Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06680

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06670 and BPHYT_RS06675 are separated by 20 nucleotidesBPHYT_RS06675 and BPHYT_RS06680 are separated by 17 nucleotidesBPHYT_RS06680 and BPHYT_RS06685 are separated by 14 nucleotides BPHYT_RS06670: BPHYT_RS06670 - NADH:ubiquinone oxidoreductase subunit J, at 1,512,150 to 1,512,842 _RS06670 BPHYT_RS06675: BPHYT_RS06675 - NADH-quinone oxidoreductase subunit K, at 1,512,863 to 1,513,168 _RS06675 BPHYT_RS06680: BPHYT_RS06680 - NADH:ubiquinone oxidoreductase subunit L, at 1,513,186 to 1,515,273 _RS06680 BPHYT_RS06685: BPHYT_RS06685 - NADH:ubiquinone oxidoreductase subunit M, at 1,515,288 to 1,516,778 _RS06685 Position (kb) 1513 1514 1515 1516Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1512.830 kb on + strandat 1512.855 kb on + strandat 1513.166 kb on + strandat 1515.286 kb on + strandat 1516.149 kb on + strand, within BPHYT_RS06685at 1516.149 kb on + strand, within BPHYT_RS06685

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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1,512,830 + -2.4
1,512,855 + -2.1
1,513,166 + -0.1
1,515,286 + -2.4
1,516,149 + BPHYT_RS06685 0.58 -4.4
1,516,149 + BPHYT_RS06685 0.58 -2.4

Or see this region's nucleotide sequence