Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02670

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02665 and CSW01_02670 are separated by 177 nucleotidesCSW01_02670 and CSW01_02675 are separated by 47 nucleotidesCSW01_02675 and CSW01_02680 are separated by 30 nucleotides CSW01_02665: CSW01_02665 - peptidase M23, at 534,158 to 535,438 _02665 CSW01_02670: CSW01_02670 - hypothetical protein, at 535,616 to 535,843 _02670 CSW01_02675: CSW01_02675 - hypothetical protein, at 535,891 to 536,259 _02675 CSW01_02680: CSW01_02680 - WYL domain-containing protein, at 536,290 to 537,024 _02680 Position (kb) 535 536Strain fitness (log2 ratio) -1 0 1at 534.664 kb on + strand, within CSW01_02665at 534.671 kb on + strand, within CSW01_02665at 534.799 kb on + strand, within CSW01_02665at 534.817 kb on - strand, within CSW01_02665at 534.840 kb on - strand, within CSW01_02665at 534.898 kb on + strand, within CSW01_02665at 534.919 kb on - strand, within CSW01_02665at 534.921 kb on + strand, within CSW01_02665at 534.929 kb on - strand, within CSW01_02665at 534.942 kb on - strand, within CSW01_02665at 534.947 kb on + strand, within CSW01_02665at 534.948 kb on - strand, within CSW01_02665at 534.952 kb on + strand, within CSW01_02665at 534.955 kb on - strand, within CSW01_02665at 534.982 kb on + strand, within CSW01_02665at 534.983 kb on - strand, within CSW01_02665at 535.066 kb on + strand, within CSW01_02665at 535.119 kb on - strand, within CSW01_02665at 535.147 kb on - strand, within CSW01_02665at 535.149 kb on - strand, within CSW01_02665at 535.186 kb on - strand, within CSW01_02665at 535.273 kb on - strand, within CSW01_02665at 535.291 kb on + strand, within CSW01_02665at 535.319 kb on + strandat 535.359 kb on - strandat 535.503 kb on + strandat 535.535 kb on + strandat 535.535 kb on + strandat 535.640 kb on + strand, within CSW01_02670at 535.648 kb on - strand, within CSW01_02670at 535.648 kb on - strand, within CSW01_02670at 535.652 kb on - strand, within CSW01_02670at 535.675 kb on - strand, within CSW01_02670at 535.734 kb on - strand, within CSW01_02670at 535.898 kb on - strandat 535.898 kb on - strandat 535.902 kb on + strandat 535.946 kb on - strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.955 kb on + strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.989 kb on - strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.017 kb on + strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.081 kb on - strand, within CSW01_02675at 536.091 kb on - strand, within CSW01_02675at 536.148 kb on + strand, within CSW01_02675at 536.189 kb on + strand, within CSW01_02675at 536.226 kb on - strandat 536.238 kb on + strandat 536.239 kb on - strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on - strandat 536.264 kb on + strandat 536.264 kb on + strandat 536.271 kb on + strandat 536.271 kb on + strandat 536.279 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.365 kb on + strand, within CSW01_02680at 536.385 kb on - strand, within CSW01_02680at 536.404 kb on + strand, within CSW01_02680at 536.412 kb on - strand, within CSW01_02680at 536.419 kb on - strand, within CSW01_02680at 536.455 kb on + strand, within CSW01_02680at 536.464 kb on - strand, within CSW01_02680at 536.485 kb on - strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.560 kb on + strand, within CSW01_02680at 536.582 kb on + strand, within CSW01_02680at 536.679 kb on - strand, within CSW01_02680at 536.723 kb on - strand, within CSW01_02680at 536.751 kb on + strand, within CSW01_02680

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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534,664 + CSW01_02665 0.40 +0.1
534,671 + CSW01_02665 0.40 -0.1
534,799 + CSW01_02665 0.50 +0.1
534,817 - CSW01_02665 0.51 +0.3
534,840 - CSW01_02665 0.53 -0.8
534,898 + CSW01_02665 0.58 +0.4
534,919 - CSW01_02665 0.59 -0.6
534,921 + CSW01_02665 0.60 +1.7
534,929 - CSW01_02665 0.60 +0.3
534,942 - CSW01_02665 0.61 +0.3
534,947 + CSW01_02665 0.62 -0.1
534,948 - CSW01_02665 0.62 +0.7
534,952 + CSW01_02665 0.62 -0.4
534,955 - CSW01_02665 0.62 +0.1
534,982 + CSW01_02665 0.64 -0.2
534,983 - CSW01_02665 0.64 +0.5
535,066 + CSW01_02665 0.71 -0.4
535,119 - CSW01_02665 0.75 +0.8
535,147 - CSW01_02665 0.77 -0.5
535,149 - CSW01_02665 0.77 -0.1
535,186 - CSW01_02665 0.80 -0.7
535,273 - CSW01_02665 0.87 +0.2
535,291 + CSW01_02665 0.88 +0.4
535,319 + +0.2
535,359 - +0.1
535,503 + +0.2
535,535 + +0.1
535,535 + +0.3
535,640 + CSW01_02670 0.11 -0.3
535,648 - CSW01_02670 0.14 -1.2
535,648 - CSW01_02670 0.14 -0.9
535,652 - CSW01_02670 0.16 -0.2
535,675 - CSW01_02670 0.26 -0.3
535,734 - CSW01_02670 0.52 +0.1
535,898 - -0.3
535,898 - -0.0
535,902 + +0.1
535,946 - CSW01_02675 0.15 -0.3
535,948 + CSW01_02675 0.15 +0.2
535,948 + CSW01_02675 0.15 +0.4
535,948 + CSW01_02675 0.15 -0.3
535,955 + CSW01_02675 0.17 +0.5
535,956 - CSW01_02675 0.18 +0.7
535,956 - CSW01_02675 0.18 -0.9
535,956 - CSW01_02675 0.18 +0.2
535,989 - CSW01_02675 0.27 +0.7
536,016 + CSW01_02675 0.34 -0.0
536,016 + CSW01_02675 0.34 +0.2
536,016 + CSW01_02675 0.34 -0.5
536,017 + CSW01_02675 0.34 -0.2
536,024 - CSW01_02675 0.36 -0.2
536,024 - CSW01_02675 0.36 -0.2
536,024 - CSW01_02675 0.36 +0.2
536,024 - CSW01_02675 0.36 +0.7
536,024 - CSW01_02675 0.36 +1.4
536,081 - CSW01_02675 0.51 -0.4
536,091 - CSW01_02675 0.54 +0.3
536,148 + CSW01_02675 0.70 +0.3
536,189 + CSW01_02675 0.81 -0.1
536,226 - -0.3
536,238 + -0.3
536,239 - +0.6
536,243 + -0.1
536,243 + -0.6
536,243 + -0.4
536,243 - -0.0
536,264 + +0.2
536,264 + +1.1
536,271 + +0.4
536,271 + +0.5
536,279 - +0.3
536,326 - -0.4
536,326 - +0.3
536,326 - -0.0
536,365 + CSW01_02680 0.10 +0.4
536,385 - CSW01_02680 0.13 +0.4
536,404 + CSW01_02680 0.16 +0.1
536,412 - CSW01_02680 0.17 -0.7
536,419 - CSW01_02680 0.18 +0.1
536,455 + CSW01_02680 0.22 -0.1
536,464 - CSW01_02680 0.24 -0.2
536,485 - CSW01_02680 0.27 +0.7
536,526 + CSW01_02680 0.32 -1.5
536,526 + CSW01_02680 0.32 -1.1
536,526 + CSW01_02680 0.32 -0.4
536,534 - CSW01_02680 0.33 -0.2
536,534 - CSW01_02680 0.33 -0.1
536,560 + CSW01_02680 0.37 -0.7
536,582 + CSW01_02680 0.40 -0.3
536,679 - CSW01_02680 0.53 -0.3
536,723 - CSW01_02680 0.59 +0.7
536,751 + CSW01_02680 0.63 +0.5

Or see this region's nucleotide sequence