Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00480 and AO356_00485 are separated by 392 nucleotides AO356_00485 and AO356_00490 are separated by 55 nucleotides
AO356_00480: AO356_00480 - ABC transporter for D-Glucosamine, periplasmic substrate-binding component <small>(from data)</small>, at 98,815 to 99,663
_00480
AO356_00485: AO356_00485 - hypothetical protein, at 100,056 to 100,397
_00485
AO356_00490: AO356_00490 - phospholipase, at 100,453 to 102,099
_00490
Position (kb) 100
101 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 99.107 kb on + strand, within AO356_00480 at 99.107 kb on + strand, within AO356_00480 at 99.179 kb on + strand, within AO356_00480 at 99.179 kb on + strand, within AO356_00480 at 99.245 kb on + strand, within AO356_00480 at 99.245 kb on + strand, within AO356_00480 at 99.245 kb on + strand, within AO356_00480 at 99.246 kb on - strand, within AO356_00480 at 99.291 kb on - strand, within AO356_00480 at 99.522 kb on + strand, within AO356_00480 at 99.713 kb on + strand at 99.933 kb on + strand at 99.935 kb on + strand at 99.936 kb on - strand at 99.936 kb on - strand at 99.936 kb on - strand at 99.936 kb on - strand at 99.936 kb on - strand at 99.936 kb on - strand at 99.978 kb on + strand at 99.978 kb on + strand at 99.978 kb on + strand at 100.057 kb on + strand at 100.057 kb on + strand at 100.069 kb on + strand at 100.069 kb on + strand at 100.069 kb on + strand at 100.070 kb on - strand at 100.070 kb on - strand at 100.070 kb on - strand at 100.099 kb on + strand, within AO356_00485 at 100.099 kb on + strand, within AO356_00485 at 100.099 kb on + strand, within AO356_00485 at 100.099 kb on + strand, within AO356_00485 at 100.100 kb on - strand, within AO356_00485 at 100.100 kb on - strand, within AO356_00485 at 100.100 kb on - strand, within AO356_00485 at 100.126 kb on + strand, within AO356_00485 at 100.126 kb on + strand, within AO356_00485 at 100.127 kb on - strand, within AO356_00485 at 100.281 kb on - strand, within AO356_00485 at 100.388 kb on - strand at 100.415 kb on + strand at 100.508 kb on + strand at 100.508 kb on + strand at 100.508 kb on + strand at 100.508 kb on + strand at 100.509 kb on - strand at 100.509 kb on - strand at 100.578 kb on - strand at 100.598 kb on + strand at 100.661 kb on + strand, within AO356_00490 at 100.661 kb on + strand, within AO356_00490 at 100.662 kb on - strand, within AO356_00490 at 100.771 kb on + strand, within AO356_00490 at 100.771 kb on + strand, within AO356_00490 at 100.772 kb on - strand, within AO356_00490 at 100.772 kb on - strand, within AO356_00490 at 100.772 kb on - strand, within AO356_00490 at 101.168 kb on + strand, within AO356_00490 at 101.169 kb on - strand, within AO356_00490 at 101.169 kb on - strand, within AO356_00490
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 99,107 + AO356_00480 0.34 -2.6 99,107 + AO356_00480 0.34 -3.6 99,179 + AO356_00480 0.43 -2.3 99,179 + AO356_00480 0.43 -2.1 99,245 + AO356_00480 0.51 -0.3 99,245 + AO356_00480 0.51 -3.4 99,245 + AO356_00480 0.51 -1.8 99,246 - AO356_00480 0.51 -4.1 99,291 - AO356_00480 0.56 -1.3 99,522 + AO356_00480 0.83 -3.1 99,713 + -3.8 99,933 + -0.2 99,935 + -1.1 99,936 - -1.9 99,936 - -1.9 99,936 - -2.3 99,936 - -2.7 99,936 - -2.1 99,936 - -1.6 99,978 + -0.7 99,978 + -0.7 99,978 + -1.9 100,057 + -1.6 100,057 + -1.3 100,069 + -0.1 100,069 + -0.1 100,069 + +0.7 100,070 - -0.7 100,070 - -1.4 100,070 - -0.3 100,099 + AO356_00485 0.13 -0.7 100,099 + AO356_00485 0.13 -1.4 100,099 + AO356_00485 0.13 -0.7 100,099 + AO356_00485 0.13 -0.7 100,100 - AO356_00485 0.13 -0.9 100,100 - AO356_00485 0.13 -0.9 100,100 - AO356_00485 0.13 -0.4 100,126 + AO356_00485 0.20 -0.8 100,126 + AO356_00485 0.20 -1.1 100,127 - AO356_00485 0.21 -0.5 100,281 - AO356_00485 0.66 -1.2 100,388 - +0.0 100,415 + -0.2 100,508 + -0.9 100,508 + -0.5 100,508 + -0.2 100,508 + -0.8 100,509 - -1.1 100,509 - -0.8 100,578 - -0.8 100,598 + -0.1 100,661 + AO356_00490 0.13 -0.5 100,661 + AO356_00490 0.13 -0.5 100,662 - AO356_00490 0.13 -1.5 100,771 + AO356_00490 0.19 -1.3 100,771 + AO356_00490 0.19 +0.9 100,772 - AO356_00490 0.19 +0.9 100,772 - AO356_00490 0.19 +1.0 100,772 - AO356_00490 0.19 +0.5 101,168 + AO356_00490 0.43 +0.8 101,169 - AO356_00490 0.43 +0.4 101,169 - AO356_00490 0.43 -1.3
Or see this region's nucleotide sequence