Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09395 and AO356_09400 overlap by 4 nucleotides AO356_09400 and AO356_09405 overlap by 4 nucleotides AO356_09405 and AO356_09410 overlap by 4 nucleotides AO356_09410 and AO356_09415 overlap by 1 nucleotides
AO356_09395: AO356_09395 - fimbrial protein, at 2,127,317 to 2,129,404
_09395
AO356_09400: AO356_09400 - pilus assembly protein PilP, at 2,129,401 to 2,129,949
_09400
AO356_09405: AO356_09405 - pilus assembly protein PilP, at 2,129,946 to 2,130,569
_09405
AO356_09410: AO356_09410 - pilus assembly protein PilN, at 2,130,566 to 2,131,132
_09410
AO356_09415: AO356_09415 - pilus assembly protein PilM, at 2,131,132 to 2,132,196
_09415
Position (kb)
2129
2130
2131 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2129.054 kb on - strand, within AO356_09395 at 2129.364 kb on - strand at 2129.549 kb on + strand, within AO356_09400 at 2129.549 kb on + strand, within AO356_09400 at 2129.549 kb on + strand, within AO356_09400 at 2129.549 kb on + strand, within AO356_09400 at 2129.549 kb on + strand, within AO356_09400 at 2129.550 kb on - strand, within AO356_09400 at 2129.550 kb on - strand, within AO356_09400 at 2129.550 kb on - strand, within AO356_09400 at 2129.550 kb on - strand, within AO356_09400 at 2129.626 kb on - strand, within AO356_09400 at 2129.667 kb on - strand, within AO356_09400 at 2129.777 kb on + strand, within AO356_09400 at 2129.777 kb on + strand, within AO356_09400 at 2129.777 kb on + strand, within AO356_09400 at 2129.778 kb on - strand, within AO356_09400 at 2129.778 kb on - strand, within AO356_09400 at 2129.778 kb on - strand, within AO356_09400 at 2129.778 kb on - strand, within AO356_09400 at 2129.778 kb on - strand, within AO356_09400 at 2129.778 kb on - strand, within AO356_09400 at 2129.778 kb on - strand, within AO356_09400 at 2129.781 kb on + strand, within AO356_09400 at 2129.781 kb on + strand, within AO356_09400 at 2129.781 kb on + strand, within AO356_09400 at 2129.781 kb on + strand, within AO356_09400 at 2129.782 kb on - strand, within AO356_09400 at 2129.782 kb on - strand, within AO356_09400 at 2129.782 kb on - strand, within AO356_09400 at 2129.782 kb on - strand, within AO356_09400 at 2129.792 kb on + strand, within AO356_09400 at 2129.855 kb on + strand, within AO356_09400 at 2129.855 kb on + strand, within AO356_09400 at 2129.855 kb on + strand, within AO356_09400 at 2129.855 kb on + strand, within AO356_09400 at 2129.855 kb on + strand, within AO356_09400 at 2129.856 kb on - strand, within AO356_09400 at 2129.856 kb on - strand, within AO356_09400 at 2129.856 kb on - strand, within AO356_09400 at 2129.856 kb on - strand, within AO356_09400 at 2129.856 kb on - strand, within AO356_09400 at 2129.856 kb on - strand, within AO356_09400 at 2129.971 kb on + strand at 2129.971 kb on + strand at 2129.971 kb on + strand at 2129.971 kb on + strand at 2129.971 kb on + strand at 2129.977 kb on + strand at 2129.978 kb on - strand at 2129.978 kb on - strand at 2129.978 kb on - strand at 2130.148 kb on + strand, within AO356_09405 at 2130.149 kb on - strand, within AO356_09405 at 2130.149 kb on - strand, within AO356_09405 at 2130.149 kb on - strand, within AO356_09405 at 2130.149 kb on - strand, within AO356_09405 at 2130.276 kb on + strand, within AO356_09405 at 2130.276 kb on + strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.277 kb on - strand, within AO356_09405 at 2130.316 kb on + strand, within AO356_09405 at 2130.316 kb on + strand, within AO356_09405 at 2130.317 kb on - strand, within AO356_09405 at 2130.317 kb on - strand, within AO356_09405 at 2130.372 kb on - strand, within AO356_09405 at 2130.428 kb on + strand, within AO356_09405 at 2130.428 kb on + strand, within AO356_09405 at 2130.429 kb on - strand, within AO356_09405 at 2130.429 kb on - strand, within AO356_09405 at 2130.429 kb on - strand, within AO356_09405 at 2130.430 kb on + strand, within AO356_09405 at 2130.431 kb on - strand, within AO356_09405 at 2130.792 kb on + strand, within AO356_09410 at 2130.792 kb on + strand, within AO356_09410 at 2130.792 kb on + strand, within AO356_09410 at 2130.792 kb on + strand, within AO356_09410 at 2130.792 kb on + strand, within AO356_09410 at 2130.792 kb on + strand, within AO356_09410 at 2130.793 kb on - strand, within AO356_09410 at 2130.793 kb on - strand, within AO356_09410 at 2130.793 kb on - strand, within AO356_09410 at 2130.793 kb on - strand, within AO356_09410 at 2130.793 kb on - strand, within AO356_09410 at 2130.970 kb on + strand, within AO356_09410 at 2130.970 kb on + strand, within AO356_09410 at 2130.971 kb on - strand, within AO356_09410 at 2131.008 kb on + strand, within AO356_09410 at 2131.009 kb on - strand, within AO356_09410 at 2131.009 kb on - strand, within AO356_09410 at 2131.009 kb on - strand, within AO356_09410 at 2131.233 kb on + strand at 2131.344 kb on - strand, within AO356_09415 at 2131.431 kb on - strand, within AO356_09415 at 2131.431 kb on - strand, within AO356_09415 at 2131.431 kb on - strand, within AO356_09415 at 2131.545 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.547 kb on + strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415 at 2131.548 kb on - strand, within AO356_09415
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,129,054 - AO356_09395 0.83 +1.0 2,129,364 - -0.1 2,129,549 + AO356_09400 0.27 +0.5 2,129,549 + AO356_09400 0.27 -0.3 2,129,549 + AO356_09400 0.27 -0.2 2,129,549 + AO356_09400 0.27 +1.0 2,129,549 + AO356_09400 0.27 +0.6 2,129,550 - AO356_09400 0.27 -0.2 2,129,550 - AO356_09400 0.27 -0.8 2,129,550 - AO356_09400 0.27 +0.3 2,129,550 - AO356_09400 0.27 +0.2 2,129,626 - AO356_09400 0.41 +1.2 2,129,667 - AO356_09400 0.48 +0.1 2,129,777 + AO356_09400 0.68 -0.1 2,129,777 + AO356_09400 0.68 +1.2 2,129,777 + AO356_09400 0.68 -0.3 2,129,778 - AO356_09400 0.69 +0.4 2,129,778 - AO356_09400 0.69 +0.5 2,129,778 - AO356_09400 0.69 +0.4 2,129,778 - AO356_09400 0.69 +0.5 2,129,778 - AO356_09400 0.69 -0.6 2,129,778 - AO356_09400 0.69 +1.6 2,129,778 - AO356_09400 0.69 -0.1 2,129,781 + AO356_09400 0.69 +0.1 2,129,781 + AO356_09400 0.69 +1.0 2,129,781 + AO356_09400 0.69 +0.9 2,129,781 + AO356_09400 0.69 +0.6 2,129,782 - AO356_09400 0.69 +0.5 2,129,782 - AO356_09400 0.69 -0.2 2,129,782 - AO356_09400 0.69 +0.0 2,129,782 - AO356_09400 0.69 +0.6 2,129,792 + AO356_09400 0.71 -1.1 2,129,855 + AO356_09400 0.83 -0.4 2,129,855 + AO356_09400 0.83 +0.7 2,129,855 + AO356_09400 0.83 -0.0 2,129,855 + AO356_09400 0.83 +0.2 2,129,855 + AO356_09400 0.83 -0.3 2,129,856 - AO356_09400 0.83 +0.0 2,129,856 - AO356_09400 0.83 +0.5 2,129,856 - AO356_09400 0.83 -0.1 2,129,856 - AO356_09400 0.83 +0.5 2,129,856 - AO356_09400 0.83 +0.1 2,129,856 - AO356_09400 0.83 -0.1 2,129,971 + -0.3 2,129,971 + -0.2 2,129,971 + +0.7 2,129,971 + +2.0 2,129,971 + -0.9 2,129,977 + +0.4 2,129,978 - -0.1 2,129,978 - +0.7 2,129,978 - +0.1 2,130,148 + AO356_09405 0.32 -0.2 2,130,149 - AO356_09405 0.33 +2.6 2,130,149 - AO356_09405 0.33 +0.1 2,130,149 - AO356_09405 0.33 -0.7 2,130,149 - AO356_09405 0.33 +0.4 2,130,276 + AO356_09405 0.53 -0.2 2,130,276 + AO356_09405 0.53 -0.6 2,130,277 - AO356_09405 0.53 -0.5 2,130,277 - AO356_09405 0.53 +1.8 2,130,277 - AO356_09405 0.53 +0.8 2,130,277 - AO356_09405 0.53 +0.9 2,130,277 - AO356_09405 0.53 +0.7 2,130,277 - AO356_09405 0.53 +0.6 2,130,277 - AO356_09405 0.53 +0.5 2,130,277 - AO356_09405 0.53 +0.6 2,130,277 - AO356_09405 0.53 +0.4 2,130,277 - AO356_09405 0.53 +0.0 2,130,316 + AO356_09405 0.59 +0.3 2,130,316 + AO356_09405 0.59 +0.1 2,130,317 - AO356_09405 0.59 -0.2 2,130,317 - AO356_09405 0.59 +0.2 2,130,372 - AO356_09405 0.68 -0.2 2,130,428 + AO356_09405 0.77 -0.8 2,130,428 + AO356_09405 0.77 -0.6 2,130,429 - AO356_09405 0.77 -1.0 2,130,429 - AO356_09405 0.77 -0.8 2,130,429 - AO356_09405 0.77 +1.1 2,130,430 + AO356_09405 0.78 +0.2 2,130,431 - AO356_09405 0.78 +0.5 2,130,792 + AO356_09410 0.40 +0.6 2,130,792 + AO356_09410 0.40 +1.1 2,130,792 + AO356_09410 0.40 +0.4 2,130,792 + AO356_09410 0.40 +2.0 2,130,792 + AO356_09410 0.40 -0.3 2,130,792 + AO356_09410 0.40 +0.5 2,130,793 - AO356_09410 0.40 +0.2 2,130,793 - AO356_09410 0.40 +1.4 2,130,793 - AO356_09410 0.40 +0.6 2,130,793 - AO356_09410 0.40 -0.1 2,130,793 - AO356_09410 0.40 -0.3 2,130,970 + AO356_09410 0.71 -1.2 2,130,970 + AO356_09410 0.71 +1.0 2,130,971 - AO356_09410 0.71 +0.3 2,131,008 + AO356_09410 0.78 +0.5 2,131,009 - AO356_09410 0.78 +0.2 2,131,009 - AO356_09410 0.78 +0.1 2,131,009 - AO356_09410 0.78 +0.8 2,131,233 + +0.0 2,131,344 - AO356_09415 0.20 -1.0 2,131,431 - AO356_09415 0.28 +0.1 2,131,431 - AO356_09415 0.28 +0.0 2,131,431 - AO356_09415 0.28 -0.0 2,131,545 + AO356_09415 0.39 +0.1 2,131,547 + AO356_09415 0.39 +0.0 2,131,547 + AO356_09415 0.39 +0.5 2,131,547 + AO356_09415 0.39 -0.6 2,131,547 + AO356_09415 0.39 -0.1 2,131,547 + AO356_09415 0.39 +0.3 2,131,547 + AO356_09415 0.39 +1.6 2,131,547 + AO356_09415 0.39 -0.3 2,131,547 + AO356_09415 0.39 +0.2 2,131,547 + AO356_09415 0.39 +0.7 2,131,547 + AO356_09415 0.39 -0.6 2,131,547 + AO356_09415 0.39 -0.0 2,131,547 + AO356_09415 0.39 +0.2 2,131,548 - AO356_09415 0.39 -1.8 2,131,548 - AO356_09415 0.39 +2.0 2,131,548 - AO356_09415 0.39 -0.4 2,131,548 - AO356_09415 0.39 -0.3 2,131,548 - AO356_09415 0.39 -0.4 2,131,548 - AO356_09415 0.39 +0.5 2,131,548 - AO356_09415 0.39 -0.6 2,131,548 - AO356_09415 0.39 -0.2 2,131,548 - AO356_09415 0.39 -0.5 2,131,548 - AO356_09415 0.39 +0.2
Or see this region's nucleotide sequence