 0.82 -0.1 566,780 - CSW01_02840 0.85 -0.1 566,818 + CSW01_02840 0.87 +0.4 566,818 + CSW01_02840 0.87 +0.3 566,818 + CSW01_02840 0.87 +0.2 566,826 - CSW01_02840 0.87 -1.0 566,826 - CSW01_02840 0.87 +0.3 566,828 + CSW01_02840 0.87 -0.6 566,914 + +0.3 566,957 - -0.1 566,999 + +0.0 566,999 + -0.2 566,999 + -0.1 566,999 + +0.2 567,007 - +0.3 567,007 - +0.2 567,007 - +0.3 567,022 + -0.5 567,065 - +2.2 567,107 + +0.3 567,133 - -1.1 567,190 + +0.2 567,198 - -0.8 567,204 - +1.5 567,241 + -0.0 567,249 - +0.7 567,267 - +0.2 567,277 + -0.2 567,282 - -0.4 567,300 + -0.6 567,300 + +0.9 567,307 + +1.0 567,307 + +0.2 567,307 + +0.2 567,307 + +1.6 567,307 + -0.3 567,315 - -0.1 567,315 - -0.5 567,315 - -0.5 567,315 - -1.0 567,317 + +0.5 567,354 - -0.2 567,360 - -0.4 567,379 + -0.2 567,402 + -1.5 567,478 + +0.7 567,547 - CSW01_02845 0.13 -0.3 567,582 + CSW01_02845 0.17 -0.9 567,582 + CSW01_02845 0.17 -0.6 567,712 - CSW01_02845 0.32 +0.1 567,735 - CSW01_02845 0.34 -0.6 567,874 - CSW01_02845 0.50 +1.4 567,879 - CSW01_02845 0.51 +0.2 567,879 - CSW01_02845 0.51 -0.7 567,906 + CSW01_02845 0.54 +0.9 567,927 + CSW01_02845 0.56 -0.3 567,957 + CSW01_02845 0.59 -0.2 567,965 - CSW01_02845 0.60 -0.5 567,965 - CSW01_02845 0.60 -1.3 567,965 - CSW01_02845 0.60 +0.9 567,991 - CSW01_02845 0.63 +0.9 568,002 + CSW01_02845 0.65 +0.4 568,010 - CSW01_02845 0.65 +0.1 568,019 + CSW01_02845 0.66 +0.2 568,019 + CSW01_02845 0.66 +0.4 568,061 - CSW01_02845 0.71 -0.9 568,075 + CSW01_02845 0.73 +0.2 568,088 - CSW01_02845 0.74 -0.3 568,141 - CSW01_02845 0.80 +0.1
Or see this region's nucleotide sequence