Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08595

Experiment: casaminos 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 2 mg/mL
1,871,977	-		LRK54_RS08585	0.62	+0.9
1,871,977	-		LRK54_RS08585	0.62	+0.8
1,872,153	+		LRK54_RS08585	0.73	-0.1
1,872,153	+		LRK54_RS08585	0.73	-1.0
1,872,153	+		LRK54_RS08585	0.73	+0.2
1,872,153	+		LRK54_RS08585	0.73	-1.0
1,872,153	+		LRK54_RS08585	0.73	+1.4
1,872,153	+		LRK54_RS08585	0.73	+0.5
1,872,153	+		LRK54_RS08585	0.73	-0.2
1,872,153	+		LRK54_RS08585	0.73	+1.8
1,872,153	+		LRK54_RS08585	0.73	-0.8
1,872,153	+		LRK54_RS08585	0.73	+0.1
1,872,153	+		LRK54_RS08585	0.73	+0.5
1,872,153	+		LRK54_RS08585	0.73	-1.0
1,872,153	+		LRK54_RS08585	0.73	-1.1
1,872,153	+		LRK54_RS08585	0.73	-0.3
1,872,153	+		LRK54_RS08585	0.73	+0.3
1,872,153	+		LRK54_RS08585	0.73	+1.4
1,872,153	+		LRK54_RS08585	0.73	+0.0
1,872,153	+		LRK54_RS08585	0.73	+0.8
1,872,153	+		LRK54_RS08585	0.73	-0.8
1,872,153	+		LRK54_RS08585	0.73	-0.2
1,872,153	+		LRK54_RS08585	0.73	+0.2
1,872,153	+		LRK54_RS08585	0.73	+0.4
1,872,153	+		LRK54_RS08585	0.73	-1.1
1,872,153	+		LRK54_RS08585	0.73	-0.6
1,872,153	+		LRK54_RS08585	0.73	-1.2
1,872,153	+		LRK54_RS08585	0.73	+0.8
1,872,153	+		LRK54_RS08585	0.73	-0.3
1,872,153	+		LRK54_RS08585	0.73	+0.4
1,872,153	+		LRK54_RS08585	0.73	-0.3
1,872,153	+		LRK54_RS08585	0.73	-0.5
1,872,153	+		LRK54_RS08585	0.73	-1.6
1,872,153	+		LRK54_RS08585	0.73	+0.4
1,872,153	+		LRK54_RS08585	0.73	+0.4
1,872,154	-		LRK54_RS08585	0.73	-0.8
1,872,154	-		LRK54_RS08585	0.73	+1.8
1,872,154	-		LRK54_RS08585	0.73	+0.6
1,872,154	-		LRK54_RS08585	0.73	+0.1
1,872,154	-		LRK54_RS08585	0.73	-2.3
1,872,154	-		LRK54_RS08585	0.73	-1.5
1,872,154	-		LRK54_RS08585	0.73	-2.0
1,872,154	-		LRK54_RS08585	0.73	-0.2
1,872,154	-		LRK54_RS08585	0.73	-0.6
1,872,154	-		LRK54_RS08585	0.73	+1.1
1,872,154	-		LRK54_RS08585	0.73	-0.5
1,872,154	-		LRK54_RS08585	0.73	-0.9
1,872,154	-		LRK54_RS08585	0.73	+2.8
1,872,154	-		LRK54_RS08585	0.73	-0.4
1,872,154	-		LRK54_RS08585	0.73	-0.1
1,872,154	-		LRK54_RS08585	0.73	-0.1
1,872,154	-		LRK54_RS08585	0.73	-1.6
1,872,154	-		LRK54_RS08585	0.73	+0.8
1,872,154	-		LRK54_RS08585	0.73	+1.6
1,872,154	-		LRK54_RS08585	0.73	-0.2
1,872,154	-		LRK54_RS08585	0.73	-2.1
1,872,154	-		LRK54_RS08585	0.73	-1.5
1,872,154	-		LRK54_RS08585	0.73	+0.1
1,872,154	-		LRK54_RS08585	0.73	-0.8
1,872,154	-		LRK54_RS08585	0.73	-0.8
1,872,154	-		LRK54_RS08585	0.73	+0.0
1,872,154	-		LRK54_RS08585	0.73	-0.8
1,872,154	-		LRK54_RS08585	0.73	-1.1
1,872,154	-		LRK54_RS08585	0.73	-0.3
1,872,154	-		LRK54_RS08585	0.73	-0.5
1,872,154	-		LRK54_RS08585	0.73	-0.1
1,872,159	+		LRK54_RS08585	0.74	-1.1
1,872,159	+		LRK54_RS08585	0.74	+0.3
1,872,159	+		LRK54_RS08585	0.74	-1.9
1,872,159	+		LRK54_RS08585	0.74	-0.5
1,872,159	+		LRK54_RS08585	0.74	-1.0
1,872,159	+		LRK54_RS08585	0.74	+1.4
1,872,159	+		LRK54_RS08585	0.74	-0.4
1,872,159	+		LRK54_RS08585	0.74	-1.2
1,872,159	+		LRK54_RS08585	0.74	-0.1
1,872,159	+		LRK54_RS08585	0.74	-1.2
1,872,159	+		LRK54_RS08585	0.74	-1.0
1,872,159	+		LRK54_RS08585	0.74	-0.3
1,872,159	+		LRK54_RS08585	0.74	-0.5
1,872,160	-		LRK54_RS08585	0.74	+0.5
1,872,160	-		LRK54_RS08585	0.74	+1.1
1,872,160	-		LRK54_RS08585	0.74	-1.6
1,872,160	-		LRK54_RS08585	0.74	-2.6
1,872,160	-		LRK54_RS08585	0.74	-1.4
1,872,160	-		LRK54_RS08585	0.74	+1.0
1,872,160	-		LRK54_RS08585	0.74	+1.8
1,872,160	-		LRK54_RS08585	0.74	+1.5
1,872,160	-		LRK54_RS08585	0.74	-0.8
1,872,160	-		LRK54_RS08585	0.74	-1.6
1,872,160	-		LRK54_RS08585	0.74	-0.2
1,872,160	-		LRK54_RS08585	0.74	-0.3
1,872,160	-		LRK54_RS08585	0.74	-1.3
1,872,160	-		LRK54_RS08585	0.74	+1.5
1,872,160	-		LRK54_RS08585	0.74	+0.2
1,872,160	-		LRK54_RS08585	0.74	-1.1
1,872,160	-		LRK54_RS08585	0.74	+0.8
1,872,160	-		LRK54_RS08585	0.74	-0.2
1,872,207	+		LRK54_RS08585	0.77	-1.1
1,872,207	+		LRK54_RS08585	0.77	-0.7
1,872,207	+		LRK54_RS08585	0.77	-0.1
1,872,207	+		LRK54_RS08585	0.77	+1.4
1,872,207	+		LRK54_RS08585	0.77	+0.1
1,872,207	+		LRK54_RS08585	0.77	+1.1
1,872,207	+		LRK54_RS08585	0.77	-0.6
1,872,207	+		LRK54_RS08585	0.77	-2.2
1,872,207	+		LRK54_RS08585	0.77	-0.3
1,872,207	+		LRK54_RS08585	0.77	-0.4
1,872,207	+		LRK54_RS08585	0.77	-0.6
1,872,207	+		LRK54_RS08585	0.77	-1.0
1,872,207	+		LRK54_RS08585	0.77	-0.3
1,872,207	+		LRK54_RS08585	0.77	-0.3
1,872,207	+		LRK54_RS08585	0.77	+0.5
1,872,207	+		LRK54_RS08585	0.77	-0.2
1,872,207	+		LRK54_RS08585	0.77	+2.1
1,872,207	+		LRK54_RS08585	0.77	+0.1
1,872,207	+		LRK54_RS08585	0.77	+0.2
1,872,208	-		LRK54_RS08585	0.77	+0.5
1,872,208	-		LRK54_RS08585	0.77	+0.3
1,872,208	-		LRK54_RS08585	0.77	-1.2
1,872,208	-		LRK54_RS08585	0.77	+1.5
1,872,208	-		LRK54_RS08585	0.77	+0.0
1,872,208	-		LRK54_RS08585	0.77	+0.2
1,872,208	-		LRK54_RS08585	0.77	-0.2
1,872,208	-		LRK54_RS08585	0.77	-0.2
1,872,208	-		LRK54_RS08585	0.77	-0.5
1,872,208	-		LRK54_RS08585	0.77	-1.2
1,872,208	-		LRK54_RS08585	0.77	-0.5
1,872,219	+		LRK54_RS08585	0.78	+0.6
1,872,219	+		LRK54_RS08585	0.78	-0.5
1,872,219	+		LRK54_RS08585	0.78	-0.3
1,872,219	+		LRK54_RS08585	0.78	-1.2
1,872,219	+		LRK54_RS08585	0.78	-0.8
1,872,219	+		LRK54_RS08585	0.78	+1.0
1,872,219	+		LRK54_RS08585	0.78	+0.7
1,872,219	+		LRK54_RS08585	0.78	+0.1
1,872,219	+		LRK54_RS08585	0.78	+0.7
1,872,219	+		LRK54_RS08585	0.78	-0.5
1,872,219	+		LRK54_RS08585	0.78	+1.8
1,872,219	+		LRK54_RS08585	0.78	-0.2
1,872,219	+		LRK54_RS08585	0.78	+1.1
1,872,219	+		LRK54_RS08585	0.78	+0.2
1,872,219	+		LRK54_RS08585	0.78	+0.8
1,872,219	+		LRK54_RS08585	0.78	+0.5
1,872,219	+		LRK54_RS08585	0.78	-0.5
1,872,219	+		LRK54_RS08585	0.78	-0.6
1,872,219	+		LRK54_RS08585	0.78	-1.7
1,872,219	+		LRK54_RS08585	0.78	+0.4
1,872,219	+		LRK54_RS08585	0.78	+0.1
1,872,219	+		LRK54_RS08585	0.78	+0.5
1,872,219	+		LRK54_RS08585	0.78	-1.5
1,872,219	+		LRK54_RS08585	0.78	+0.7
1,872,219	+		LRK54_RS08585	0.78	+1.0
1,872,219	+		LRK54_RS08585	0.78	-0.3
1,872,219	+		LRK54_RS08585	0.78	-2.2
1,872,219	+		LRK54_RS08585	0.78	+0.2
1,872,220	-		LRK54_RS08585	0.78	+1.8
1,872,220	-		LRK54_RS08585	0.78	-1.0
1,872,220	-		LRK54_RS08585	0.78	-2.3
1,872,220	-		LRK54_RS08585	0.78	-1.9
1,872,220	-		LRK54_RS08585	0.78	+0.5
1,872,220	-		LRK54_RS08585	0.78	-0.8
1,872,220	-		LRK54_RS08585	0.78	+0.4
1,872,220	-		LRK54_RS08585	0.78	-1.2
1,872,220	-		LRK54_RS08585	0.78	-0.5
1,872,220	-		LRK54_RS08585	0.78	-0.5
1,872,220	-		LRK54_RS08585	0.78	+0.3
1,872,220	-		LRK54_RS08585	0.78	-1.2
1,872,220	-		LRK54_RS08585	0.78	+0.2
1,872,220	-		LRK54_RS08585	0.78	-0.5
1,872,220	-		LRK54_RS08585	0.78	-0.3
1,872,220	-		LRK54_RS08585	0.78	+0.8
1,872,220	-		LRK54_RS08585	0.78	-0.8
1,872,220	-		LRK54_RS08585	0.78	+1.0
1,872,220	-		LRK54_RS08585	0.78	+0.8
1,872,220	-		LRK54_RS08585	0.78	-1.3
1,872,220	-		LRK54_RS08585	0.78	-1.1
1,872,221	+		LRK54_RS08585	0.78	+0.5
1,872,222	+		LRK54_RS08585	0.78	-0.2
1,872,222	+		LRK54_RS08585	0.78	+0.1
1,872,222	+		LRK54_RS08585	0.78	-1.2
1,872,222	+		LRK54_RS08585	0.78	+1.2
1,872,222	+		LRK54_RS08585	0.78	-0.2
1,872,222	+		LRK54_RS08585	0.78	-0.3
1,872,222	+		LRK54_RS08585	0.78	+0.8
1,872,222	+		LRK54_RS08585	0.78	-0.6
1,872,222	+		LRK54_RS08585	0.78	-0.5
1,872,222	+		LRK54_RS08585	0.78	+0.0
1,872,222	+		LRK54_RS08585	0.78	-1.4
1,872,222	+		LRK54_RS08585	0.78	-0.3
1,872,222	+		LRK54_RS08585	0.78	+1.0
1,872,222	+		LRK54_RS08585	0.78	+1.0
1,872,222	+		LRK54_RS08585	0.78	+1.0
1,872,222	+		LRK54_RS08585	0.78	+0.8
1,872,222	+		LRK54_RS08585	0.78	+1.6
1,872,222	+		LRK54_RS08585	0.78	-1.9
1,872,222	+		LRK54_RS08585	0.78	-0.9
1,872,222	+		LRK54_RS08585	0.78	-1.8
1,872,222	+		LRK54_RS08585	0.78	+0.1
1,872,222	+		LRK54_RS08585	0.78	+0.3
1,872,222	+		LRK54_RS08585	0.78	-1.0
1,872,222	+		LRK54_RS08585	0.78	-0.1
1,872,222	+		LRK54_RS08585	0.78	+0.5
1,872,222	+		LRK54_RS08585	0.78	-0.2
1,872,222	+		LRK54_RS08585	0.78	-0.1
1,872,222	+		LRK54_RS08585	0.78	-0.7
1,872,222	+		LRK54_RS08585	0.78	-1.0
1,872,222	+		LRK54_RS08585	0.78	-0.2
1,872,223	-		LRK54_RS08585	0.78	+0.4
1,872,223	-		LRK54_RS08585	0.78	+0.8
1,872,223	-		LRK54_RS08585	0.78	+2.2
1,872,223	-		LRK54_RS08585	0.78	-0.2
1,872,223	-		LRK54_RS08585	0.78	-0.3
1,872,223	-		LRK54_RS08585	0.78	-1.4
1,872,223	-		LRK54_RS08585	0.78	+0.6
1,872,223	-		LRK54_RS08585	0.78	+0.8
1,872,223	-		LRK54_RS08585	0.78	+0.0
1,872,223	-		LRK54_RS08585	0.78	+0.5
1,872,223	-		LRK54_RS08585	0.78	-0.7
1,872,223	-		LRK54_RS08585	0.78	+0.6
1,872,223	-		LRK54_RS08585	0.78	-0.3
1,872,223	-		LRK54_RS08585	0.78	-1.0
1,872,223	-		LRK54_RS08585	0.78	-2.0
1,872,223	-		LRK54_RS08585	0.78	+0.1
1,872,223	-		LRK54_RS08585	0.78	-2.2
1,872,223	-		LRK54_RS08585	0.78	-0.3
1,872,223	-		LRK54_RS08585	0.78	+0.6
1,872,223	-		LRK54_RS08585	0.78	-0.3
1,872,223	-		LRK54_RS08585	0.78	+0.8
1,872,223	-		LRK54_RS08585	0.78	+0.6
1,872,223	-		LRK54_RS08585	0.78	-1.0
1,872,249	+		LRK54_RS08585	0.80	-1.2
1,872,249	+		LRK54_RS08585	0.80	-1.3
1,872,249	+		LRK54_RS08585	0.80	+0.8
1,872,249	+		LRK54_RS08585	0.80	-0.2
1,872,249	+		LRK54_RS08585	0.80	-0.6
1,872,249	+		LRK54_RS08585	0.80	-1.3
1,872,249	+		LRK54_RS08585	0.80	-0.6
1,872,249	+		LRK54_RS08585	0.80	-0.2
1,872,249	+		LRK54_RS08585	0.80	-0.4
1,872,249	+		LRK54_RS08585	0.80	+0.1
1,872,249	+		LRK54_RS08585	0.80	+0.0
1,872,249	+		LRK54_RS08585	0.80	+0.2
1,872,249	+		LRK54_RS08585	0.80	-1.0
1,872,249	+		LRK54_RS08585	0.80	+0.4
1,872,249	+		LRK54_RS08585	0.80	+0.8
1,872,249	+		LRK54_RS08585	0.80	+1.6
1,872,249	+		LRK54_RS08585	0.80	+0.2
1,872,249	+		LRK54_RS08585	0.80	+0.2
1,872,250	-		LRK54_RS08585	0.80	-0.1
1,872,250	-		LRK54_RS08585	0.80	-2.2
1,872,250	-		LRK54_RS08585	0.80	-1.0
1,872,250	-		LRK54_RS08585	0.80	-0.2
1,872,250	-		LRK54_RS08585	0.80	-1.2
1,872,250	-		LRK54_RS08585	0.80	+0.6
1,872,250	-		LRK54_RS08585	0.80	-0.5
1,872,250	-		LRK54_RS08585	0.80	+0.8
1,872,250	-		LRK54_RS08585	0.80	-1.3
1,872,250	-		LRK54_RS08585	0.80	+0.1
1,872,250	-		LRK54_RS08585	0.80	-0.1
1,872,250	-		LRK54_RS08585	0.80	+1.8
1,872,250	-		LRK54_RS08585	0.80	+2.1
1,872,250	-		LRK54_RS08585	0.80	+0.5
1,872,250	-		LRK54_RS08585	0.80	-1.1
1,872,250	-		LRK54_RS08585	0.80	+1.4
1,872,250	-		LRK54_RS08585	0.80	+0.5
1,872,250	-		LRK54_RS08585	0.80	+0.4
1,872,250	-		LRK54_RS08585	0.80	-0.5
1,872,250	-		LRK54_RS08585	0.80	+0.4
1,872,372	+		LRK54_RS08585	0.88	-1.0
1,872,372	+		LRK54_RS08585	0.88	-1.3
1,872,372	+		LRK54_RS08585	0.88	-0.7
1,872,372	+		LRK54_RS08585	0.88	+1.8
1,872,372	+		LRK54_RS08585	0.88	-0.5
1,872,373	-		LRK54_RS08585	0.88	+1.8
1,872,373	-		LRK54_RS08585	0.88	+1.8
1,872,373	-		LRK54_RS08585	0.88	-0.6
1,872,373	-		LRK54_RS08585	0.88	-1.3
1,872,373	-		LRK54_RS08585	0.88	-2.2
1,872,373	-		LRK54_RS08585	0.88	+0.4
1,872,462	+				+1.0
1,872,462	+				+2.4
1,872,462	+				-0.2
1,872,462	+				+0.6
1,872,462	+				-0.2
1,872,462	+				+0.4
1,872,463	-				-0.0
1,872,463	-				+0.1
1,872,463	-				-0.1
1,872,463	-				-0.9
1,872,463	-				+0.2
1,872,480	+				-1.3
1,872,480	+				-1.1
1,872,480	+				-1.8
1,872,480	+				-0.2
1,872,480	+				+0.7
1,872,480	+				+1.8
1,872,480	+				-0.8
1,872,480	+				-0.2
1,872,480	+				-1.3
1,872,480	+				-0.5
1,872,480	+				+0.6
1,872,480	+				+0.7
1,872,480	+				-0.6
1,872,480	+				+1.1
1,872,480	+				+2.2
1,872,480	+				-0.7
1,872,480	+				-0.8
1,872,480	+				-2.3
1,872,480	+				-2.1
1,872,480	+				-0.3
1,872,480	+				-1.0
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1,874,414	+		LRK54_RS08605	0.48	-0.3
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