Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0798 and Dshi_0799 are separated by 266 nucleotides Dshi_0799 and Dshi_0800 are separated by 162 nucleotides Dshi_0800 and Dshi_0801 are separated by 7 nucleotides
Dshi_0798: Dshi_0798 - acetylornithine and succinylornithine aminotransferase (RefSeq), at 804,432 to 805,613
_0798
Dshi_0799: Dshi_0799 - putative DNA-binding protein (RefSeq), at 805,880 to 806,218
_0799
Dshi_0800: Dshi_0800 - transcriptional regulator, IclR family (RefSeq), at 806,381 to 807,163
_0800
Dshi_0801: Dshi_0801 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 807,171 to 808,529
_0801
Position (kb) 806
807
808 Strain fitness (log2 ratio) -1
0
1
2 at 805.630 kb on + strand at 805.641 kb on + strand at 805.641 kb on + strand at 805.648 kb on + strand at 805.799 kb on + strand at 805.848 kb on - strand at 805.905 kb on + strand at 805.957 kb on - strand, within Dshi_0799 at 805.993 kb on - strand, within Dshi_0799 at 806.026 kb on + strand, within Dshi_0799 at 806.034 kb on - strand, within Dshi_0799 at 806.070 kb on + strand, within Dshi_0799 at 806.125 kb on - strand, within Dshi_0799 at 806.146 kb on + strand, within Dshi_0799 at 806.184 kb on + strand, within Dshi_0799 at 806.386 kb on - strand at 806.412 kb on - strand at 806.506 kb on + strand, within Dshi_0800 at 806.629 kb on + strand, within Dshi_0800 at 806.669 kb on - strand, within Dshi_0800 at 806.703 kb on + strand, within Dshi_0800 at 806.714 kb on + strand, within Dshi_0800 at 806.721 kb on - strand, within Dshi_0800 at 806.758 kb on + strand, within Dshi_0800 at 806.804 kb on - strand, within Dshi_0800 at 806.852 kb on - strand, within Dshi_0800 at 806.982 kb on - strand, within Dshi_0800 at 806.982 kb on - strand, within Dshi_0800 at 806.989 kb on - strand, within Dshi_0800 at 807.169 kb on + strand at 807.344 kb on - strand, within Dshi_0801 at 807.369 kb on - strand, within Dshi_0801 at 807.453 kb on + strand, within Dshi_0801 at 807.548 kb on + strand, within Dshi_0801 at 807.652 kb on + strand, within Dshi_0801 at 807.662 kb on + strand, within Dshi_0801 at 807.663 kb on + strand, within Dshi_0801 at 807.670 kb on - strand, within Dshi_0801 at 807.670 kb on - strand, within Dshi_0801 at 807.741 kb on + strand, within Dshi_0801 at 807.775 kb on - strand, within Dshi_0801 at 807.781 kb on - strand, within Dshi_0801 at 807.839 kb on + strand, within Dshi_0801 at 807.840 kb on + strand, within Dshi_0801 at 807.872 kb on + strand, within Dshi_0801 at 807.915 kb on + strand, within Dshi_0801 at 808.038 kb on + strand, within Dshi_0801 at 808.046 kb on - strand, within Dshi_0801 at 808.069 kb on + strand, within Dshi_0801 at 808.132 kb on + strand, within Dshi_0801 at 808.140 kb on - strand, within Dshi_0801
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 805,630 + -0.7 805,641 + -0.5 805,641 + -0.9 805,648 + -0.5 805,799 + +0.8 805,848 - +0.1 805,905 + +0.6 805,957 - Dshi_0799 0.23 -0.1 805,993 - Dshi_0799 0.33 +0.2 806,026 + Dshi_0799 0.43 +0.1 806,034 - Dshi_0799 0.45 +0.1 806,070 + Dshi_0799 0.56 -0.2 806,125 - Dshi_0799 0.72 -0.7 806,146 + Dshi_0799 0.78 +0.3 806,184 + Dshi_0799 0.90 -0.2 806,386 - +1.2 806,412 - +0.9 806,506 + Dshi_0800 0.16 +0.3 806,629 + Dshi_0800 0.32 -0.4 806,669 - Dshi_0800 0.37 +1.0 806,703 + Dshi_0800 0.41 +0.7 806,714 + Dshi_0800 0.43 -0.3 806,721 - Dshi_0800 0.43 +1.5 806,758 + Dshi_0800 0.48 +0.1 806,804 - Dshi_0800 0.54 +1.8 806,852 - Dshi_0800 0.60 -1.3 806,982 - Dshi_0800 0.77 +0.1 806,982 - Dshi_0800 0.77 +1.2 806,989 - Dshi_0800 0.78 +0.7 807,169 + +1.2 807,344 - Dshi_0801 0.13 +0.2 807,369 - Dshi_0801 0.15 +0.8 807,453 + Dshi_0801 0.21 +0.9 807,548 + Dshi_0801 0.28 -1.7 807,652 + Dshi_0801 0.35 -0.3 807,662 + Dshi_0801 0.36 +1.2 807,663 + Dshi_0801 0.36 -0.3 807,670 - Dshi_0801 0.37 -0.2 807,670 - Dshi_0801 0.37 +0.2 807,741 + Dshi_0801 0.42 -0.0 807,775 - Dshi_0801 0.44 -0.8 807,781 - Dshi_0801 0.45 -0.7 807,839 + Dshi_0801 0.49 +0.2 807,840 + Dshi_0801 0.49 -0.3 807,872 + Dshi_0801 0.52 +0.1 807,915 + Dshi_0801 0.55 +0.5 808,038 + Dshi_0801 0.64 -1.0 808,046 - Dshi_0801 0.64 -0.3 808,069 + Dshi_0801 0.66 -1.6 808,132 + Dshi_0801 0.71 -0.3 808,140 - Dshi_0801 0.71 -0.8
Or see this region's nucleotide sequence