Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02425

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02420 and CSW01_02425 are separated by 220 nucleotidesCSW01_02425 and CSW01_02430 overlap by 7 nucleotidesCSW01_02430 and CSW01_02435 are separated by 69 nucleotides CSW01_02420: CSW01_02420 - glutaminase, at 484,069 to 484,989 _02420 CSW01_02425: CSW01_02425 - YggW family oxidoreductase, at 485,210 to 486,385 _02425 CSW01_02430: CSW01_02430 - non-canonical purine NTP pyrophosphatase, at 486,379 to 486,981 _02430 CSW01_02435: CSW01_02435 - DUF4426 domain-containing protein, at 487,051 to 487,482 _02435 Position (kb) 485 486 487Strain fitness (log2 ratio) -2 -1 0 1 2at 484.285 kb on - strand, within CSW01_02420at 484.302 kb on - strand, within CSW01_02420at 484.313 kb on - strand, within CSW01_02420at 484.323 kb on - strand, within CSW01_02420at 484.379 kb on - strand, within CSW01_02420at 484.421 kb on + strand, within CSW01_02420at 484.454 kb on + strand, within CSW01_02420at 484.455 kb on + strand, within CSW01_02420at 484.476 kb on + strand, within CSW01_02420at 484.502 kb on - strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.685 kb on - strand, within CSW01_02420at 484.742 kb on + strand, within CSW01_02420at 484.769 kb on - strand, within CSW01_02420at 484.807 kb on - strand, within CSW01_02420at 484.920 kb on - strandat 484.954 kb on - strandat 485.040 kb on + strandat 485.040 kb on + strandat 485.109 kb on + strandat 485.109 kb on + strandat 485.109 kb on + strandat 485.235 kb on + strandat 485.235 kb on + strandat 485.243 kb on - strandat 485.285 kb on + strandat 485.327 kb on + strandat 485.327 kb on + strandat 485.327 kb on + strandat 485.335 kb on - strand, within CSW01_02425at 485.393 kb on + strand, within CSW01_02425at 485.412 kb on - strand, within CSW01_02425at 485.489 kb on + strand, within CSW01_02425at 485.539 kb on - strand, within CSW01_02425at 485.586 kb on + strand, within CSW01_02425at 485.637 kb on - strand, within CSW01_02425at 485.671 kb on + strand, within CSW01_02425at 485.757 kb on + strand, within CSW01_02425at 485.784 kb on - strand, within CSW01_02425at 485.841 kb on + strand, within CSW01_02425at 485.952 kb on + strand, within CSW01_02425at 486.004 kb on - strand, within CSW01_02425at 486.024 kb on - strand, within CSW01_02425at 486.099 kb on + strand, within CSW01_02425at 486.166 kb on - strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.236 kb on - strand, within CSW01_02425at 486.272 kb on - strandat 486.348 kb on + strandat 486.425 kb on + strandat 486.469 kb on - strand, within CSW01_02430at 486.510 kb on - strand, within CSW01_02430at 486.517 kb on + strand, within CSW01_02430at 486.613 kb on + strand, within CSW01_02430at 486.621 kb on - strand, within CSW01_02430at 486.657 kb on - strand, within CSW01_02430at 486.738 kb on - strand, within CSW01_02430at 486.908 kb on - strand, within CSW01_02430at 486.987 kb on + strandat 487.028 kb on - strandat 487.048 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.069 kb on - strandat 487.069 kb on - strandat 487.069 kb on - strandat 487.099 kb on + strand, within CSW01_02435at 487.129 kb on + strand, within CSW01_02435at 487.129 kb on + strand, within CSW01_02435at 487.187 kb on + strand, within CSW01_02435at 487.187 kb on + strand, within CSW01_02435at 487.197 kb on + strand, within CSW01_02435at 487.230 kb on + strand, within CSW01_02435at 487.268 kb on + strand, within CSW01_02435at 487.343 kb on - strand, within CSW01_02435at 487.353 kb on + strand, within CSW01_02435at 487.375 kb on + strand, within CSW01_02435

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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484,285 - CSW01_02420 0.23 -0.2
484,302 - CSW01_02420 0.25 +0.5
484,313 - CSW01_02420 0.26 -0.5
484,323 - CSW01_02420 0.28 +0.3
484,379 - CSW01_02420 0.34 -2.7
484,421 + CSW01_02420 0.38 -0.0
484,454 + CSW01_02420 0.42 +0.4
484,455 + CSW01_02420 0.42 +0.6
484,476 + CSW01_02420 0.44 -0.7
484,502 - CSW01_02420 0.47 +0.5
484,667 + CSW01_02420 0.65 -1.6
484,667 + CSW01_02420 0.65 -1.5
484,667 + CSW01_02420 0.65 -0.6
484,667 + CSW01_02420 0.65 +0.2
484,667 + CSW01_02420 0.65 -0.6
484,675 - CSW01_02420 0.66 +0.5
484,675 - CSW01_02420 0.66 +0.2
484,675 - CSW01_02420 0.66 +0.0
484,675 - CSW01_02420 0.66 -0.4
484,675 - CSW01_02420 0.66 +0.1
484,675 - CSW01_02420 0.66 +0.1
484,675 - CSW01_02420 0.66 +0.1
484,675 - CSW01_02420 0.66 +0.0
484,675 - CSW01_02420 0.66 +1.0
484,675 - CSW01_02420 0.66 -0.5
484,685 - CSW01_02420 0.67 -0.0
484,742 + CSW01_02420 0.73 -0.9
484,769 - CSW01_02420 0.76 -0.4
484,807 - CSW01_02420 0.80 +2.1
484,920 - +0.1
484,954 - +1.0
485,040 + -0.4
485,040 + -0.7
485,109 + +0.9
485,109 + -0.8
485,109 + -0.0
485,235 + +0.3
485,235 + +0.3
485,243 - -1.9
485,285 + -0.3
485,327 + -1.0
485,327 + +0.5
485,327 + -1.7
485,335 - CSW01_02425 0.11 -1.4
485,393 + CSW01_02425 0.16 -0.7
485,412 - CSW01_02425 0.17 -0.3
485,489 + CSW01_02425 0.24 +1.9
485,539 - CSW01_02425 0.28 -0.7
485,586 + CSW01_02425 0.32 +0.6
485,637 - CSW01_02425 0.36 +1.3
485,671 + CSW01_02425 0.39 -0.5
485,757 + CSW01_02425 0.47 -0.7
485,784 - CSW01_02425 0.49 -0.9
485,841 + CSW01_02425 0.54 -0.6
485,952 + CSW01_02425 0.63 -0.8
486,004 - CSW01_02425 0.68 +0.0
486,024 - CSW01_02425 0.69 -0.6
486,099 + CSW01_02425 0.76 +0.0
486,166 - CSW01_02425 0.81 +0.9
486,213 + CSW01_02425 0.85 +1.8
486,213 + CSW01_02425 0.85 -0.2
486,213 + CSW01_02425 0.85 +0.1
486,213 + CSW01_02425 0.85 -0.2
486,221 - CSW01_02425 0.86 -1.3
486,221 - CSW01_02425 0.86 -0.9
486,221 - CSW01_02425 0.86 -1.1
486,221 - CSW01_02425 0.86 -1.4
486,221 - CSW01_02425 0.86 +0.5
486,236 - CSW01_02425 0.87 -0.4
486,272 - -1.5
486,348 + -1.1
486,425 + +0.5
486,469 - CSW01_02430 0.15 +0.3
486,510 - CSW01_02430 0.22 -0.3
486,517 + CSW01_02430 0.23 -0.2
486,613 + CSW01_02430 0.39 -2.0
486,621 - CSW01_02430 0.40 -0.8
486,657 - CSW01_02430 0.46 +0.0
486,738 - CSW01_02430 0.60 +0.3
486,908 - CSW01_02430 0.88 -0.5
486,987 + -0.6
487,028 - -0.0
487,048 + -0.4
487,061 + -0.0
487,061 + +0.3
487,061 + +0.3
487,061 + -0.2
487,061 + -0.8
487,061 + +0.1
487,069 - -0.1
487,069 - +0.5
487,069 - -0.2
487,099 + CSW01_02435 0.11 -0.5
487,129 + CSW01_02435 0.18 -0.5
487,129 + CSW01_02435 0.18 +0.5
487,187 + CSW01_02435 0.31 -0.6
487,187 + CSW01_02435 0.31 -0.4
487,197 + CSW01_02435 0.34 -0.4
487,230 + CSW01_02435 0.41 -1.5
487,268 + CSW01_02435 0.50 -0.8
487,343 - CSW01_02435 0.68 +1.5
487,353 + CSW01_02435 0.70 +0.3
487,375 + CSW01_02435 0.75 -0.1

Or see this region's nucleotide sequence