Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2865 and Dshi_2866 are separated by 16 nucleotides Dshi_2866 and Dshi_2867 are separated by 11 nucleotides Dshi_2867 and Dshi_2868 are separated by 299 nucleotides Dshi_2868 and Dshi_2869 are separated by 9 nucleotides
Dshi_2865: Dshi_2865 - succinate dehydrogenase, flavoprotein subunit (RefSeq), at 3,021,696 to 3,023,498
_2865
Dshi_2866: Dshi_2866 - Succinate dehydrogenase hydrophobic membrane anchor (RefSeq), at 3,023,515 to 3,023,886
_2866
Dshi_2867: Dshi_2867 - Succinate dehydrogenase cytochrome b556 subunit (RefSeq), at 3,023,898 to 3,024,281
_2867
Dshi_2868: Dshi_2868 - cytochrome c class II (RefSeq), at 3,024,581 to 3,025,060
_2868
Dshi_2869: Dshi_2869 - Gluconate 2-dehydrogenase (acceptor) (RefSeq), at 3,025,070 to 3,025,948
_2869
Position (kb)
3023
3024
3025 Strain fitness (log2 ratio)
-1
0
1 at 3024.467 kb on - strand at 3024.608 kb on + strand at 3024.659 kb on + strand, within Dshi_2868 at 3024.659 kb on + strand, within Dshi_2868 at 3024.729 kb on - strand, within Dshi_2868 at 3024.745 kb on + strand, within Dshi_2868 at 3024.993 kb on - strand, within Dshi_2868 at 3024.996 kb on + strand, within Dshi_2868 at 3025.006 kb on + strand, within Dshi_2868 at 3025.099 kb on + strand at 3025.149 kb on - strand at 3025.215 kb on - strand, within Dshi_2869 at 3025.270 kb on + strand, within Dshi_2869
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 3,024,467 - -0.2 3,024,608 + +0.1 3,024,659 + Dshi_2868 0.16 -0.6 3,024,659 + Dshi_2868 0.16 -0.3 3,024,729 - Dshi_2868 0.31 -0.4 3,024,745 + Dshi_2868 0.34 -0.7 3,024,993 - Dshi_2868 0.86 -0.5 3,024,996 + Dshi_2868 0.86 +0.5 3,025,006 + Dshi_2868 0.89 +0.3 3,025,099 + +0.7 3,025,149 - -0.0 3,025,215 - Dshi_2869 0.16 -0.3 3,025,270 + Dshi_2869 0.23 -0.3
Or see this region's nucleotide sequence