Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS01680

Experiment: casaminos 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS01675 and LRK54_RS01680 are separated by 51 nucleotidesLRK54_RS01680 and LRK54_RS01685 overlap by 4 nucleotides LRK54_RS01675: LRK54_RS01675 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 357,148 to 358,017 _RS01675 LRK54_RS01680: LRK54_RS01680 - tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data), at 358,069 to 358,869 _RS01680 LRK54_RS01685: LRK54_RS01685 - tryptophan synthase subunit beta, at 358,866 to 360,077 _RS01685 Position (kb) 358 359Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 358.033 kb on - strandat 358.033 kb on - strandat 358.033 kb on - strandat 358.033 kb on - strandat 358.033 kb on - strandat 358.033 kb on - strandat 358.033 kb on - strandat 358.033 kb on - strandat 358.033 kb on - strandat 358.033 kb on - strandat 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.347 kb on - strand, within LRK54_RS01680at 358.349 kb on + strand, within LRK54_RS01680at 358.349 kb on + strand, within LRK54_RS01680at 358.350 kb on - strand, within LRK54_RS01680at 358.350 kb on - strand, within LRK54_RS01680at 358.350 kb on - strand, within LRK54_RS01680at 358.350 kb on - strand, within LRK54_RS01680at 358.350 kb on - strand, within LRK54_RS01680at 358.350 kb on - strand, within LRK54_RS01680at 358.350 kb on - strand, within LRK54_RS01680at 358.386 kb on + strand, within LRK54_RS01680at 358.386 kb on + strand, within LRK54_RS01680at 358.386 kb on + strand, within LRK54_RS01680at 358.387 kb on - strand, within LRK54_RS01680at 358.565 kb on + strand, within LRK54_RS01680at 358.565 kb on + strand, within LRK54_RS01680at 358.565 kb on + strand, within LRK54_RS01680at 358.565 kb on + strand, within LRK54_RS01680at 358.565 kb on + strand, within LRK54_RS01680at 358.566 kb on - strand, within LRK54_RS01680at 358.762 kb on + strand, within LRK54_RS01680at 358.763 kb on - strand, within LRK54_RS01680at 358.763 kb on - strand, within LRK54_RS01680at 358.869 kb on + strandat 358.869 kb on + strandat 358.869 kb on + strandat 358.869 kb on + strandat 358.869 kb on + strandat 358.869 kb on + strandat 358.870 kb on - strandat 358.870 kb on - strandat 358.870 kb on - strandat 358.870 kb on - strandat 358.870 kb on - strandat 358.870 kb on - strandat 358.870 kb on - strandat 358.870 kb on - strandat 358.870 kb on - strandat 358.870 kb on - strandat 359.080 kb on + strand, within LRK54_RS01685at 359.080 kb on + strand, within LRK54_RS01685at 359.080 kb on + strand, within LRK54_RS01685at 359.081 kb on - strand, within LRK54_RS01685at 359.081 kb on - strand, within LRK54_RS01685at 359.081 kb on - strand, within LRK54_RS01685at 359.081 kb on - strand, within LRK54_RS01685at 359.134 kb on + strand, within LRK54_RS01685at 359.134 kb on + strand, within LRK54_RS01685at 359.135 kb on - strand, within LRK54_RS01685at 359.135 kb on - strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.197 kb on + strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.198 kb on - strand, within LRK54_RS01685at 359.392 kb on + strand, within LRK54_RS01685at 359.392 kb on + strand, within LRK54_RS01685at 359.392 kb on + strand, within LRK54_RS01685at 359.392 kb on + strand, within LRK54_RS01685at 359.393 kb on - strand, within LRK54_RS01685at 359.393 kb on - strand, within LRK54_RS01685at 359.393 kb on - strand, within LRK54_RS01685at 359.393 kb on - strand, within LRK54_RS01685at 359.393 kb on - strand, within LRK54_RS01685at 359.462 kb on - strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.494 kb on + strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.495 kb on - strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.653 kb on + strand, within LRK54_RS01685at 359.654 kb on - strand, within LRK54_RS01685at 359.654 kb on - strand, within LRK54_RS01685at 359.654 kb on - strand, within LRK54_RS01685at 359.654 kb on - strand, within LRK54_RS01685at 359.654 kb on - strand, within LRK54_RS01685at 359.654 kb on - strand, within LRK54_RS01685at 359.654 kb on - strand, within LRK54_RS01685at 359.804 kb on + strand, within LRK54_RS01685at 359.805 kb on - strand, within LRK54_RS01685at 359.805 kb on - strand, within LRK54_RS01685

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos 2 mg/mL
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358,033 - -1.5
358,033 - -0.5
358,033 - -0.1
358,033 - +0.7
358,033 - +0.6
358,033 - -0.5
358,033 - -0.5
358,033 - -0.1
358,033 - -0.9
358,033 - -0.5
358,347 - LRK54_RS01680 0.35 -0.5
358,347 - LRK54_RS01680 0.35 -2.1
358,347 - LRK54_RS01680 0.35 -2.9
358,347 - LRK54_RS01680 0.35 +0.7
358,347 - LRK54_RS01680 0.35 -0.3
358,347 - LRK54_RS01680 0.35 -1.1
358,347 - LRK54_RS01680 0.35 -0.7
358,347 - LRK54_RS01680 0.35 -1.9
358,347 - LRK54_RS01680 0.35 -0.5
358,347 - LRK54_RS01680 0.35 -2.7
358,347 - LRK54_RS01680 0.35 -0.1
358,347 - LRK54_RS01680 0.35 -3.0
358,347 - LRK54_RS01680 0.35 -1.8
358,347 - LRK54_RS01680 0.35 -0.8
358,347 - LRK54_RS01680 0.35 -2.0
358,347 - LRK54_RS01680 0.35 +0.8
358,347 - LRK54_RS01680 0.35 -0.9
358,347 - LRK54_RS01680 0.35 -1.6
358,347 - LRK54_RS01680 0.35 +0.5
358,347 - LRK54_RS01680 0.35 -1.3
358,347 - LRK54_RS01680 0.35 -1.3
358,347 - LRK54_RS01680 0.35 -2.3
358,347 - LRK54_RS01680 0.35 -1.1
358,349 + LRK54_RS01680 0.35 +0.5
358,349 + LRK54_RS01680 0.35 -0.1
358,350 - LRK54_RS01680 0.35 +0.9
358,350 - LRK54_RS01680 0.35 -1.7
358,350 - LRK54_RS01680 0.35 -2.5
358,350 - LRK54_RS01680 0.35 -0.5
358,350 - LRK54_RS01680 0.35 -1.3
358,350 - LRK54_RS01680 0.35 -2.1
358,350 - LRK54_RS01680 0.35 +0.9
358,386 + LRK54_RS01680 0.40 -2.1
358,386 + LRK54_RS01680 0.40 -1.7
358,386 + LRK54_RS01680 0.40 -1.7
358,387 - LRK54_RS01680 0.40 -2.7
358,565 + LRK54_RS01680 0.62 -1.8
358,565 + LRK54_RS01680 0.62 +0.2
358,565 + LRK54_RS01680 0.62 -0.5
358,565 + LRK54_RS01680 0.62 -0.1
358,565 + LRK54_RS01680 0.62 -0.8
358,566 - LRK54_RS01680 0.62 -2.1
358,762 + LRK54_RS01680 0.87 -1.7
358,763 - LRK54_RS01680 0.87 -0.4
358,763 - LRK54_RS01680 0.87 -0.9
358,869 + +0.2
358,869 + -1.7
358,869 + -1.7
358,869 + +0.2
358,869 + -1.7
358,869 + -1.3
358,870 - +0.5
358,870 - -1.1
358,870 - +0.2
358,870 - -1.3
358,870 - -0.2
358,870 - -1.4
358,870 - +0.6
358,870 - +0.4
358,870 - -0.4
358,870 - +0.2
359,080 + LRK54_RS01685 0.18 -1.1
359,080 + LRK54_RS01685 0.18 -0.4
359,080 + LRK54_RS01685 0.18 +0.5
359,081 - LRK54_RS01685 0.18 -1.0
359,081 - LRK54_RS01685 0.18 -2.3
359,081 - LRK54_RS01685 0.18 -0.8
359,081 - LRK54_RS01685 0.18 -2.2
359,134 + LRK54_RS01685 0.22 -1.8
359,134 + LRK54_RS01685 0.22 -0.1
359,135 - LRK54_RS01685 0.22 -1.5
359,135 - LRK54_RS01685 0.22 -1.3
359,197 + LRK54_RS01685 0.27 -2.3
359,197 + LRK54_RS01685 0.27 +0.5
359,197 + LRK54_RS01685 0.27 -0.1
359,197 + LRK54_RS01685 0.27 -1.3
359,197 + LRK54_RS01685 0.27 -0.2
359,197 + LRK54_RS01685 0.27 -0.5
359,197 + LRK54_RS01685 0.27 +0.5
359,197 + LRK54_RS01685 0.27 +0.8
359,197 + LRK54_RS01685 0.27 -0.8
359,197 + LRK54_RS01685 0.27 -2.4
359,197 + LRK54_RS01685 0.27 -2.5
359,197 + LRK54_RS01685 0.27 -1.5
359,197 + LRK54_RS01685 0.27 -1.3
359,197 + LRK54_RS01685 0.27 -0.8
359,197 + LRK54_RS01685 0.27 -1.5
359,197 + LRK54_RS01685 0.27 -0.8
359,197 + LRK54_RS01685 0.27 -2.5
359,197 + LRK54_RS01685 0.27 -0.7
359,197 + LRK54_RS01685 0.27 -1.8
359,197 + LRK54_RS01685 0.27 -0.8
359,197 + LRK54_RS01685 0.27 -1.8
359,197 + LRK54_RS01685 0.27 -2.6
359,197 + LRK54_RS01685 0.27 -0.5
359,197 + LRK54_RS01685 0.27 +1.5
359,197 + LRK54_RS01685 0.27 -2.2
359,197 + LRK54_RS01685 0.27 -2.3
359,197 + LRK54_RS01685 0.27 +1.5
359,198 - LRK54_RS01685 0.27 +0.5
359,198 - LRK54_RS01685 0.27 +0.4
359,198 - LRK54_RS01685 0.27 -1.1
359,198 - LRK54_RS01685 0.27 -2.5
359,198 - LRK54_RS01685 0.27 -2.0
359,198 - LRK54_RS01685 0.27 -1.7
359,198 - LRK54_RS01685 0.27 -0.1
359,198 - LRK54_RS01685 0.27 +0.5
359,198 - LRK54_RS01685 0.27 -2.0
359,198 - LRK54_RS01685 0.27 +0.5
359,198 - LRK54_RS01685 0.27 -0.3
359,198 - LRK54_RS01685 0.27 -2.3
359,198 - LRK54_RS01685 0.27 -1.3
359,198 - LRK54_RS01685 0.27 -1.7
359,198 - LRK54_RS01685 0.27 +0.5
359,198 - LRK54_RS01685 0.27 -1.3
359,198 - LRK54_RS01685 0.27 -2.3
359,198 - LRK54_RS01685 0.27 -1.5
359,198 - LRK54_RS01685 0.27 -1.8
359,198 - LRK54_RS01685 0.27 -1.7
359,198 - LRK54_RS01685 0.27 -0.5
359,198 - LRK54_RS01685 0.27 -3.1
359,198 - LRK54_RS01685 0.27 -0.5
359,198 - LRK54_RS01685 0.27 -0.8
359,198 - LRK54_RS01685 0.27 -0.4
359,198 - LRK54_RS01685 0.27 -2.5
359,198 - LRK54_RS01685 0.27 +0.5
359,198 - LRK54_RS01685 0.27 -0.5
359,198 - LRK54_RS01685 0.27 -0.1
359,198 - LRK54_RS01685 0.27 -1.5
359,392 + LRK54_RS01685 0.43 -1.8
359,392 + LRK54_RS01685 0.43 -0.4
359,392 + LRK54_RS01685 0.43 -0.1
359,392 + LRK54_RS01685 0.43 -2.7
359,393 - LRK54_RS01685 0.43 +0.5
359,393 - LRK54_RS01685 0.43 +0.5
359,393 - LRK54_RS01685 0.43 -1.4
359,393 - LRK54_RS01685 0.43 -1.1
359,393 - LRK54_RS01685 0.43 -3.4
359,462 - LRK54_RS01685 0.49 -0.1
359,494 + LRK54_RS01685 0.52 -2.4
359,494 + LRK54_RS01685 0.52 -2.2
359,494 + LRK54_RS01685 0.52 -1.2
359,494 + LRK54_RS01685 0.52 -0.3
359,494 + LRK54_RS01685 0.52 -0.7
359,494 + LRK54_RS01685 0.52 -0.7
359,494 + LRK54_RS01685 0.52 -0.5
359,494 + LRK54_RS01685 0.52 -0.3
359,494 + LRK54_RS01685 0.52 -1.4
359,494 + LRK54_RS01685 0.52 -0.6
359,494 + LRK54_RS01685 0.52 -1.7
359,494 + LRK54_RS01685 0.52 -1.7
359,494 + LRK54_RS01685 0.52 -1.3
359,494 + LRK54_RS01685 0.52 -0.1
359,494 + LRK54_RS01685 0.52 -0.3
359,494 + LRK54_RS01685 0.52 +1.5
359,494 + LRK54_RS01685 0.52 -0.7
359,494 + LRK54_RS01685 0.52 -0.8
359,494 + LRK54_RS01685 0.52 -0.8
359,495 - LRK54_RS01685 0.52 -1.8
359,495 - LRK54_RS01685 0.52 -2.0
359,495 - LRK54_RS01685 0.52 -1.0
359,495 - LRK54_RS01685 0.52 -2.4
359,495 - LRK54_RS01685 0.52 -2.5
359,495 - LRK54_RS01685 0.52 +0.3
359,495 - LRK54_RS01685 0.52 -1.8
359,495 - LRK54_RS01685 0.52 -1.5
359,495 - LRK54_RS01685 0.52 -1.1
359,495 - LRK54_RS01685 0.52 -1.1
359,495 - LRK54_RS01685 0.52 -1.0
359,495 - LRK54_RS01685 0.52 -0.5
359,495 - LRK54_RS01685 0.52 -0.4
359,495 - LRK54_RS01685 0.52 -1.1
359,495 - LRK54_RS01685 0.52 +0.1
359,495 - LRK54_RS01685 0.52 -2.1
359,495 - LRK54_RS01685 0.52 -2.3
359,495 - LRK54_RS01685 0.52 -1.6
359,495 - LRK54_RS01685 0.52 -2.6
359,495 - LRK54_RS01685 0.52 -2.0
359,495 - LRK54_RS01685 0.52 -1.1
359,495 - LRK54_RS01685 0.52 -2.7
359,653 + LRK54_RS01685 0.65 -0.5
359,653 + LRK54_RS01685 0.65 -0.8
359,653 + LRK54_RS01685 0.65 -2.0
359,653 + LRK54_RS01685 0.65 -0.8
359,653 + LRK54_RS01685 0.65 -2.6
359,653 + LRK54_RS01685 0.65 -1.3
359,653 + LRK54_RS01685 0.65 +0.3
359,653 + LRK54_RS01685 0.65 -1.3
359,653 + LRK54_RS01685 0.65 +0.2
359,653 + LRK54_RS01685 0.65 +1.9
359,653 + LRK54_RS01685 0.65 -0.5
359,653 + LRK54_RS01685 0.65 -0.5
359,653 + LRK54_RS01685 0.65 -0.2
359,653 + LRK54_RS01685 0.65 -0.5
359,653 + LRK54_RS01685 0.65 -0.8
359,653 + LRK54_RS01685 0.65 -0.8
359,654 - LRK54_RS01685 0.65 -0.1
359,654 - LRK54_RS01685 0.65 -0.8
359,654 - LRK54_RS01685 0.65 +0.9
359,654 - LRK54_RS01685 0.65 -0.4
359,654 - LRK54_RS01685 0.65 +1.5
359,654 - LRK54_RS01685 0.65 -0.5
359,654 - LRK54_RS01685 0.65 -1.4
359,804 + LRK54_RS01685 0.77 -1.7
359,805 - LRK54_RS01685 0.77 -0.5
359,805 - LRK54_RS01685 0.77 +0.5

Or see this region's nucleotide sequence