Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09395

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09385 and AO356_09390 are separated by 179 nucleotidesAO356_09390 and AO356_09395 are separated by 4 nucleotidesAO356_09395 and AO356_09400 overlap by 4 nucleotidesAO356_09400 and AO356_09405 overlap by 4 nucleotides AO356_09385: AO356_09385 - 3-dehydroquinate synthase, at 2,125,514 to 2,126,614 _09385 AO356_09390: AO356_09390 - shikimate kinase, at 2,126,794 to 2,127,312 _09390 AO356_09395: AO356_09395 - fimbrial protein, at 2,127,317 to 2,129,404 _09395 AO356_09400: AO356_09400 - pilus assembly protein PilP, at 2,129,401 to 2,129,949 _09400 AO356_09405: AO356_09405 - pilus assembly protein PilP, at 2,129,946 to 2,130,569 _09405 Position (kb) 2127 2128 2129 2130Strain fitness (log2 ratio) -1 0 1 2at 2126.659 kb on - strandat 2126.681 kb on - strandat 2126.681 kb on - strandat 2126.681 kb on - strandat 2126.681 kb on - strandat 2127.426 kb on + strandat 2127.427 kb on - strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.458 kb on + strandat 2127.458 kb on + strandat 2127.458 kb on + strandat 2127.458 kb on + strandat 2127.459 kb on - strandat 2127.459 kb on - strandat 2127.459 kb on - strandat 2127.475 kb on + strandat 2127.717 kb on + strand, within AO356_09395at 2127.877 kb on + strand, within AO356_09395at 2127.877 kb on + strand, within AO356_09395at 2127.878 kb on - strand, within AO356_09395at 2127.878 kb on - strand, within AO356_09395at 2127.923 kb on - strand, within AO356_09395at 2128.032 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.254 kb on + strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395at 2128.255 kb on - strand, within AO356_09395at 2128.660 kb on - strand, within AO356_09395at 2128.660 kb on - strand, within AO356_09395at 2128.669 kb on - strand, within AO356_09395at 2128.942 kb on + strand, within AO356_09395at 2129.054 kb on - strand, within AO356_09395at 2129.364 kb on - strandat 2129.549 kb on + strand, within AO356_09400at 2129.549 kb on + strand, within AO356_09400at 2129.549 kb on + strand, within AO356_09400at 2129.549 kb on + strand, within AO356_09400at 2129.549 kb on + strand, within AO356_09400at 2129.550 kb on - strand, within AO356_09400at 2129.550 kb on - strand, within AO356_09400at 2129.550 kb on - strand, within AO356_09400at 2129.550 kb on - strand, within AO356_09400at 2129.626 kb on - strand, within AO356_09400at 2129.667 kb on - strand, within AO356_09400at 2129.777 kb on + strand, within AO356_09400at 2129.777 kb on + strand, within AO356_09400at 2129.777 kb on + strand, within AO356_09400at 2129.778 kb on - strand, within AO356_09400at 2129.778 kb on - strand, within AO356_09400at 2129.778 kb on - strand, within AO356_09400at 2129.778 kb on - strand, within AO356_09400at 2129.778 kb on - strand, within AO356_09400at 2129.778 kb on - strand, within AO356_09400at 2129.778 kb on - strand, within AO356_09400at 2129.781 kb on + strand, within AO356_09400at 2129.781 kb on + strand, within AO356_09400at 2129.781 kb on + strand, within AO356_09400at 2129.781 kb on + strand, within AO356_09400at 2129.782 kb on - strand, within AO356_09400at 2129.782 kb on - strand, within AO356_09400at 2129.782 kb on - strand, within AO356_09400at 2129.782 kb on - strand, within AO356_09400at 2129.792 kb on + strand, within AO356_09400at 2129.855 kb on + strand, within AO356_09400at 2129.855 kb on + strand, within AO356_09400at 2129.855 kb on + strand, within AO356_09400at 2129.855 kb on + strand, within AO356_09400at 2129.855 kb on + strand, within AO356_09400at 2129.856 kb on - strand, within AO356_09400at 2129.856 kb on - strand, within AO356_09400at 2129.856 kb on - strand, within AO356_09400at 2129.856 kb on - strand, within AO356_09400at 2129.856 kb on - strand, within AO356_09400at 2129.856 kb on - strand, within AO356_09400at 2129.971 kb on + strandat 2129.971 kb on + strandat 2129.971 kb on + strandat 2129.971 kb on + strandat 2129.971 kb on + strandat 2129.977 kb on + strandat 2129.978 kb on - strandat 2129.978 kb on - strandat 2129.978 kb on - strandat 2130.148 kb on + strand, within AO356_09405at 2130.149 kb on - strand, within AO356_09405at 2130.149 kb on - strand, within AO356_09405at 2130.149 kb on - strand, within AO356_09405at 2130.149 kb on - strand, within AO356_09405at 2130.276 kb on + strand, within AO356_09405at 2130.276 kb on + strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.277 kb on - strand, within AO356_09405at 2130.316 kb on + strand, within AO356_09405at 2130.316 kb on + strand, within AO356_09405at 2130.317 kb on - strand, within AO356_09405at 2130.317 kb on - strand, within AO356_09405at 2130.372 kb on - strand, within AO356_09405

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,126,659 - +1.9
2,126,681 - +0.9
2,126,681 - +0.7
2,126,681 - +0.6
2,126,681 - +0.9
2,127,426 + +0.4
2,127,427 - +0.2
2,127,454 + +0.2
2,127,454 + -0.5
2,127,454 + -0.1
2,127,454 + +0.1
2,127,454 + -0.6
2,127,454 + -0.9
2,127,454 + +0.2
2,127,455 - -0.1
2,127,455 - +0.4
2,127,455 - -0.4
2,127,455 - +0.2
2,127,455 - +0.3
2,127,455 - +0.0
2,127,455 - +0.9
2,127,455 - +0.4
2,127,455 - +0.6
2,127,455 - +0.5
2,127,455 - +0.4
2,127,455 - -0.3
2,127,458 + +0.2
2,127,458 + -0.6
2,127,458 + -0.3
2,127,458 + -1.0
2,127,459 - +1.0
2,127,459 - +0.1
2,127,459 - -0.6
2,127,475 + -1.0
2,127,717 + AO356_09395 0.19 +1.3
2,127,877 + AO356_09395 0.27 -0.6
2,127,877 + AO356_09395 0.27 +0.2
2,127,878 - AO356_09395 0.27 +0.6
2,127,878 - AO356_09395 0.27 +0.0
2,127,923 - AO356_09395 0.29 -0.4
2,128,032 + AO356_09395 0.34 -0.3
2,128,254 + AO356_09395 0.45 -0.2
2,128,254 + AO356_09395 0.45 +0.1
2,128,254 + AO356_09395 0.45 -0.6
2,128,254 + AO356_09395 0.45 +0.4
2,128,254 + AO356_09395 0.45 -0.5
2,128,254 + AO356_09395 0.45 -0.4
2,128,254 + AO356_09395 0.45 +0.1
2,128,254 + AO356_09395 0.45 -0.1
2,128,254 + AO356_09395 0.45 +0.4
2,128,254 + AO356_09395 0.45 -0.1
2,128,255 - AO356_09395 0.45 +0.2
2,128,255 - AO356_09395 0.45 +0.5
2,128,255 - AO356_09395 0.45 -0.9
2,128,255 - AO356_09395 0.45 +0.7
2,128,255 - AO356_09395 0.45 -0.3
2,128,660 - AO356_09395 0.64 +0.1
2,128,660 - AO356_09395 0.64 -0.3
2,128,669 - AO356_09395 0.65 +0.4
2,128,942 + AO356_09395 0.78 -0.5
2,129,054 - AO356_09395 0.83 +1.0
2,129,364 - -0.1
2,129,549 + AO356_09400 0.27 +0.5
2,129,549 + AO356_09400 0.27 -0.3
2,129,549 + AO356_09400 0.27 -0.2
2,129,549 + AO356_09400 0.27 +1.0
2,129,549 + AO356_09400 0.27 +0.6
2,129,550 - AO356_09400 0.27 -0.2
2,129,550 - AO356_09400 0.27 -0.8
2,129,550 - AO356_09400 0.27 +0.3
2,129,550 - AO356_09400 0.27 +0.2
2,129,626 - AO356_09400 0.41 +1.2
2,129,667 - AO356_09400 0.48 +0.1
2,129,777 + AO356_09400 0.68 -0.1
2,129,777 + AO356_09400 0.68 +1.2
2,129,777 + AO356_09400 0.68 -0.3
2,129,778 - AO356_09400 0.69 +0.4
2,129,778 - AO356_09400 0.69 +0.5
2,129,778 - AO356_09400 0.69 +0.4
2,129,778 - AO356_09400 0.69 +0.5
2,129,778 - AO356_09400 0.69 -0.6
2,129,778 - AO356_09400 0.69 +1.6
2,129,778 - AO356_09400 0.69 -0.1
2,129,781 + AO356_09400 0.69 +0.1
2,129,781 + AO356_09400 0.69 +1.0
2,129,781 + AO356_09400 0.69 +0.9
2,129,781 + AO356_09400 0.69 +0.6
2,129,782 - AO356_09400 0.69 +0.5
2,129,782 - AO356_09400 0.69 -0.2
2,129,782 - AO356_09400 0.69 +0.0
2,129,782 - AO356_09400 0.69 +0.6
2,129,792 + AO356_09400 0.71 -1.1
2,129,855 + AO356_09400 0.83 -0.4
2,129,855 + AO356_09400 0.83 +0.7
2,129,855 + AO356_09400 0.83 -0.0
2,129,855 + AO356_09400 0.83 +0.2
2,129,855 + AO356_09400 0.83 -0.3
2,129,856 - AO356_09400 0.83 +0.0
2,129,856 - AO356_09400 0.83 +0.5
2,129,856 - AO356_09400 0.83 -0.1
2,129,856 - AO356_09400 0.83 +0.5
2,129,856 - AO356_09400 0.83 +0.1
2,129,856 - AO356_09400 0.83 -0.1
2,129,971 + -0.3
2,129,971 + -0.2
2,129,971 + +0.7
2,129,971 + +2.0
2,129,971 + -0.9
2,129,977 + +0.4
2,129,978 - -0.1
2,129,978 - +0.7
2,129,978 - +0.1
2,130,148 + AO356_09405 0.32 -0.2
2,130,149 - AO356_09405 0.33 +2.6
2,130,149 - AO356_09405 0.33 +0.1
2,130,149 - AO356_09405 0.33 -0.7
2,130,149 - AO356_09405 0.33 +0.4
2,130,276 + AO356_09405 0.53 -0.2
2,130,276 + AO356_09405 0.53 -0.6
2,130,277 - AO356_09405 0.53 -0.5
2,130,277 - AO356_09405 0.53 +1.8
2,130,277 - AO356_09405 0.53 +0.8
2,130,277 - AO356_09405 0.53 +0.9
2,130,277 - AO356_09405 0.53 +0.7
2,130,277 - AO356_09405 0.53 +0.6
2,130,277 - AO356_09405 0.53 +0.5
2,130,277 - AO356_09405 0.53 +0.6
2,130,277 - AO356_09405 0.53 +0.4
2,130,277 - AO356_09405 0.53 +0.0
2,130,316 + AO356_09405 0.59 +0.3
2,130,316 + AO356_09405 0.59 +0.1
2,130,317 - AO356_09405 0.59 -0.2
2,130,317 - AO356_09405 0.59 +0.2
2,130,372 - AO356_09405 0.68 -0.2

Or see this region's nucleotide sequence