Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02105 and CSW01_02110 overlap by 4 nucleotides CSW01_02110 and CSW01_02115 overlap by 8 nucleotides CSW01_02115 and CSW01_02120 are separated by 14 nucleotides CSW01_02120 and CSW01_02125 are separated by 4 nucleotides CSW01_02125 and CSW01_02130 overlap by 22 nucleotides
CSW01_02105: CSW01_02105 - MSHA biogenesis protein MshI, at 424,037 to 425,476
_02105
CSW01_02110: CSW01_02110 - MSHA biogenesis protein MshJ, at 425,473 to 426,123
_02110
CSW01_02115: CSW01_02115 - MSHA biogenesis protein MshK, at 426,116 to 426,433
_02115
CSW01_02120: CSW01_02120 - pilus (MSHA type) biogenesis protein MshL, at 426,448 to 428,127
_02120
CSW01_02125: CSW01_02125 - MSHA biogenesis protein MshM, at 428,132 to 428,977
_02125
CSW01_02130: CSW01_02130 - MSHA biogenesis protein MshN, at 428,956 to 430,125
_02130
Position (kb) 426
427
428
429 Strain fitness (log2 ratio) -1
0
1
2
3 at 425.547 kb on + strand, within CSW01_02110 at 425.547 kb on + strand, within CSW01_02110 at 425.555 kb on - strand, within CSW01_02110 at 425.555 kb on - strand, within CSW01_02110 at 425.555 kb on - strand, within CSW01_02110 at 425.574 kb on - strand, within CSW01_02110 at 425.585 kb on + strand, within CSW01_02110 at 425.597 kb on - strand, within CSW01_02110 at 425.600 kb on + strand, within CSW01_02110 at 425.600 kb on + strand, within CSW01_02110 at 425.600 kb on + strand, within CSW01_02110 at 425.600 kb on + strand, within CSW01_02110 at 425.600 kb on + strand, within CSW01_02110 at 425.600 kb on + strand, within CSW01_02110 at 425.600 kb on + strand, within CSW01_02110 at 425.600 kb on + strand, within CSW01_02110 at 425.600 kb on + strand, within CSW01_02110 at 425.608 kb on - strand, within CSW01_02110 at 425.608 kb on - strand, within CSW01_02110 at 425.608 kb on - strand, within CSW01_02110 at 425.608 kb on - strand, within CSW01_02110 at 425.608 kb on - strand, within CSW01_02110 at 425.723 kb on + strand, within CSW01_02110 at 425.811 kb on - strand, within CSW01_02110 at 425.875 kb on - strand, within CSW01_02110 at 425.953 kb on + strand, within CSW01_02110 at 425.989 kb on + strand, within CSW01_02110 at 426.004 kb on - strand, within CSW01_02110 at 426.063 kb on + strand at 426.071 kb on - strand at 426.081 kb on + strand at 426.082 kb on + strand at 426.096 kb on - strand at 426.098 kb on + strand at 426.098 kb on + strand at 426.098 kb on + strand at 426.128 kb on + strand at 426.131 kb on - strand at 426.155 kb on + strand, within CSW01_02115 at 426.184 kb on - strand, within CSW01_02115 at 426.188 kb on + strand, within CSW01_02115 at 426.188 kb on + strand, within CSW01_02115 at 426.206 kb on - strand, within CSW01_02115 at 426.251 kb on + strand, within CSW01_02115 at 426.258 kb on + strand, within CSW01_02115 at 426.261 kb on - strand, within CSW01_02115 at 426.293 kb on - strand, within CSW01_02115 at 426.293 kb on - strand, within CSW01_02115 at 426.314 kb on + strand, within CSW01_02115 at 426.314 kb on + strand, within CSW01_02115 at 426.314 kb on + strand, within CSW01_02115 at 426.314 kb on + strand, within CSW01_02115 at 426.319 kb on + strand, within CSW01_02115 at 426.321 kb on + strand, within CSW01_02115 at 426.322 kb on - strand, within CSW01_02115 at 426.386 kb on + strand, within CSW01_02115 at 426.386 kb on + strand, within CSW01_02115 at 426.394 kb on - strand, within CSW01_02115 at 426.394 kb on - strand, within CSW01_02115 at 426.420 kb on + strand at 426.428 kb on - strand at 426.428 kb on - strand at 426.428 kb on - strand at 426.467 kb on + strand at 426.515 kb on - strand at 426.532 kb on + strand at 426.639 kb on + strand, within CSW01_02120 at 426.693 kb on - strand, within CSW01_02120 at 426.711 kb on + strand, within CSW01_02120 at 426.718 kb on + strand, within CSW01_02120 at 426.718 kb on + strand, within CSW01_02120 at 426.718 kb on + strand, within CSW01_02120 at 426.763 kb on + strand, within CSW01_02120 at 426.779 kb on + strand, within CSW01_02120 at 426.779 kb on + strand, within CSW01_02120 at 426.779 kb on + strand, within CSW01_02120 at 426.787 kb on - strand, within CSW01_02120 at 426.796 kb on + strand, within CSW01_02120 at 426.804 kb on - strand, within CSW01_02120 at 426.824 kb on + strand, within CSW01_02120 at 426.824 kb on + strand, within CSW01_02120 at 426.824 kb on + strand, within CSW01_02120 at 426.832 kb on - strand, within CSW01_02120 at 426.832 kb on - strand, within CSW01_02120 at 426.832 kb on - strand, within CSW01_02120 at 426.929 kb on + strand, within CSW01_02120 at 426.930 kb on - strand, within CSW01_02120 at 427.036 kb on + strand, within CSW01_02120 at 427.162 kb on + strand, within CSW01_02120 at 427.195 kb on + strand, within CSW01_02120 at 427.195 kb on + strand, within CSW01_02120 at 427.195 kb on + strand, within CSW01_02120 at 427.195 kb on + strand, within CSW01_02120 at 427.195 kb on + strand, within CSW01_02120 at 427.195 kb on + strand, within CSW01_02120 at 427.195 kb on + strand, within CSW01_02120 at 427.196 kb on + strand, within CSW01_02120 at 427.196 kb on + strand, within CSW01_02120 at 427.196 kb on + strand, within CSW01_02120 at 427.203 kb on - strand, within CSW01_02120 at 427.204 kb on - strand, within CSW01_02120 at 427.204 kb on - strand, within CSW01_02120 at 427.204 kb on - strand, within CSW01_02120 at 427.204 kb on - strand, within CSW01_02120 at 427.204 kb on - strand, within CSW01_02120 at 427.318 kb on - strand, within CSW01_02120 at 427.322 kb on + strand, within CSW01_02120 at 427.344 kb on + strand, within CSW01_02120 at 427.344 kb on + strand, within CSW01_02120 at 427.345 kb on + strand, within CSW01_02120 at 427.358 kb on + strand, within CSW01_02120 at 427.392 kb on - strand, within CSW01_02120 at 427.393 kb on - strand, within CSW01_02120 at 427.399 kb on + strand, within CSW01_02120 at 427.427 kb on + strand, within CSW01_02120 at 427.442 kb on + strand, within CSW01_02120 at 427.510 kb on - strand, within CSW01_02120 at 427.541 kb on + strand, within CSW01_02120 at 427.549 kb on + strand, within CSW01_02120 at 427.612 kb on + strand, within CSW01_02120 at 427.620 kb on - strand, within CSW01_02120 at 427.652 kb on - strand, within CSW01_02120 at 427.738 kb on + strand, within CSW01_02120 at 427.748 kb on + strand, within CSW01_02120 at 427.784 kb on - strand, within CSW01_02120 at 427.784 kb on - strand, within CSW01_02120 at 427.784 kb on - strand, within CSW01_02120 at 427.892 kb on + strand, within CSW01_02120 at 427.909 kb on + strand, within CSW01_02120 at 427.920 kb on + strand, within CSW01_02120 at 427.928 kb on - strand, within CSW01_02120 at 427.936 kb on - strand, within CSW01_02120 at 427.997 kb on + strand at 428.005 kb on - strand at 428.055 kb on + strand at 428.063 kb on - strand at 428.082 kb on - strand at 428.108 kb on - strand at 428.109 kb on - strand at 428.151 kb on + strand at 428.151 kb on + strand at 428.159 kb on - strand at 428.239 kb on - strand, within CSW01_02125 at 428.279 kb on + strand, within CSW01_02125 at 428.340 kb on + strand, within CSW01_02125 at 428.364 kb on + strand, within CSW01_02125 at 428.372 kb on - strand, within CSW01_02125 at 428.385 kb on + strand, within CSW01_02125 at 428.385 kb on + strand, within CSW01_02125 at 428.392 kb on - strand, within CSW01_02125 at 428.392 kb on - strand, within CSW01_02125 at 428.392 kb on - strand, within CSW01_02125 at 428.416 kb on - strand, within CSW01_02125 at 428.431 kb on + strand, within CSW01_02125 at 428.452 kb on + strand, within CSW01_02125 at 428.452 kb on + strand, within CSW01_02125 at 428.452 kb on - strand, within CSW01_02125 at 428.467 kb on + strand, within CSW01_02125 at 428.505 kb on - strand, within CSW01_02125 at 428.506 kb on + strand, within CSW01_02125 at 428.511 kb on + strand, within CSW01_02125 at 428.534 kb on - strand, within CSW01_02125 at 428.588 kb on - strand, within CSW01_02125 at 428.588 kb on - strand, within CSW01_02125 at 428.615 kb on + strand, within CSW01_02125 at 428.764 kb on + strand, within CSW01_02125 at 428.764 kb on + strand, within CSW01_02125 at 428.764 kb on + strand, within CSW01_02125 at 428.772 kb on - strand, within CSW01_02125 at 428.772 kb on - strand, within CSW01_02125 at 428.772 kb on - strand, within CSW01_02125 at 428.809 kb on - strand, within CSW01_02125 at 428.846 kb on + strand, within CSW01_02125 at 428.854 kb on - strand, within CSW01_02125 at 428.923 kb on - strand at 428.923 kb on - strand at 428.923 kb on - strand at 428.970 kb on + strand at 428.997 kb on + strand at 429.060 kb on + strand at 429.081 kb on + strand, within CSW01_02130 at 429.088 kb on - strand, within CSW01_02130 at 429.098 kb on + strand, within CSW01_02130 at 429.098 kb on + strand, within CSW01_02130 at 429.118 kb on - strand, within CSW01_02130
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A remove 425,547 + CSW01_02110 0.11 +0.7 425,547 + CSW01_02110 0.11 +0.7 425,555 - CSW01_02110 0.13 +1.5 425,555 - CSW01_02110 0.13 +0.7 425,555 - CSW01_02110 0.13 +1.2 425,574 - CSW01_02110 0.16 +1.9 425,585 + CSW01_02110 0.17 +1.2 425,597 - CSW01_02110 0.19 +1.5 425,600 + CSW01_02110 0.20 +0.5 425,600 + CSW01_02110 0.20 +3.0 425,600 + CSW01_02110 0.20 +0.4 425,600 + CSW01_02110 0.20 +0.2 425,600 + CSW01_02110 0.20 +0.6 425,600 + CSW01_02110 0.20 +1.4 425,600 + CSW01_02110 0.20 +1.3 425,600 + CSW01_02110 0.20 +0.6 425,600 + CSW01_02110 0.20 +0.8 425,608 - CSW01_02110 0.21 +0.1 425,608 - CSW01_02110 0.21 +1.2 425,608 - CSW01_02110 0.21 +0.9 425,608 - CSW01_02110 0.21 +0.7 425,608 - CSW01_02110 0.21 +1.2 425,723 + CSW01_02110 0.38 +1.1 425,811 - CSW01_02110 0.52 +0.4 425,875 - CSW01_02110 0.62 +0.8 425,953 + CSW01_02110 0.74 -0.2 425,989 + CSW01_02110 0.79 +0.4 426,004 - CSW01_02110 0.82 +0.8 426,063 + +0.8 426,071 - +0.6 426,081 + +0.1 426,082 + +0.5 426,096 - +1.1 426,098 + +0.5 426,098 + +1.2 426,098 + +0.4 426,128 + +0.7 426,131 - +0.8 426,155 + CSW01_02115 0.12 +1.0 426,184 - CSW01_02115 0.21 +0.8 426,188 + CSW01_02115 0.23 +1.2 426,188 + CSW01_02115 0.23 +1.4 426,206 - CSW01_02115 0.28 +0.8 426,251 + CSW01_02115 0.42 +0.4 426,258 + CSW01_02115 0.45 +0.4 426,261 - CSW01_02115 0.46 +0.7 426,293 - CSW01_02115 0.56 +1.2 426,293 - CSW01_02115 0.56 +1.1 426,314 + CSW01_02115 0.62 +0.8 426,314 + CSW01_02115 0.62 +0.1 426,314 + CSW01_02115 0.62 +0.5 426,314 + CSW01_02115 0.62 +0.8 426,319 + CSW01_02115 0.64 +0.6 426,321 + CSW01_02115 0.64 +0.5 426,322 - CSW01_02115 0.65 +0.6 426,386 + CSW01_02115 0.85 +0.6 426,386 + CSW01_02115 0.85 +0.6 426,394 - CSW01_02115 0.87 +0.4 426,394 - CSW01_02115 0.87 +1.2 426,420 + -1.2 426,428 - +1.3 426,428 - -0.7 426,428 - +0.8 426,467 + +1.5 426,515 - +0.6 426,532 + +0.6 426,639 + CSW01_02120 0.11 +0.5 426,693 - CSW01_02120 0.15 +0.0 426,711 + CSW01_02120 0.16 +0.4 426,718 + CSW01_02120 0.16 -0.7 426,718 + CSW01_02120 0.16 +0.8 426,718 + CSW01_02120 0.16 +1.4 426,763 + CSW01_02120 0.19 +0.9 426,779 + CSW01_02120 0.20 +1.0 426,779 + CSW01_02120 0.20 +0.9 426,779 + CSW01_02120 0.20 +0.1 426,787 - CSW01_02120 0.20 +0.8 426,796 + CSW01_02120 0.21 +0.5 426,804 - CSW01_02120 0.21 +1.1 426,824 + CSW01_02120 0.22 +0.2 426,824 + CSW01_02120 0.22 +0.3 426,824 + CSW01_02120 0.22 +0.8 426,832 - CSW01_02120 0.23 +2.7 426,832 - CSW01_02120 0.23 +2.0 426,832 - CSW01_02120 0.23 +0.9 426,929 + CSW01_02120 0.29 +0.3 426,930 - CSW01_02120 0.29 +1.0 427,036 + CSW01_02120 0.35 +0.9 427,162 + CSW01_02120 0.42 +0.7 427,195 + CSW01_02120 0.44 +0.7 427,195 + CSW01_02120 0.44 +0.8 427,195 + CSW01_02120 0.44 +1.6 427,195 + CSW01_02120 0.44 +0.5 427,195 + CSW01_02120 0.44 +0.6 427,195 + CSW01_02120 0.44 +0.7 427,195 + CSW01_02120 0.44 +0.7 427,196 + CSW01_02120 0.45 +0.8 427,196 + CSW01_02120 0.45 +0.5 427,196 + CSW01_02120 0.45 +0.6 427,203 - CSW01_02120 0.45 +0.7 427,204 - CSW01_02120 0.45 +1.0 427,204 - CSW01_02120 0.45 +0.1 427,204 - CSW01_02120 0.45 +1.5 427,204 - CSW01_02120 0.45 +0.8 427,204 - CSW01_02120 0.45 +0.1 427,318 - CSW01_02120 0.52 +0.2 427,322 + CSW01_02120 0.52 +0.5 427,344 + CSW01_02120 0.53 -0.4 427,344 + CSW01_02120 0.53 +0.4 427,345 + CSW01_02120 0.53 +0.7 427,358 + CSW01_02120 0.54 +0.8 427,392 - CSW01_02120 0.56 +0.7 427,393 - CSW01_02120 0.56 +0.4 427,399 + CSW01_02120 0.57 +0.5 427,427 + CSW01_02120 0.58 +1.0 427,442 + CSW01_02120 0.59 +0.1 427,510 - CSW01_02120 0.63 +0.6 427,541 + CSW01_02120 0.65 +1.3 427,549 + CSW01_02120 0.66 -1.0 427,612 + CSW01_02120 0.69 +1.0 427,620 - CSW01_02120 0.70 +2.6 427,652 - CSW01_02120 0.72 +0.1 427,738 + CSW01_02120 0.77 +0.5 427,748 + CSW01_02120 0.77 +1.7 427,784 - CSW01_02120 0.80 +0.3 427,784 - CSW01_02120 0.80 +0.4 427,784 - CSW01_02120 0.80 +0.7 427,892 + CSW01_02120 0.86 +1.2 427,909 + CSW01_02120 0.87 +0.7 427,920 + CSW01_02120 0.88 +0.6 427,928 - CSW01_02120 0.88 +0.2 427,936 - CSW01_02120 0.89 +0.6 427,997 + +0.1 428,005 - +0.5 428,055 + +1.0 428,063 - +1.1 428,082 - +0.4 428,108 - +0.5 428,109 - +0.2 428,151 + -0.4 428,151 + +0.4 428,159 - +0.3 428,239 - CSW01_02125 0.13 +1.2 428,279 + CSW01_02125 0.17 +0.3 428,340 + CSW01_02125 0.25 +0.7 428,364 + CSW01_02125 0.27 -0.5 428,372 - CSW01_02125 0.28 +0.5 428,385 + CSW01_02125 0.30 +0.1 428,385 + CSW01_02125 0.30 +1.5 428,392 - CSW01_02125 0.31 +0.0 428,392 - CSW01_02125 0.31 +1.0 428,392 - CSW01_02125 0.31 +1.7 428,416 - CSW01_02125 0.34 +0.6 428,431 + CSW01_02125 0.35 +0.2 428,452 + CSW01_02125 0.38 +0.4 428,452 + CSW01_02125 0.38 +0.2 428,452 - CSW01_02125 0.38 +0.7 428,467 + CSW01_02125 0.40 +0.5 428,505 - CSW01_02125 0.44 +0.3 428,506 + CSW01_02125 0.44 +0.6 428,511 + CSW01_02125 0.45 +0.7 428,534 - CSW01_02125 0.48 +0.9 428,588 - CSW01_02125 0.54 +1.1 428,588 - CSW01_02125 0.54 +1.2 428,615 + CSW01_02125 0.57 -0.4 428,764 + CSW01_02125 0.75 -0.0 428,764 + CSW01_02125 0.75 +1.0 428,764 + CSW01_02125 0.75 +0.1 428,772 - CSW01_02125 0.76 +1.0 428,772 - CSW01_02125 0.76 +1.2 428,772 - CSW01_02125 0.76 +0.6 428,809 - CSW01_02125 0.80 +0.6 428,846 + CSW01_02125 0.84 +0.1 428,854 - CSW01_02125 0.85 +1.3 428,923 - +0.6 428,923 - +0.1 428,923 - +0.9 428,970 + +0.6 428,997 + +1.2 429,060 + +0.5 429,081 + CSW01_02130 0.11 +0.4 429,088 - CSW01_02130 0.11 +0.8 429,098 + CSW01_02130 0.12 +0.9 429,098 + CSW01_02130 0.12 +0.7 429,118 - CSW01_02130 0.14 +0.5
Or see this region's nucleotide sequence