Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0319 and Dshi_0320 are separated by 1 nucleotides Dshi_0320 and Dshi_0321 are separated by 15 nucleotides Dshi_0321 and Dshi_0322 are separated by 43 nucleotides
Dshi_0319: Dshi_0319 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 307,429 to 308,664
_0319
Dshi_0320: Dshi_0320 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 308,666 to 309,964
_0320
Dshi_0321: Dshi_0321 - ABC transporter related (RefSeq), at 309,980 to 310,756
_0321
Dshi_0322: Dshi_0322 - putative phosphohistidine phosphatase, SixA (RefSeq), at 310,800 to 311,300
_0322
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.674 kb on + strand, within Dshi_0319 at 307.740 kb on - strand, within Dshi_0319 at 307.782 kb on + strand, within Dshi_0319 at 307.887 kb on - strand, within Dshi_0319 at 307.946 kb on - strand, within Dshi_0319 at 307.965 kb on - strand, within Dshi_0319 at 307.968 kb on - strand, within Dshi_0319 at 307.983 kb on - strand, within Dshi_0319 at 307.993 kb on + strand, within Dshi_0319 at 307.995 kb on + strand, within Dshi_0319 at 308.111 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.233 kb on - strand, within Dshi_0319 at 308.269 kb on + strand, within Dshi_0319 at 308.351 kb on - strand, within Dshi_0319 at 308.357 kb on - strand, within Dshi_0319 at 308.363 kb on - strand, within Dshi_0319 at 308.459 kb on + strand, within Dshi_0319 at 308.524 kb on - strand, within Dshi_0319 at 308.549 kb on - strand at 308.559 kb on - strand at 308.594 kb on - strand at 308.622 kb on + strand at 308.703 kb on - strand at 308.778 kb on + strand at 308.786 kb on - strand at 308.798 kb on - strand, within Dshi_0320 at 308.816 kb on + strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.112 kb on + strand, within Dshi_0320 at 309.141 kb on - strand, within Dshi_0320 at 309.418 kb on + strand, within Dshi_0320 at 309.487 kb on - strand, within Dshi_0320 at 309.542 kb on + strand, within Dshi_0320 at 309.760 kb on + strand, within Dshi_0320 at 309.786 kb on - strand, within Dshi_0320 at 309.858 kb on + strand at 309.930 kb on + strand at 309.938 kb on - strand at 310.000 kb on - strand at 310.014 kb on + strand at 310.101 kb on + strand, within Dshi_0321 at 310.156 kb on + strand, within Dshi_0321 at 310.254 kb on + strand, within Dshi_0321 at 310.254 kb on + strand, within Dshi_0321 at 310.257 kb on - strand, within Dshi_0321 at 310.548 kb on - strand, within Dshi_0321
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 307,674 + Dshi_0319 0.20 +0.2 307,740 - Dshi_0319 0.25 -1.0 307,782 + Dshi_0319 0.29 +0.4 307,887 - Dshi_0319 0.37 -0.3 307,946 - Dshi_0319 0.42 -1.7 307,965 - Dshi_0319 0.43 -1.2 307,968 - Dshi_0319 0.44 -0.5 307,983 - Dshi_0319 0.45 -0.1 307,993 + Dshi_0319 0.46 +1.2 307,995 + Dshi_0319 0.46 -0.5 308,111 + Dshi_0319 0.55 -0.6 308,210 + Dshi_0319 0.63 -0.4 308,210 + Dshi_0319 0.63 +0.1 308,210 + Dshi_0319 0.63 +0.3 308,218 - Dshi_0319 0.64 -0.9 308,218 - Dshi_0319 0.64 -0.4 308,233 - Dshi_0319 0.65 +0.4 308,269 + Dshi_0319 0.68 -0.3 308,351 - Dshi_0319 0.75 -1.0 308,357 - Dshi_0319 0.75 -0.3 308,363 - Dshi_0319 0.76 -0.2 308,459 + Dshi_0319 0.83 +2.1 308,524 - Dshi_0319 0.89 +1.8 308,549 - -0.3 308,559 - -1.8 308,594 - -0.4 308,622 + -1.1 308,703 - +0.2 308,778 + -0.2 308,786 - -0.8 308,798 - Dshi_0320 0.10 -0.7 308,816 + Dshi_0320 0.12 -1.0 309,010 - Dshi_0320 0.26 +0.2 309,010 - Dshi_0320 0.26 -0.7 309,010 - Dshi_0320 0.26 +0.3 309,010 - Dshi_0320 0.26 -0.8 309,010 - Dshi_0320 0.26 -1.2 309,112 + Dshi_0320 0.34 -0.9 309,141 - Dshi_0320 0.37 +0.0 309,418 + Dshi_0320 0.58 +1.6 309,487 - Dshi_0320 0.63 -1.3 309,542 + Dshi_0320 0.67 -0.6 309,760 + Dshi_0320 0.84 -0.9 309,786 - Dshi_0320 0.86 -1.3 309,858 + -0.6 309,930 + +0.1 309,938 - -2.3 310,000 - +0.0 310,014 + +0.3 310,101 + Dshi_0321 0.16 -1.2 310,156 + Dshi_0321 0.23 -1.0 310,254 + Dshi_0321 0.35 +0.3 310,254 + Dshi_0321 0.35 -0.0 310,257 - Dshi_0321 0.36 -0.7 310,548 - Dshi_0321 0.73 -1.7
Or see this region's nucleotide sequence