Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07830

Experiment: casaminos 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 2 mg/mL
1,706,900	+		LRK54_RS07825	0.75	-0.1
1,706,900	+		LRK54_RS07825	0.75	-0.2
1,706,900	+		LRK54_RS07825	0.75	+0.9
1,706,900	+		LRK54_RS07825	0.75	-1.0
1,706,900	+		LRK54_RS07825	0.75	-0.5
1,706,900	+		LRK54_RS07825	0.75	+0.4
1,706,900	+		LRK54_RS07825	0.75	-0.1
1,706,900	+		LRK54_RS07825	0.75	-0.4
1,706,900	+		LRK54_RS07825	0.75	-0.2
1,706,900	+		LRK54_RS07825	0.75	-0.1
1,706,900	+		LRK54_RS07825	0.75	-0.6
1,706,901	-		LRK54_RS07825	0.75	-0.7
1,706,901	-		LRK54_RS07825	0.75	-0.0
1,706,901	-		LRK54_RS07825	0.75	+0.6
1,706,901	-		LRK54_RS07825	0.75	-0.7
1,706,901	-		LRK54_RS07825	0.75	+2.5
1,706,901	-		LRK54_RS07825	0.75	-0.4
1,706,901	-		LRK54_RS07825	0.75	-0.9
1,706,901	-		LRK54_RS07825	0.75	-0.2
1,706,901	-		LRK54_RS07825	0.75	+1.5
1,706,901	-		LRK54_RS07825	0.75	+0.4
1,706,901	-		LRK54_RS07825	0.75	+1.0
1,706,901	-		LRK54_RS07825	0.75	+0.2
1,706,901	-		LRK54_RS07825	0.75	-1.1
1,706,901	-		LRK54_RS07825	0.75	+0.5
1,706,901	-		LRK54_RS07825	0.75	-1.1
1,707,245	+		LRK54_RS07825	0.85	+0.1
1,707,245	+		LRK54_RS07825	0.85	-0.7
1,707,245	+		LRK54_RS07825	0.85	+0.9
1,707,245	+		LRK54_RS07825	0.85	-0.1
1,707,245	+		LRK54_RS07825	0.85	-0.2
1,707,245	+		LRK54_RS07825	0.85	+0.6
1,707,245	+		LRK54_RS07825	0.85	+0.6
1,707,245	+		LRK54_RS07825	0.85	+0.1
1,707,245	+		LRK54_RS07825	0.85	-0.9
1,707,245	+		LRK54_RS07825	0.85	-1.8
1,707,245	+		LRK54_RS07825	0.85	-0.2
1,707,246	-		LRK54_RS07825	0.85	-0.9
1,707,246	-		LRK54_RS07825	0.85	-1.7
1,707,246	-		LRK54_RS07825	0.85	-0.8
1,707,246	-		LRK54_RS07825	0.85	-1.2
1,707,246	-		LRK54_RS07825	0.85	-0.4
1,707,246	-		LRK54_RS07825	0.85	-0.1
1,707,246	-		LRK54_RS07825	0.85	-0.6
1,707,246	-		LRK54_RS07825	0.85	-0.9
1,707,246	-		LRK54_RS07825	0.85	-0.1
1,707,246	-		LRK54_RS07825	0.85	-0.7
1,707,246	-		LRK54_RS07825	0.85	+0.1
1,707,246	-		LRK54_RS07825	0.85	-0.8
1,707,323	+		LRK54_RS07825	0.88	+1.9
1,707,323	+		LRK54_RS07825	0.88	-0.6
1,707,323	+		LRK54_RS07825	0.88	-1.0
1,707,323	+		LRK54_RS07825	0.88	-0.9
1,707,323	+		LRK54_RS07825	0.88	-0.5
1,707,323	+		LRK54_RS07825	0.88	+1.1
1,707,324	-		LRK54_RS07825	0.88	+1.2
1,707,324	-		LRK54_RS07825	0.88	+0.1
1,707,324	-		LRK54_RS07825	0.88	-0.2
1,707,324	-		LRK54_RS07825	0.88	+1.9
1,707,324	-		LRK54_RS07825	0.88	-0.4
1,707,324	-		LRK54_RS07825	0.88	+0.9
1,707,623	+				-0.5
1,707,623	+				+0.9
1,707,623	+				-0.1
1,707,624	-				-0.2
1,707,624	-				+0.2
1,707,624	-				+0.1
1,707,624	-				+0.4
1,707,624	-				+0.0
1,707,624	-				-0.9
1,707,702	+				+0.6
1,707,702	+				-0.2
1,707,702	+				-0.4
1,707,702	+				+0.5
1,707,702	+				-0.4
1,707,702	+				+0.3
1,707,702	+				-0.1
1,707,702	+				-2.3
1,707,702	+				+1.5
1,707,702	+				-0.5
1,707,702	+				-0.6
1,707,703	-				+0.1
1,707,703	-				+1.1
1,707,703	-				+0.3
1,707,703	-				+1.1
1,707,703	-				+0.0
1,707,703	-				-2.2
1,707,791	+				+0.1
1,707,791	+				+0.1
1,707,791	+				+0.1
1,707,792	-				-0.6
1,707,792	-				-0.1
1,707,792	-				-0.7
1,707,792	-				-0.1
1,707,899	-				+0.3
1,707,899	-				-0.9
1,707,899	-				-1.4
1,707,940	+				-0.9
1,707,940	+				-0.3
1,707,940	+				-1.7
1,707,940	+				-0.9
1,707,940	+				-1.1
1,707,940	+				-0.7
1,707,940	+				+0.7
1,707,940	+				+0.3
1,707,940	+				-0.1
1,707,940	+				+0.6
1,707,940	+				-1.7
1,707,940	+				-0.3
1,707,941	-				-0.2
1,707,941	-				-1.9
1,707,941	-				-1.1
1,707,941	-				-1.1
1,707,941	-				+0.9
1,707,941	-				-1.7
1,707,941	-				-0.0
1,707,941	-				-0.6
1,707,941	-				-1.3
1,707,941	-				-2.5
1,707,941	-				-0.5
1,707,941	-				-2.7
1,707,941	-				-1.0
1,707,941	-				+0.3
1,707,941	-				-1.2
1,707,941	-				-1.0
1,707,941	-				+0.3
1,707,955	+				-1.5
1,707,955	+				+0.9
1,707,955	+				-1.1
1,707,955	+				+0.3
1,707,955	+				+0.6
1,707,956	-				-1.3
1,707,956	-				-0.1
1,707,956	-				+0.3
1,707,956	-				-0.1
1,707,956	-				-1.7
1,707,956	-				-0.8
1,707,956	-				-0.7
1,707,956	-				+0.9
1,708,043	-				-1.2
1,708,078	+		LRK54_RS07830	0.11	-1.1
1,708,078	+		LRK54_RS07830	0.11	+0.7
1,708,078	+		LRK54_RS07830	0.11	-0.9
1,708,078	+		LRK54_RS07830	0.11	-0.9
1,708,078	+		LRK54_RS07830	0.11	-0.7
1,708,078	+		LRK54_RS07830	0.11	-2.3
1,708,078	+		LRK54_RS07830	0.11	-0.9
1,708,078	+		LRK54_RS07830	0.11	-0.5
1,708,078	+		LRK54_RS07830	0.11	-0.5
1,708,078	+		LRK54_RS07830	0.11	-1.0
1,708,079	-		LRK54_RS07830	0.11	-0.7
1,708,079	-		LRK54_RS07830	0.11	+0.3
1,708,079	-		LRK54_RS07830	0.11	-0.7
1,708,079	-		LRK54_RS07830	0.11	+0.3
1,708,079	-		LRK54_RS07830	0.11	-1.1
1,708,079	-		LRK54_RS07830	0.11	-1.1
1,708,079	-		LRK54_RS07830	0.11	+0.9
1,708,126	+		LRK54_RS07830	0.13	+1.9
1,708,126	+		LRK54_RS07830	0.13	-0.6
1,708,126	+		LRK54_RS07830	0.13	-0.5
1,708,126	+		LRK54_RS07830	0.13	-0.7
1,708,127	-		LRK54_RS07830	0.13	+0.5
1,708,127	-		LRK54_RS07830	0.13	+0.3
1,708,127	-		LRK54_RS07830	0.13	-0.1
1,708,127	-		LRK54_RS07830	0.13	-0.6
1,708,127	-		LRK54_RS07830	0.13	-1.0
1,708,127	-		LRK54_RS07830	0.13	-0.3
1,708,127	-		LRK54_RS07830	0.13	+0.5
1,708,127	-		LRK54_RS07830	0.13	-0.2
1,708,127	-		LRK54_RS07830	0.13	-0.5
1,708,127	-		LRK54_RS07830	0.13	-0.7
1,708,231	+		LRK54_RS07830	0.19	+0.5
1,708,231	+		LRK54_RS07830	0.19	-1.7
1,708,231	+		LRK54_RS07830	0.19	-0.9
1,708,231	+		LRK54_RS07830	0.19	-0.9
1,708,231	+		LRK54_RS07830	0.19	-0.4
1,708,231	+		LRK54_RS07830	0.19	+0.7
1,708,231	+		LRK54_RS07830	0.19	+0.5
1,708,232	-		LRK54_RS07830	0.19	-0.9
1,708,232	-		LRK54_RS07830	0.19	-0.9
1,708,232	-		LRK54_RS07830	0.19	-1.6
1,708,232	-		LRK54_RS07830	0.19	+0.5
1,708,318	+		LRK54_RS07830	0.24	-2.1
1,708,318	+		LRK54_RS07830	0.24	-1.1
1,708,318	+		LRK54_RS07830	0.24	-1.1
1,708,318	+		LRK54_RS07830	0.24	-1.7
1,708,318	+		LRK54_RS07830	0.24	-0.9
1,708,318	+		LRK54_RS07830	0.24	-0.7
1,708,318	+		LRK54_RS07830	0.24	-1.9
1,708,318	+		LRK54_RS07830	0.24	-2.2
1,708,318	+		LRK54_RS07830	0.24	-1.1
1,708,318	+		LRK54_RS07830	0.24	-2.3
1,708,318	+		LRK54_RS07830	0.24	-1.5
1,708,318	+		LRK54_RS07830	0.24	-2.2
1,708,318	+		LRK54_RS07830	0.24	-1.8
1,708,318	+		LRK54_RS07830	0.24	-1.0
1,708,318	+		LRK54_RS07830	0.24	-1.3
1,708,318	+		LRK54_RS07830	0.24	+0.3
1,708,318	+		LRK54_RS07830	0.24	-0.1
1,708,318	+		LRK54_RS07830	0.24	+1.0
1,708,318	+		LRK54_RS07830	0.24	-0.1
1,708,318	+		LRK54_RS07830	0.24	+0.1
1,708,318	+		LRK54_RS07830	0.24	-1.7
1,708,318	+		LRK54_RS07830	0.24	-1.4
1,708,318	+		LRK54_RS07830	0.24	-0.3
1,708,318	+		LRK54_RS07830	0.24	+0.6
1,708,319	-		LRK54_RS07830	0.24	-1.5
1,708,319	-		LRK54_RS07830	0.24	-0.7
1,708,319	-		LRK54_RS07830	0.24	-1.6
1,708,319	-		LRK54_RS07830	0.24	-0.8
1,708,319	-		LRK54_RS07830	0.24	-1.1
1,708,319	-		LRK54_RS07830	0.24	-0.3
1,708,319	-		LRK54_RS07830	0.24	-0.9
1,708,319	-		LRK54_RS07830	0.24	-1.7
1,708,319	-		LRK54_RS07830	0.24	+1.3
1,708,319	-		LRK54_RS07830	0.24	+0.5
1,708,319	-		LRK54_RS07830	0.24	-2.1
1,708,319	-		LRK54_RS07830	0.24	-1.1
1,708,319	-		LRK54_RS07830	0.24	+1.9
1,708,319	-		LRK54_RS07830	0.24	+1.5
1,708,319	-		LRK54_RS07830	0.24	-1.7
1,708,319	-		LRK54_RS07830	0.24	-0.5
1,708,319	-		LRK54_RS07830	0.24	+0.3
1,708,319	-		LRK54_RS07830	0.24	-1.9
1,708,319	-		LRK54_RS07830	0.24	+0.9
1,708,319	-		LRK54_RS07830	0.24	-1.0
1,708,319	-		LRK54_RS07830	0.24	-0.5
1,708,319	-		LRK54_RS07830	0.24	-0.6
1,708,319	-		LRK54_RS07830	0.24	-0.5
1,708,319	-		LRK54_RS07830	0.24	-1.8
1,708,319	-		LRK54_RS07830	0.24	+2.3
1,708,319	-		LRK54_RS07830	0.24	-0.8
1,708,360	+		LRK54_RS07830	0.26	+0.5
1,708,459	+		LRK54_RS07830	0.31	-2.1
1,708,459	+		LRK54_RS07830	0.31	+0.4
1,708,460	-		LRK54_RS07830	0.31	+0.3
1,708,465	+		LRK54_RS07830	0.32	+1.3
1,708,465	+		LRK54_RS07830	0.32	-0.2
1,708,465	+		LRK54_RS07830	0.32	-1.2
1,708,466	-		LRK54_RS07830	0.32	-2.7
1,708,466	-		LRK54_RS07830	0.32	-1.1
1,708,466	-		LRK54_RS07830	0.32	-1.4
1,708,468	+		LRK54_RS07830	0.32	+2.2
1,708,468	+		LRK54_RS07830	0.32	-0.5
1,708,468	+		LRK54_RS07830	0.32	+1.3
1,708,468	+		LRK54_RS07830	0.32	-1.6
1,708,468	+		LRK54_RS07830	0.32	-0.6
1,708,468	+		LRK54_RS07830	0.32	-0.5
1,708,468	+		LRK54_RS07830	0.32	+0.5
1,708,468	+		LRK54_RS07830	0.32	-0.8
1,708,468	+		LRK54_RS07830	0.32	-0.7
1,708,468	+		LRK54_RS07830	0.32	-0.5
1,708,468	+		LRK54_RS07830	0.32	-1.0
1,708,468	+		LRK54_RS07830	0.32	-1.3
1,708,468	+		LRK54_RS07830	0.32	+1.4
1,708,468	+		LRK54_RS07830	0.32	-1.8
1,708,468	+		LRK54_RS07830	0.32	-0.2
1,708,468	+		LRK54_RS07830	0.32	+0.5
1,708,468	+		LRK54_RS07830	0.32	-0.7
1,708,468	+		LRK54_RS07830	0.32	-1.1
1,708,468	+		LRK54_RS07830	0.32	-0.5
1,708,468	+		LRK54_RS07830	0.32	-1.7
1,708,468	+		LRK54_RS07830	0.32	-1.1
1,708,468	+		LRK54_RS07830	0.32	-1.9
1,708,468	+		LRK54_RS07830	0.32	+1.4
1,708,468	+		LRK54_RS07830	0.32	-0.1
1,708,468	+		LRK54_RS07830	0.32	-0.6
1,708,468	+		LRK54_RS07830	0.32	-1.3
1,708,468	+		LRK54_RS07830	0.32	-0.7
1,708,468	+		LRK54_RS07830	0.32	+0.9
1,708,469	-		LRK54_RS07830	0.32	-0.2
1,708,469	-		LRK54_RS07830	0.32	-1.8
1,708,469	-		LRK54_RS07830	0.32	-0.4
1,708,469	-		LRK54_RS07830	0.32	-0.9
1,708,469	-		LRK54_RS07830	0.32	-0.8
1,708,469	-		LRK54_RS07830	0.32	-1.1
1,708,469	-		LRK54_RS07830	0.32	-1.8
1,708,469	-		LRK54_RS07830	0.32	-0.3
1,708,469	-		LRK54_RS07830	0.32	+0.3
1,708,469	-		LRK54_RS07830	0.32	-0.3
1,708,469	-		LRK54_RS07830	0.32	+1.3
1,708,469	-		LRK54_RS07830	0.32	-1.0
1,708,469	-		LRK54_RS07830	0.32	-0.3
1,708,469	-		LRK54_RS07830	0.32	-2.3
1,708,469	-		LRK54_RS07830	0.32	-0.8
1,708,469	-		LRK54_RS07830	0.32	-1.3
1,708,469	-		LRK54_RS07830	0.32	-0.1
1,708,469	-		LRK54_RS07830	0.32	-2.0
1,708,469	-		LRK54_RS07830	0.32	-1.6
1,708,469	-		LRK54_RS07830	0.32	+0.6
1,708,469	-		LRK54_RS07830	0.32	-2.0
1,708,469	-		LRK54_RS07830	0.32	+0.1
1,708,469	-		LRK54_RS07830	0.32	-1.0
1,708,469	-		LRK54_RS07830	0.32	-0.8
1,708,469	-		LRK54_RS07830	0.32	-0.8
1,708,469	-		LRK54_RS07830	0.32	-1.0
1,708,469	-		LRK54_RS07830	0.32	+1.5
1,708,469	-		LRK54_RS07830	0.32	+0.6
1,708,469	-		LRK54_RS07830	0.32	+0.9
1,708,469	-		LRK54_RS07830	0.32	-0.1
1,708,469	-		LRK54_RS07830	0.32	-0.5
1,708,507	+		LRK54_RS07830	0.34	-2.4
1,708,507	+		LRK54_RS07830	0.34	-1.5
1,708,507	+		LRK54_RS07830	0.34	-1.5
1,708,507	+		LRK54_RS07830	0.34	-1.0
1,708,507	+		LRK54_RS07830	0.34	+0.9
1,708,507	+		LRK54_RS07830	0.34	+0.5
1,708,507	+		LRK54_RS07830	0.34	+0.3
1,708,508	-		LRK54_RS07830	0.34	+0.1
1,708,508	-		LRK54_RS07830	0.34	-1.0
1,708,543	+		LRK54_RS07830	0.36	+0.9
1,708,543	+		LRK54_RS07830	0.36	+0.1
1,708,544	-		LRK54_RS07830	0.36	-0.3
1,708,544	-		LRK54_RS07830	0.36	-2.2
1,708,544	-		LRK54_RS07830	0.36	-0.5
1,708,642	+		LRK54_RS07830	0.41	-1.5
1,708,642	+		LRK54_RS07830	0.41	+2.3
1,708,642	+		LRK54_RS07830	0.41	-0.1
1,708,642	+		LRK54_RS07830	0.41	+1.3
1,708,642	+		LRK54_RS07830	0.41	-0.6
1,708,642	+		LRK54_RS07830	0.41	+0.1
1,708,642	+		LRK54_RS07830	0.41	-0.5
1,708,643	-		LRK54_RS07830	0.41	-1.5
1,708,643	-		LRK54_RS07830	0.41	-0.7
1,708,643	-		LRK54_RS07830	0.41	-0.7
1,708,651	+		LRK54_RS07830	0.42	-0.9
1,708,651	+		LRK54_RS07830	0.42	-0.9
1,708,651	+		LRK54_RS07830	0.42	-1.6
1,708,651	+		LRK54_RS07830	0.42	-1.1
1,708,652	-		LRK54_RS07830	0.42	-2.0
1,708,652	-		LRK54_RS07830	0.42	-1.2
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