Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02820

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02815 and CSW01_02820 overlap by 38 nucleotidesCSW01_02820 and CSW01_02825 overlap by 8 nucleotidesCSW01_02825 and CSW01_02830 overlap by 1 nucleotides CSW01_02815: CSW01_02815 - tRNA pseudouridine(13) synthase TruD, at 560,006 to 561,091 _02815 CSW01_02820: CSW01_02820 - 5'-nucleotidase SurE, at 561,054 to 561,845 _02820 CSW01_02825: CSW01_02825 - protein-L-isoaspartate O-methyltransferase, at 561,838 to 562,464 _02825 CSW01_02830: CSW01_02830 - murein hydrolase activator NlpD, at 562,464 to 563,399 _02830 Position (kb) 561 562Strain fitness (log2 ratio) -1 0 1at 560.059 kb on + strandat 560.059 kb on + strandat 560.086 kb on + strandat 560.102 kb on + strandat 560.102 kb on + strandat 560.110 kb on - strandat 560.136 kb on + strand, within CSW01_02815at 560.162 kb on + strand, within CSW01_02815at 560.162 kb on + strand, within CSW01_02815at 560.172 kb on - strand, within CSW01_02815at 560.269 kb on + strand, within CSW01_02815at 560.269 kb on + strand, within CSW01_02815at 560.277 kb on - strand, within CSW01_02815at 560.327 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.454 kb on - strand, within CSW01_02815at 560.520 kb on + strand, within CSW01_02815at 560.527 kb on + strand, within CSW01_02815at 560.552 kb on - strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.607 kb on - strand, within CSW01_02815at 560.653 kb on + strand, within CSW01_02815at 560.661 kb on - strand, within CSW01_02815at 560.724 kb on + strand, within CSW01_02815at 560.737 kb on + strand, within CSW01_02815at 560.796 kb on - strand, within CSW01_02815at 560.810 kb on + strand, within CSW01_02815at 560.810 kb on + strand, within CSW01_02815at 560.818 kb on - strand, within CSW01_02815at 560.956 kb on - strand, within CSW01_02815at 560.975 kb on + strand, within CSW01_02815at 560.975 kb on + strand, within CSW01_02815at 561.024 kb on + strandat 561.024 kb on + strandat 561.030 kb on - strandat 561.229 kb on + strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.259 kb on - strand, within CSW01_02820at 561.334 kb on - strand, within CSW01_02820at 561.346 kb on + strand, within CSW01_02820at 561.373 kb on + strand, within CSW01_02820at 561.406 kb on - strand, within CSW01_02820at 561.465 kb on - strand, within CSW01_02820at 561.525 kb on + strand, within CSW01_02820at 561.756 kb on + strand, within CSW01_02820at 561.770 kb on + strandat 561.778 kb on - strandat 561.894 kb on - strandat 561.960 kb on + strand, within CSW01_02825at 561.977 kb on + strand, within CSW01_02825at 561.987 kb on + strand, within CSW01_02825at 561.987 kb on + strand, within CSW01_02825at 561.994 kb on + strand, within CSW01_02825at 561.995 kb on + strand, within CSW01_02825at 562.000 kb on + strand, within CSW01_02825at 562.000 kb on + strand, within CSW01_02825at 562.002 kb on - strand, within CSW01_02825at 562.002 kb on - strand, within CSW01_02825at 562.003 kb on - strand, within CSW01_02825at 562.008 kb on - strand, within CSW01_02825at 562.008 kb on - strand, within CSW01_02825at 562.017 kb on + strand, within CSW01_02825at 562.025 kb on - strand, within CSW01_02825at 562.098 kb on - strand, within CSW01_02825at 562.142 kb on + strand, within CSW01_02825at 562.142 kb on + strand, within CSW01_02825at 562.152 kb on + strand, within CSW01_02825at 562.152 kb on + strand, within CSW01_02825at 562.160 kb on - strand, within CSW01_02825at 562.315 kb on - strand, within CSW01_02825at 562.334 kb on + strand, within CSW01_02825at 562.409 kb on - strandat 562.416 kb on + strandat 562.423 kb on + strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.522 kb on + strandat 562.530 kb on - strandat 562.530 kb on - strandat 562.592 kb on + strand, within CSW01_02830at 562.633 kb on + strand, within CSW01_02830at 562.697 kb on + strand, within CSW01_02830at 562.705 kb on - strand, within CSW01_02830at 562.705 kb on - strand, within CSW01_02830at 562.714 kb on - strand, within CSW01_02830at 562.786 kb on - strand, within CSW01_02830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
remove
560,059 + +0.4
560,059 + -1.3
560,086 + -0.2
560,102 + +0.8
560,102 + -0.3
560,110 - +1.0
560,136 + CSW01_02815 0.12 +0.0
560,162 + CSW01_02815 0.14 +0.1
560,162 + CSW01_02815 0.14 +0.1
560,172 - CSW01_02815 0.15 -0.6
560,269 + CSW01_02815 0.24 -0.4
560,269 + CSW01_02815 0.24 -0.1
560,277 - CSW01_02815 0.25 +0.0
560,327 + CSW01_02815 0.30 +1.3
560,444 + CSW01_02815 0.40 +0.3
560,444 + CSW01_02815 0.40 -0.5
560,444 + CSW01_02815 0.40 +1.3
560,444 + CSW01_02815 0.40 +0.3
560,444 + CSW01_02815 0.40 -0.0
560,444 + CSW01_02815 0.40 -0.2
560,444 + CSW01_02815 0.40 +0.7
560,444 + CSW01_02815 0.40 +0.0
560,444 + CSW01_02815 0.40 -0.1
560,452 - CSW01_02815 0.41 -0.1
560,452 - CSW01_02815 0.41 -0.6
560,452 - CSW01_02815 0.41 +0.9
560,452 - CSW01_02815 0.41 -0.3
560,452 - CSW01_02815 0.41 +0.6
560,452 - CSW01_02815 0.41 +0.0
560,452 - CSW01_02815 0.41 +0.4
560,452 - CSW01_02815 0.41 +1.6
560,452 - CSW01_02815 0.41 +0.3
560,452 - CSW01_02815 0.41 +0.3
560,452 - CSW01_02815 0.41 +0.0
560,454 - CSW01_02815 0.41 -0.1
560,520 + CSW01_02815 0.47 -0.5
560,527 + CSW01_02815 0.48 +0.9
560,552 - CSW01_02815 0.50 -0.2
560,589 + CSW01_02815 0.54 -0.2
560,589 + CSW01_02815 0.54 -0.4
560,589 + CSW01_02815 0.54 +0.5
560,589 + CSW01_02815 0.54 +0.2
560,589 + CSW01_02815 0.54 -0.2
560,589 + CSW01_02815 0.54 -0.1
560,589 + CSW01_02815 0.54 -0.0
560,589 + CSW01_02815 0.54 -1.0
560,589 + CSW01_02815 0.54 +0.5
560,597 - CSW01_02815 0.54 -0.8
560,597 - CSW01_02815 0.54 -0.5
560,597 - CSW01_02815 0.54 +0.3
560,597 - CSW01_02815 0.54 +0.2
560,597 - CSW01_02815 0.54 -0.6
560,597 - CSW01_02815 0.54 +0.4
560,597 - CSW01_02815 0.54 +0.1
560,607 - CSW01_02815 0.55 +0.3
560,653 + CSW01_02815 0.60 -0.1
560,661 - CSW01_02815 0.60 -0.3
560,724 + CSW01_02815 0.66 -0.1
560,737 + CSW01_02815 0.67 +0.6
560,796 - CSW01_02815 0.73 -0.6
560,810 + CSW01_02815 0.74 +0.1
560,810 + CSW01_02815 0.74 +0.5
560,818 - CSW01_02815 0.75 +1.3
560,956 - CSW01_02815 0.87 +0.3
560,975 + CSW01_02815 0.89 -0.3
560,975 + CSW01_02815 0.89 +0.1
561,024 + -0.0
561,024 + +0.2
561,030 - -0.9
561,229 + CSW01_02820 0.22 -0.4
561,237 - CSW01_02820 0.23 +1.4
561,237 - CSW01_02820 0.23 +1.1
561,237 - CSW01_02820 0.23 -1.1
561,237 - CSW01_02820 0.23 +0.3
561,259 - CSW01_02820 0.26 -0.0
561,334 - CSW01_02820 0.35 +0.3
561,346 + CSW01_02820 0.37 -0.0
561,373 + CSW01_02820 0.40 -0.5
561,406 - CSW01_02820 0.44 -0.3
561,465 - CSW01_02820 0.52 -0.4
561,525 + CSW01_02820 0.59 -0.5
561,756 + CSW01_02820 0.89 -0.3
561,770 + -0.1
561,778 - -0.2
561,894 - -0.2
561,960 + CSW01_02825 0.19 +0.1
561,977 + CSW01_02825 0.22 +0.6
561,987 + CSW01_02825 0.24 +0.1
561,987 + CSW01_02825 0.24 -0.1
561,994 + CSW01_02825 0.25 +0.1
561,995 + CSW01_02825 0.25 +0.2
562,000 + CSW01_02825 0.26 +0.6
562,000 + CSW01_02825 0.26 -0.4
562,002 - CSW01_02825 0.26 +0.1
562,002 - CSW01_02825 0.26 -0.6
562,003 - CSW01_02825 0.26 +0.3
562,008 - CSW01_02825 0.27 +0.8
562,008 - CSW01_02825 0.27 +0.0
562,017 + CSW01_02825 0.29 -0.7
562,025 - CSW01_02825 0.30 +1.1
562,098 - CSW01_02825 0.41 -0.5
562,142 + CSW01_02825 0.48 +1.4
562,142 + CSW01_02825 0.48 +0.6
562,152 + CSW01_02825 0.50 +0.1
562,152 + CSW01_02825 0.50 +1.4
562,160 - CSW01_02825 0.51 -0.5
562,315 - CSW01_02825 0.76 -0.1
562,334 + CSW01_02825 0.79 +0.3
562,409 - +0.5
562,416 + -0.1
562,423 + +0.1
562,424 - +1.2
562,424 - +0.6
562,424 - -0.5
562,424 - -0.2
562,424 - -0.4
562,522 + +0.2
562,530 - -0.3
562,530 - +0.4
562,592 + CSW01_02830 0.14 -0.1
562,633 + CSW01_02830 0.18 +0.4
562,697 + CSW01_02830 0.25 -0.3
562,705 - CSW01_02830 0.26 +0.9
562,705 - CSW01_02830 0.26 -0.2
562,714 - CSW01_02830 0.27 -1.1
562,786 - CSW01_02830 0.34 +0.7

Or see this region's nucleotide sequence