Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2836 and Dshi_2837 are separated by 505 nucleotides Dshi_2837 and Dshi_2838 are separated by 79 nucleotides Dshi_2838 and Dshi_2839 are separated by 89 nucleotides
Dshi_2836: Dshi_2836 - tryptophanyl-tRNA synthetase (RefSeq), at 2,994,331 to 2,995,356
_2836
Dshi_2837: Dshi_2837 - aminotransferase class IV (RefSeq), at 2,995,862 to 2,996,722
_2837
Dshi_2838: Dshi_2838 - UspA domain protein (RefSeq), at 2,996,802 to 2,997,257
_2838
Dshi_2839: Dshi_2839 - Scaffold protein Nfu/NifU (RefSeq), at 2,997,347 to 2,997,910
_2839
Position (kb)
2995
2996
2997 Strain fitness (log2 ratio)
-1
0
1
2 at 2995.483 kb on + strand at 2995.634 kb on - strand at 2995.965 kb on - strand, within Dshi_2837 at 2996.135 kb on + strand, within Dshi_2837 at 2996.269 kb on - strand, within Dshi_2837 at 2996.438 kb on - strand, within Dshi_2837 at 2996.551 kb on + strand, within Dshi_2837 at 2996.551 kb on + strand, within Dshi_2837 at 2996.851 kb on - strand, within Dshi_2838 at 2996.920 kb on - strand, within Dshi_2838 at 2996.952 kb on - strand, within Dshi_2838 at 2997.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 2,995,483 + -1.1 2,995,634 - -0.1 2,995,965 - Dshi_2837 0.12 +0.1 2,996,135 + Dshi_2837 0.32 -0.6 2,996,269 - Dshi_2837 0.47 +1.9 2,996,438 - Dshi_2837 0.67 -0.5 2,996,551 + Dshi_2837 0.80 -0.6 2,996,551 + Dshi_2837 0.80 -0.4 2,996,851 - Dshi_2838 0.11 -0.5 2,996,920 - Dshi_2838 0.26 -0.7 2,996,952 - Dshi_2838 0.33 -0.3 2,997,275 - +0.2
Or see this region's nucleotide sequence