Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27040 and BPHYT_RS27045 are separated by 132 nucleotides BPHYT_RS27045 and BPHYT_RS27050 are separated by 209 nucleotides BPHYT_RS27050 and BPHYT_RS27055 are separated by 90 nucleotides BPHYT_RS27055 and BPHYT_RS27060 are separated by 347 nucleotides
BPHYT_RS27040: BPHYT_RS27040 - permease, at 1,642,128 to 1,642,679
_RS27040
BPHYT_RS27045: BPHYT_RS27045 - hypothetical protein, at 1,642,812 to 1,643,153
_RS27045
BPHYT_RS27050: BPHYT_RS27050 - DNA topoisomerase, at 1,643,363 to 1,644,682
_RS27050
BPHYT_RS27055: BPHYT_RS27055 - hypothetical protein, at 1,644,773 to 1,645,066
_RS27055
BPHYT_RS27060: BPHYT_RS27060 - photosystem reaction center subunit H, at 1,645,414 to 1,645,911
_RS27060
Position (kb)
1643
1644
1645 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1642.462 kb on + strand, within BPHYT_RS27040 at 1642.644 kb on + strand at 1642.683 kb on + strand at 1643.675 kb on + strand, within BPHYT_RS27050 at 1644.080 kb on - strand, within BPHYT_RS27050 at 1644.116 kb on + strand, within BPHYT_RS27050 at 1644.308 kb on + strand, within BPHYT_RS27050 at 1644.787 kb on + strand at 1645.082 kb on + strand at 1645.142 kb on + strand at 1645.142 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 1,642,462 + BPHYT_RS27040 0.61 -1.5 1,642,644 + -2.8 1,642,683 + +0.8 1,643,675 + BPHYT_RS27050 0.24 +0.2 1,644,080 - BPHYT_RS27050 0.54 -1.2 1,644,116 + BPHYT_RS27050 0.57 +0.1 1,644,308 + BPHYT_RS27050 0.72 +0.8 1,644,787 + +0.8 1,645,082 + -3.2 1,645,142 + +0.4 1,645,142 + +0.2
Or see this region's nucleotide sequence