Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00470

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00460 and AO356_00465 are separated by 25 nucleotidesAO356_00465 and AO356_00470 overlap by 4 nucleotidesAO356_00470 and AO356_00475 are separated by 9 nucleotidesAO356_00475 and AO356_00480 are separated by 54 nucleotides AO356_00460: AO356_00460 - reactive intermediate/imine deaminase, at 96,223 to 96,612 _00460 AO356_00465: AO356_00465 - ABC transporter for D-Glucosamine, putative ATPase component (from data), at 96,638 to 97,429 _00465 AO356_00470: AO356_00470 - ABC transporter for D-Glucosamine, permease component 1 (from data), at 97,426 to 98,088 _00470 AO356_00475: AO356_00475 - ABC transporter for D-Glucosamine, permease component 2 (from data), at 98,098 to 98,760 _00475 AO356_00480: AO356_00480 - ABC transporter for D-Glucosamine, periplasmic substrate-binding component (from data), at 98,815 to 99,663 _00480 Position (kb) 97 98 99Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 97.195 kb on - strand, within AO356_00465at 97.420 kb on + strandat 97.420 kb on + strandat 97.421 kb on - strandat 97.421 kb on - strandat 97.478 kb on + strandat 97.478 kb on + strandat 97.479 kb on - strandat 97.479 kb on - strandat 97.479 kb on - strandat 97.479 kb on - strandat 97.479 kb on - strandat 97.514 kb on + strand, within AO356_00470at 97.515 kb on - strand, within AO356_00470at 97.676 kb on + strand, within AO356_00470at 97.691 kb on + strand, within AO356_00470at 97.691 kb on + strand, within AO356_00470at 97.692 kb on - strand, within AO356_00470at 97.853 kb on + strand, within AO356_00470at 97.853 kb on + strand, within AO356_00470at 97.853 kb on + strand, within AO356_00470at 97.853 kb on + strand, within AO356_00470at 97.854 kb on - strand, within AO356_00470at 97.908 kb on - strand, within AO356_00470at 97.943 kb on + strand, within AO356_00470at 97.943 kb on + strand, within AO356_00470at 97.943 kb on + strand, within AO356_00470at 97.944 kb on - strand, within AO356_00470at 97.944 kb on - strand, within AO356_00470at 98.056 kb on + strandat 98.057 kb on - strandat 98.057 kb on - strandat 98.084 kb on + strandat 98.084 kb on + strandat 98.084 kb on + strandat 98.084 kb on + strandat 98.085 kb on - strandat 98.085 kb on - strandat 98.153 kb on + strandat 98.169 kb on - strand, within AO356_00475at 98.169 kb on - strand, within AO356_00475at 98.207 kb on + strand, within AO356_00475at 98.234 kb on + strand, within AO356_00475at 98.234 kb on + strand, within AO356_00475at 98.235 kb on - strand, within AO356_00475at 98.237 kb on + strand, within AO356_00475at 98.237 kb on + strand, within AO356_00475at 98.238 kb on - strand, within AO356_00475at 98.238 kb on - strand, within AO356_00475at 98.351 kb on + strand, within AO356_00475at 98.462 kb on + strand, within AO356_00475at 98.531 kb on + strand, within AO356_00475at 98.563 kb on - strand, within AO356_00475at 98.563 kb on - strand, within AO356_00475at 98.563 kb on - strand, within AO356_00475at 98.582 kb on + strand, within AO356_00475at 98.583 kb on - strand, within AO356_00475at 98.583 kb on - strand, within AO356_00475at 98.583 kb on - strand, within AO356_00475at 98.583 kb on - strand, within AO356_00475at 98.753 kb on + strandat 98.753 kb on + strandat 98.754 kb on - strandat 98.754 kb on - strandat 98.891 kb on + strandat 98.892 kb on - strandat 98.984 kb on + strand, within AO356_00480at 98.985 kb on - strand, within AO356_00480at 98.985 kb on - strand, within AO356_00480at 99.005 kb on + strand, within AO356_00480at 99.006 kb on - strand, within AO356_00480at 99.047 kb on + strand, within AO356_00480at 99.048 kb on - strand, within AO356_00480at 99.048 kb on - strand, within AO356_00480

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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97,195 - AO356_00465 0.70 -2.1
97,420 + -2.9
97,420 + -0.3
97,421 - -2.8
97,421 - -3.1
97,478 + -2.8
97,478 + -2.4
97,479 - -2.2
97,479 - -1.8
97,479 - -3.1
97,479 - -2.7
97,479 - -3.1
97,514 + AO356_00470 0.13 -3.3
97,515 - AO356_00470 0.13 -3.1
97,676 + AO356_00470 0.38 -3.4
97,691 + AO356_00470 0.40 -1.9
97,691 + AO356_00470 0.40 -1.9
97,692 - AO356_00470 0.40 -3.3
97,853 + AO356_00470 0.64 -0.7
97,853 + AO356_00470 0.64 -0.2
97,853 + AO356_00470 0.64 -3.5
97,853 + AO356_00470 0.64 -3.0
97,854 - AO356_00470 0.65 -2.6
97,908 - AO356_00470 0.73 -0.1
97,943 + AO356_00470 0.78 -3.3
97,943 + AO356_00470 0.78 -3.1
97,943 + AO356_00470 0.78 -3.2
97,944 - AO356_00470 0.78 +0.1
97,944 - AO356_00470 0.78 -2.8
98,056 + -3.1
98,057 - -2.5
98,057 - -4.0
98,084 + -3.3
98,084 + -3.5
98,084 + -2.3
98,084 + -3.1
98,085 - -3.3
98,085 - -1.9
98,153 + -1.5
98,169 - AO356_00475 0.11 -3.4
98,169 - AO356_00475 0.11 -3.1
98,207 + AO356_00475 0.16 -3.8
98,234 + AO356_00475 0.21 -3.7
98,234 + AO356_00475 0.21 -2.1
98,235 - AO356_00475 0.21 -3.5
98,237 + AO356_00475 0.21 -1.3
98,237 + AO356_00475 0.21 -3.1
98,238 - AO356_00475 0.21 -3.1
98,238 - AO356_00475 0.21 -3.5
98,351 + AO356_00475 0.38 -3.6
98,462 + AO356_00475 0.55 -3.3
98,531 + AO356_00475 0.65 -2.3
98,563 - AO356_00475 0.70 -1.7
98,563 - AO356_00475 0.70 -1.9
98,563 - AO356_00475 0.70 -2.3
98,582 + AO356_00475 0.73 -1.5
98,583 - AO356_00475 0.73 -0.7
98,583 - AO356_00475 0.73 -2.4
98,583 - AO356_00475 0.73 -1.8
98,583 - AO356_00475 0.73 -1.9
98,753 + -2.1
98,753 + -2.4
98,754 - -3.3
98,754 - -3.6
98,891 + -2.1
98,892 - -0.5
98,984 + AO356_00480 0.20 -2.3
98,985 - AO356_00480 0.20 -3.3
98,985 - AO356_00480 0.20 -2.6
99,005 + AO356_00480 0.22 -2.6
99,006 - AO356_00480 0.22 -3.4
99,047 + AO356_00480 0.27 -2.3
99,048 - AO356_00480 0.27 -4.5
99,048 - AO356_00480 0.27 -4.2

Or see this region's nucleotide sequence