Strain Fitness in Pantoea sp. MT58 around IAI47_13645

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,893,174	+		IAI47_13635	0.86	-2.2
2,893,174	+		IAI47_13635	0.86	-1.1
2,893,175	-		IAI47_13635	0.86	-2.5
2,893,175	-		IAI47_13635	0.86	-1.7
2,893,175	-		IAI47_13635	0.86	+0.9
2,893,175	-		IAI47_13635	0.86	+0.2
2,893,175	-		IAI47_13635	0.86	+0.5
2,893,177	+		IAI47_13635	0.87	-1.0
2,893,177	+		IAI47_13635	0.87	+3.6
2,893,177	+		IAI47_13635	0.87	+1.6
2,893,177	+		IAI47_13635	0.87	+0.6
2,893,178	-		IAI47_13635	0.87	+0.6
2,893,178	-		IAI47_13635	0.87	-0.6
2,893,234	+				-2.4
2,893,286	-				+0.4
2,893,286	-				+1.7
2,893,312	-				-3.1
2,893,312	-				-0.2
2,893,401	-				-1.4
2,893,628	+		IAI47_13640	0.34	-0.8
2,893,696	+		IAI47_13640	0.46	-1.0
2,893,810	+		IAI47_13640	0.67	+0.0
2,893,810	+		IAI47_13640	0.67	+0.2
2,893,810	+		IAI47_13640	0.67	-1.1
2,893,810	+		IAI47_13640	0.67	+1.6
2,893,810	+		IAI47_13640	0.67	-0.2
2,893,811	-		IAI47_13640	0.67	-1.1
2,893,811	-		IAI47_13640	0.67	-0.1
2,893,811	-		IAI47_13640	0.67	-0.1
2,893,964	+				+0.1
2,893,965	-				-1.7
2,893,965	-				-0.8
2,893,965	-				+0.5
2,893,965	-				+0.5
2,893,968	+				-0.5
2,893,968	+				+1.8
2,893,968	+				+0.6
2,893,968	+				-1.0
2,893,968	+				+0.2
2,893,968	+				+0.1
2,893,968	+				+2.0
2,893,968	+				+0.6
2,893,968	+				+1.3
2,893,969	-				+0.5
2,893,969	-				-1.4
2,893,969	-				-0.3
2,893,969	-				+1.8
2,893,969	-				+1.3
2,893,969	-				-1.6
2,893,969	-				+1.3
2,893,981	+				+1.3
2,893,981	+				+0.4
2,893,981	+				+0.0
2,893,982	-				-0.3
2,893,982	-				-1.0
2,893,982	-				+0.4
2,893,982	-				-0.7
2,893,982	-				-0.6
2,893,982	-				+2.6
2,893,984	+				+1.6
2,893,984	+				-1.2
2,893,984	+				+0.8
2,893,984	+				-2.6
2,893,984	+				-0.7
2,893,984	+				-1.2
2,893,984	+				+1.8
2,893,984	+				+0.0
2,893,984	+				+1.1
2,893,984	+				+0.0
2,893,985	-				-1.8
2,893,985	-				-2.2
2,893,985	-				-0.8
2,893,985	-				-0.6
2,893,985	-				+3.4
2,893,991	+				+1.3
2,893,991	+				-0.1
2,893,991	+				+1.5
2,893,991	+				-0.5
2,893,992	-				+1.4
2,893,992	-				+2.0
2,893,992	-				-1.6
2,894,065	+				+1.4
2,894,065	+				-0.5
2,894,065	+				-1.0
2,894,065	+				-1.1
2,894,065	+				+1.4
2,894,067	+				+0.3
2,894,067	+				+0.5
2,894,068	-				+1.5
2,894,117	+				-0.8
2,894,117	+				+0.4
2,894,117	+				+0.0
2,894,117	+				-2.1
2,894,118	-				+0.5
2,894,128	+				+0.4
2,894,128	+				+1.6
2,894,129	-				-0.4
2,894,129	-				+1.2
2,894,129	-				-2.4
2,894,132	+				-1.0
2,894,169	-				-0.1
2,894,236	+				-0.1
2,894,240	+				+0.8
2,894,240	+				-0.7
2,894,240	+				+0.0
2,894,240	+				-1.0
2,894,240	+				-0.5
2,894,240	+				+1.6
2,894,240	+				-1.0
2,894,240	+				+1.8
2,894,240	+				-1.8
2,894,240	+				-2.1
2,894,241	-				-0.1
2,894,241	-				-1.1
2,894,241	-				+0.0
2,894,241	-				-0.8
2,894,241	-				+1.1
2,894,241	-				+1.3
2,894,241	-				+0.8
2,894,241	-				-0.1
2,894,241	-				-0.7
2,894,241	-				-0.4
2,894,241	-				+1.3
2,894,241	-				-1.0
2,894,241	-				+0.3
2,894,241	-				+1.6
2,894,241	-				-0.9
2,894,241	-				+0.2
2,894,503	+		IAI47_13645	0.24	+0.3
2,894,615	+		IAI47_13645	0.32	+0.6
2,894,615	+		IAI47_13645	0.32	-1.4
2,894,647	+		IAI47_13645	0.34	-1.4
2,894,647	+		IAI47_13645	0.34	+0.2
2,894,648	-		IAI47_13645	0.34	-1.3
2,894,648	-		IAI47_13645	0.34	+1.1
2,894,648	-		IAI47_13645	0.34	+0.6
2,894,648	-		IAI47_13645	0.34	+1.8
2,894,756	+		IAI47_13645	0.41	-2.5
2,894,768	+		IAI47_13645	0.42	-1.9
2,895,011	-		IAI47_13645	0.59	+1.6
2,895,118	+		IAI47_13645	0.66	+2.4
2,895,118	+		IAI47_13645	0.66	+1.2
2,895,118	+		IAI47_13645	0.66	+0.1
2,895,118	+		IAI47_13645	0.66	+0.1
2,895,118	+		IAI47_13645	0.66	-1.6
2,895,119	-		IAI47_13645	0.66	-0.9
2,895,119	-		IAI47_13645	0.66	-1.3
2,895,431	+		IAI47_13645	0.87	-1.6
2,895,431	+		IAI47_13645	0.87	+1.0
2,895,431	+		IAI47_13645	0.87	-0.4
2,895,431	+		IAI47_13645	0.87	-1.3
2,895,432	-		IAI47_13645	0.87	+3.6
2,895,432	-		IAI47_13645	0.87	-1.0
2,895,432	-		IAI47_13645	0.87	+1.0
2,895,432	-		IAI47_13645	0.87	-0.8
2,895,432	-		IAI47_13645	0.87	+0.0
2,895,432	-		IAI47_13645	0.87	+2.1
2,895,433	+		IAI47_13645	0.87	-2.3
2,895,433	+		IAI47_13645	0.87	+0.9
2,895,434	-		IAI47_13645	0.87	-0.6
2,895,434	-		IAI47_13645	0.87	-0.1
2,895,434	-		IAI47_13645	0.87	-1.2
2,895,493	+				-0.8
2,895,493	+				+0.9
2,895,493	+				+1.0
2,895,494	-				-1.2
2,895,494	-				-1.5
2,895,496	+				-0.4
2,895,497	-				+0.6
2,895,497	-				-0.8
2,895,497	-				-2.1
2,895,497	-				+0.2
2,895,497	-				-2.1
2,895,517	+				+0.1
2,895,517	+				-1.9
2,895,517	+				+0.8
2,895,517	+				-1.4
2,895,518	-				+0.8
2,895,518	-				+0.7
2,895,518	-				-1.0
2,895,563	+				-0.1
2,895,563	+				+0.9
2,895,563	+				+1.5
2,895,563	+				-0.2
2,895,563	+				+0.5
2,895,563	+				+1.6
2,895,563	+				+2.3
2,895,564	-				+0.0
2,895,564	-				+2.2
2,895,564	-				+0.0
2,895,564	-				-0.4
2,895,564	-				-0.3
2,895,577	+				-0.6
2,895,577	+				-2.0
2,895,577	+				-3.0
2,895,577	+				+2.9
2,895,577	+				+0.6
2,895,578	-				-0.5
2,895,578	-				-1.2
2,895,578	-				+0.3
2,895,578	-				+1.3
2,895,578	-				+0.5
2,895,578	-				+0.6
2,895,630	+				-1.7
2,895,630	+				-1.7
2,895,630	+				-1.4
2,895,630	+				-0.2
2,895,630	+				+1.1
2,895,631	-				-1.3
2,895,646	-				-1.4
2,895,683	+				+1.6
2,895,744	+				-2.2
2,895,744	+				-1.4
2,895,745	-				+0.2
2,895,745	-				+1.8
2,895,747	+				+1.8
2,895,747	+				+0.0
2,895,747	+				+1.3
2,895,747	+				-0.7
2,895,747	+				+0.6
2,895,748	-				-0.5
2,895,748	-				+0.3
2,895,748	-				-0.7
2,895,748	-				-2.3
2,895,748	-				+1.6
2,895,757	+				+0.3
2,895,757	+				+1.0
2,895,758	-				+0.4
2,895,758	-				+2.1
2,895,887	+				-2.4
2,895,887	+				-0.0
2,895,913	+				-0.8
2,895,913	+				-1.8
2,895,913	+				-0.1
2,895,914	-				+0.5
2,895,914	-				+1.0
2,895,914	-				+0.3
2,895,914	-				+0.3
2,895,918	+				-0.2
2,895,918	+				-2.2
2,895,918	+				+1.2
2,895,918	+				-0.5
2,895,918	+				+1.8
2,895,918	+				-0.4
2,895,918	+				-0.6
2,895,918	+				+1.6
2,895,918	+				+0.8
2,895,918	+				+1.4
2,895,918	+				+1.6
2,895,918	+				-0.1
2,895,918	+				+0.6
2,895,918	+				-2.0
2,895,918	+				+0.3
2,895,918	+				-1.0
2,895,918	+				-0.1
2,895,918	+				-0.8
2,895,918	+				-0.2
2,895,918	+				+1.2
2,895,918	+				-0.4
2,895,918	+				-2.6
2,895,918	+				+0.6
2,895,918	+				-1.9
2,895,918	+				-0.7
2,895,918	+				-1.7
2,895,919	-				+1.5
2,895,919	-				-0.1
2,895,919	-				+1.2
2,895,919	-				-3.2
2,895,919	-				+0.9
2,895,919	-				+1.7
2,895,919	-				-1.2
2,895,919	-				-2.0
2,895,919	-				+1.0
2,895,919	-				+0.3
2,895,919	-				-2.6
2,895,919	-				-2.2
2,895,919	-				-0.0
2,895,919	-				+0.5
2,895,919	-				+0.4
2,895,919	-				-0.8
2,895,919	-				-0.3
2,895,919	-				-1.3
2,895,919	-				+1.7
2,895,919	-				-0.1
2,895,919	-				+2.3
2,895,919	-				-0.1
2,895,919	-				+0.5
2,895,919	-				+0.2
2,895,920	+				-0.7
2,895,921	-				-0.7
2,895,921	-				+1.2
2,895,921	-				+2.6
2,895,921	-				-0.4
2,895,921	-				+1.6
2,895,921	-				-2.6
2,895,949	+				+3.6
2,895,949	+				+0.1
2,895,949	+				-0.3
2,895,949	+				-0.9
2,895,950	-				-2.3
2,895,950	-				+0.2
2,895,953	+				+1.1
2,895,953	+				-0.1
2,895,953	+				+0.3
2,895,953	+				-1.1
2,895,953	+				-0.3
2,895,953	+				-2.6
2,895,954	-				+0.5
2,895,954	-				+2.6
2,895,954	-				+0.0
2,895,957	+				-0.6
2,895,957	+				+1.0
2,895,957	+				+0.2
2,895,958	-				-1.5
2,895,958	-				-1.0
2,895,958	-				-1.0
2,895,958	-				-0.3
2,895,958	-				-3.1
2,895,999	+				+0.0
2,895,999	+				+2.0
2,896,000	-				-0.3
2,896,000	-				+0.7
2,896,000	-				-0.9
2,896,058	-				+0.7
2,896,122	+				-1.1
2,896,123	-				-0.4
2,896,123	-				+1.6
2,896,173	+				+0.9
2,896,173	+				-0.5
2,896,174	-				+1.6
2,896,174	-				+2.3
2,896,174	-				-2.9
2,896,441	+				-2.1
2,896,441	+				-2.0
2,896,442	-				-0.8
2,896,442	-				-1.4
2,896,473	-				-0.3
2,896,473	-				+0.3
2,896,473	-				-1.1
2,896,473	-				-2.9
2,896,473	-				+1.9
2,896,473	-				+0.1
2,896,473	-				+1.9
2,896,544	+		IAI47_13665	0.88	+0.0
2,896,557	+				-1.4
2,896,557	+				-1.1
2,896,558	-				-0.9
2,896,558	-				-2.2
2,896,558	-				+0.6
2,896,558	-				-0.3
2,896,558	-				+0.5
2,896,558	-				-1.0
2,896,558	-				+0.6
2,896,558	-				-1.3