Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00955

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00950 and CSW01_00955 are separated by 416 nucleotidesCSW01_00955 and CSW01_00960 are separated by 248 nucleotides CSW01_00950: CSW01_00950 - transcriptional regulator, at 177,862 to 178,425 _00950 CSW01_00955: CSW01_00955 - hypothetical protein, at 178,842 to 179,090 _00955 CSW01_00960: CSW01_00960 - patatin, at 179,339 to 180,406 _00960 Position (kb) 178 179 180Strain fitness (log2 ratio) -2 -1 0 1at 177.861 kb on + strandat 177.867 kb on - strandat 177.874 kb on + strandat 177.879 kb on + strandat 177.882 kb on - strandat 177.884 kb on + strandat 177.884 kb on + strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.894 kb on + strandat 177.961 kb on - strand, within CSW01_00950at 177.978 kb on + strand, within CSW01_00950at 177.996 kb on - strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.051 kb on + strand, within CSW01_00950at 178.052 kb on + strand, within CSW01_00950at 178.088 kb on - strand, within CSW01_00950at 178.155 kb on - strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.163 kb on + strand, within CSW01_00950at 178.166 kb on - strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.174 kb on + strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.199 kb on - strand, within CSW01_00950at 178.201 kb on + strand, within CSW01_00950at 178.209 kb on + strand, within CSW01_00950at 178.211 kb on - strand, within CSW01_00950at 178.303 kb on - strand, within CSW01_00950at 178.328 kb on + strand, within CSW01_00950at 178.329 kb on + strand, within CSW01_00950at 178.329 kb on + strand, within CSW01_00950at 178.330 kb on + strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.356 kb on + strand, within CSW01_00950at 178.389 kb on + strandat 178.523 kb on + strandat 178.530 kb on + strandat 178.538 kb on + strandat 178.546 kb on - strandat 178.565 kb on + strandat 178.565 kb on + strandat 178.644 kb on - strandat 178.715 kb on + strandat 178.725 kb on + strandat 178.745 kb on + strandat 178.784 kb on - strandat 178.784 kb on - strandat 178.870 kb on - strand, within CSW01_00955at 178.870 kb on - strand, within CSW01_00955at 178.878 kb on + strand, within CSW01_00955at 178.899 kb on - strand, within CSW01_00955at 178.966 kb on + strand, within CSW01_00955at 178.966 kb on + strand, within CSW01_00955at 178.974 kb on - strand, within CSW01_00955at 179.011 kb on - strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.020 kb on + strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.028 kb on - strand, within CSW01_00955at 179.055 kb on + strand, within CSW01_00955at 179.055 kb on + strand, within CSW01_00955at 179.097 kb on + strandat 179.097 kb on + strandat 179.148 kb on - strandat 179.201 kb on + strandat 179.229 kb on + strandat 179.229 kb on + strandat 179.229 kb on + strandat 179.230 kb on + strandat 179.230 kb on + strandat 179.237 kb on - strandat 179.237 kb on - strandat 179.237 kb on - strandat 179.237 kb on - strandat 179.241 kb on + strandat 179.250 kb on - strandat 179.251 kb on + strandat 179.251 kb on + strandat 179.251 kb on + strandat 179.251 kb on + strandat 179.270 kb on - strandat 179.312 kb on - strandat 179.314 kb on - strandat 179.355 kb on + strandat 179.358 kb on + strandat 179.422 kb on - strandat 179.499 kb on + strand, within CSW01_00960at 179.499 kb on + strand, within CSW01_00960at 179.517 kb on - strand, within CSW01_00960at 179.545 kb on + strand, within CSW01_00960at 179.546 kb on + strand, within CSW01_00960at 179.555 kb on + strand, within CSW01_00960at 179.563 kb on - strand, within CSW01_00960at 179.668 kb on + strand, within CSW01_00960at 179.668 kb on + strand, within CSW01_00960at 179.668 kb on + strand, within CSW01_00960at 179.668 kb on + strand, within CSW01_00960at 179.676 kb on - strand, within CSW01_00960at 179.681 kb on + strand, within CSW01_00960at 179.709 kb on - strand, within CSW01_00960at 179.739 kb on + strand, within CSW01_00960at 179.747 kb on + strand, within CSW01_00960at 179.747 kb on + strand, within CSW01_00960at 179.792 kb on + strand, within CSW01_00960at 179.796 kb on + strand, within CSW01_00960at 179.838 kb on + strand, within CSW01_00960at 179.903 kb on + strand, within CSW01_00960at 179.903 kb on + strand, within CSW01_00960at 179.911 kb on - strand, within CSW01_00960at 179.924 kb on + strand, within CSW01_00960at 179.995 kb on - strand, within CSW01_00960at 179.995 kb on - strand, within CSW01_00960at 180.025 kb on + strand, within CSW01_00960at 180.033 kb on - strand, within CSW01_00960at 180.033 kb on - strand, within CSW01_00960at 180.049 kb on + strand, within CSW01_00960at 180.070 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.075 kb on + strand, within CSW01_00960at 180.078 kb on - strand, within CSW01_00960at 180.078 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.083 kb on - strand, within CSW01_00960at 180.084 kb on - strand, within CSW01_00960

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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177,861 + -1.1
177,867 - -0.2
177,874 + +1.2
177,879 + +0.9
177,882 - -0.1
177,884 + +0.6
177,884 + +0.8
177,892 - -0.8
177,892 - +0.1
177,892 - -0.3
177,892 - -1.1
177,894 + -0.3
177,961 - CSW01_00950 0.18 -0.4
177,978 + CSW01_00950 0.21 -0.2
177,996 - CSW01_00950 0.24 +0.3
178,044 + CSW01_00950 0.32 -0.2
178,044 + CSW01_00950 0.32 +0.6
178,051 + CSW01_00950 0.34 +0.9
178,052 + CSW01_00950 0.34 +1.0
178,088 - CSW01_00950 0.40 +0.1
178,155 - CSW01_00950 0.52 -0.5
178,158 + CSW01_00950 0.52 -0.3
178,158 + CSW01_00950 0.52 +0.5
178,158 + CSW01_00950 0.52 +0.0
178,163 + CSW01_00950 0.53 -0.4
178,166 - CSW01_00950 0.54 -1.8
178,168 + CSW01_00950 0.54 +0.9
178,168 + CSW01_00950 0.54 -1.3
178,168 + CSW01_00950 0.54 +0.2
178,168 + CSW01_00950 0.54 +0.4
178,168 + CSW01_00950 0.54 -0.4
178,168 + CSW01_00950 0.54 -0.7
178,168 + CSW01_00950 0.54 +0.4
178,174 + CSW01_00950 0.55 +0.0
178,176 - CSW01_00950 0.56 -0.5
178,176 - CSW01_00950 0.56 -0.2
178,176 - CSW01_00950 0.56 +0.5
178,176 - CSW01_00950 0.56 +1.5
178,176 - CSW01_00950 0.56 -0.2
178,199 - CSW01_00950 0.60 +1.2
178,201 + CSW01_00950 0.60 +0.1
178,209 + CSW01_00950 0.62 +0.8
178,211 - CSW01_00950 0.62 -1.2
178,303 - CSW01_00950 0.78 +0.5
178,328 + CSW01_00950 0.83 -0.1
178,329 + CSW01_00950 0.83 -0.2
178,329 + CSW01_00950 0.83 -0.5
178,330 + CSW01_00950 0.83 +0.3
178,338 - CSW01_00950 0.84 +0.5
178,338 - CSW01_00950 0.84 -0.2
178,338 - CSW01_00950 0.84 -0.0
178,356 + CSW01_00950 0.88 +0.8
178,389 + -0.3
178,523 + -0.4
178,530 + -0.0
178,538 + +0.1
178,546 - +0.1
178,565 + -0.3
178,565 + -0.0
178,644 - +0.3
178,715 + +0.8
178,725 + +0.1
178,745 + -0.2
178,784 - -0.6
178,784 - -0.0
178,870 - CSW01_00955 0.11 -0.4
178,870 - CSW01_00955 0.11 -0.0
178,878 + CSW01_00955 0.14 -0.7
178,899 - CSW01_00955 0.23 +0.3
178,966 + CSW01_00955 0.50 -0.7
178,966 + CSW01_00955 0.50 -0.3
178,974 - CSW01_00955 0.53 -0.4
179,011 - CSW01_00955 0.68 -0.8
179,020 + CSW01_00955 0.71 -0.9
179,020 + CSW01_00955 0.71 -0.2
179,020 + CSW01_00955 0.71 +0.3
179,020 + CSW01_00955 0.71 -0.7
179,020 + CSW01_00955 0.71 -0.1
179,028 - CSW01_00955 0.75 -1.2
179,028 - CSW01_00955 0.75 -0.7
179,028 - CSW01_00955 0.75 -1.6
179,028 - CSW01_00955 0.75 -0.1
179,028 - CSW01_00955 0.75 -0.5
179,055 + CSW01_00955 0.86 -0.3
179,055 + CSW01_00955 0.86 -0.3
179,097 + -0.6
179,097 + -0.0
179,148 - -0.5
179,201 + +0.3
179,229 + -0.1
179,229 + +0.1
179,229 + -0.2
179,230 + -1.6
179,230 + -0.1
179,237 - -0.4
179,237 - -0.6
179,237 - +0.1
179,237 - -0.4
179,241 + +0.5
179,250 - -0.2
179,251 + -0.1
179,251 + -0.2
179,251 + +0.5
179,251 + +1.0
179,270 - -0.7
179,312 - -1.8
179,314 - -1.0
179,355 + -0.3
179,358 + -0.3
179,422 - +0.2
179,499 + CSW01_00960 0.15 -0.0
179,499 + CSW01_00960 0.15 -0.9
179,517 - CSW01_00960 0.17 +0.5
179,545 + CSW01_00960 0.19 -0.4
179,546 + CSW01_00960 0.19 -0.2
179,555 + CSW01_00960 0.20 +0.3
179,563 - CSW01_00960 0.21 +0.4
179,668 + CSW01_00960 0.31 -0.7
179,668 + CSW01_00960 0.31 -1.1
179,668 + CSW01_00960 0.31 +0.3
179,668 + CSW01_00960 0.31 +0.2
179,676 - CSW01_00960 0.32 -0.2
179,681 + CSW01_00960 0.32 +0.3
179,709 - CSW01_00960 0.35 -0.4
179,739 + CSW01_00960 0.37 -0.2
179,747 + CSW01_00960 0.38 -0.3
179,747 + CSW01_00960 0.38 +0.7
179,792 + CSW01_00960 0.42 -0.3
179,796 + CSW01_00960 0.43 -0.4
179,838 + CSW01_00960 0.47 +0.2
179,903 + CSW01_00960 0.53 -0.3
179,903 + CSW01_00960 0.53 -0.1
179,911 - CSW01_00960 0.54 -0.5
179,924 + CSW01_00960 0.55 +0.4
179,995 - CSW01_00960 0.61 -0.2
179,995 - CSW01_00960 0.61 -0.2
180,025 + CSW01_00960 0.64 -0.7
180,033 - CSW01_00960 0.65 -0.5
180,033 - CSW01_00960 0.65 -0.3
180,049 + CSW01_00960 0.66 +1.3
180,070 + CSW01_00960 0.68 -2.1
180,075 + CSW01_00960 0.69 -0.6
180,075 + CSW01_00960 0.69 -1.1
180,075 + CSW01_00960 0.69 -0.0
180,075 + CSW01_00960 0.69 +0.7
180,075 + CSW01_00960 0.69 -0.4
180,075 + CSW01_00960 0.69 +0.2
180,075 + CSW01_00960 0.69 -0.5
180,075 + CSW01_00960 0.69 -0.2
180,075 + CSW01_00960 0.69 +0.0
180,075 + CSW01_00960 0.69 -0.1
180,075 + CSW01_00960 0.69 +0.4
180,078 - CSW01_00960 0.69 -0.3
180,078 - CSW01_00960 0.69 -0.2
180,083 - CSW01_00960 0.70 +0.2
180,083 - CSW01_00960 0.70 +1.1
180,083 - CSW01_00960 0.70 -0.1
180,083 - CSW01_00960 0.70 -0.2
180,083 - CSW01_00960 0.70 -0.5
180,083 - CSW01_00960 0.70 +0.7
180,083 - CSW01_00960 0.70 +0.1
180,083 - CSW01_00960 0.70 +0.5
180,083 - CSW01_00960 0.70 +0.1
180,083 - CSW01_00960 0.70 +0.2
180,083 - CSW01_00960 0.70 +0.2
180,084 - CSW01_00960 0.70 +0.3

Or see this region's nucleotide sequence