Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04455 and IAI47_04460 are separated by 74 nucleotides IAI47_04460 and IAI47_04465 are separated by 276 nucleotides IAI47_04465 and IAI47_04470 are separated by 348 nucleotides
IAI47_04455: IAI47_04455 - 23S ribosomal RNA, at 933,950 to 936,884
_04455
IAI47_04460: IAI47_04460 - 5S ribosomal RNA, at 936,959 to 937,074
_04460
IAI47_04465: IAI47_04465 - MFS transporter, at 937,351 to 938,640
_04465
IAI47_04470: IAI47_04470 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 938,989 to 940,344
_04470
Position (kb) 937
938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 936.916 kb on + strand at 936.916 kb on + strand at 936.918 kb on + strand at 936.918 kb on + strand at 936.918 kb on + strand at 936.918 kb on + strand at 936.918 kb on + strand at 936.932 kb on + strand at 937.119 kb on + strand at 937.137 kb on + strand at 937.138 kb on - strand at 937.237 kb on - strand at 937.256 kb on - strand at 937.256 kb on - strand at 937.279 kb on + strand at 937.280 kb on - strand at 937.295 kb on - strand at 937.295 kb on - strand at 937.295 kb on - strand at 937.295 kb on - strand at 937.303 kb on + strand at 937.303 kb on + strand at 937.304 kb on - strand at 937.316 kb on - strand at 937.345 kb on + strand at 937.345 kb on + strand at 937.345 kb on + strand at 937.346 kb on - strand at 937.346 kb on - strand at 937.346 kb on - strand at 937.365 kb on + strand at 937.366 kb on - strand at 937.366 kb on - strand at 937.368 kb on + strand at 937.368 kb on + strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.369 kb on - strand at 937.387 kb on - strand at 937.387 kb on - strand at 937.398 kb on + strand at 937.398 kb on + strand at 937.398 kb on + strand at 937.399 kb on - strand at 937.399 kb on - strand at 937.399 kb on - strand at 937.399 kb on - strand at 937.399 kb on - strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.453 kb on + strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.454 kb on - strand at 937.459 kb on + strand at 937.459 kb on + strand at 937.459 kb on + strand at 937.459 kb on + strand at 937.459 kb on + strand at 937.460 kb on - strand at 937.460 kb on - strand at 937.460 kb on - strand at 937.460 kb on - strand at 937.460 kb on - strand at 937.477 kb on + strand at 937.477 kb on + strand at 937.477 kb on + strand at 937.478 kb on - strand at 937.523 kb on + strand, within IAI47_04465 at 937.523 kb on + strand, within IAI47_04465 at 937.524 kb on - strand, within IAI47_04465 at 937.559 kb on + strand, within IAI47_04465 at 937.583 kb on + strand, within IAI47_04465 at 937.584 kb on - strand, within IAI47_04465 at 937.591 kb on + strand, within IAI47_04465 at 937.591 kb on + strand, within IAI47_04465 at 937.591 kb on + strand, within IAI47_04465 at 937.594 kb on - strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.641 kb on + strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.642 kb on - strand, within IAI47_04465 at 937.685 kb on - strand, within IAI47_04465 at 937.731 kb on + strand, within IAI47_04465 at 937.731 kb on + strand, within IAI47_04465 at 937.745 kb on + strand, within IAI47_04465 at 937.762 kb on + strand, within IAI47_04465 at 937.762 kb on + strand, within IAI47_04465 at 937.763 kb on - strand, within IAI47_04465 at 937.763 kb on - strand, within IAI47_04465 at 937.763 kb on - strand, within IAI47_04465 at 937.763 kb on - strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.780 kb on + strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.781 kb on - strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.819 kb on + strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.820 kb on - strand, within IAI47_04465 at 937.834 kb on + strand, within IAI47_04465 at 937.973 kb on + strand, within IAI47_04465 at 937.973 kb on + strand, within IAI47_04465 at 937.974 kb on - strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.008 kb on - strand, within IAI47_04465 at 938.008 kb on - strand, within IAI47_04465 at 938.051 kb on + strand, within IAI47_04465 at 938.065 kb on - strand, within IAI47_04465 at 938.119 kb on + strand, within IAI47_04465 at 938.119 kb on + strand, within IAI47_04465 at 938.120 kb on - strand, within IAI47_04465 at 938.120 kb on - strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.147 kb on - strand, within IAI47_04465 at 938.155 kb on - strand, within IAI47_04465 at 938.234 kb on + strand, within IAI47_04465 at 938.234 kb on + strand, within IAI47_04465 at 938.235 kb on - strand, within IAI47_04465 at 938.253 kb on + strand, within IAI47_04465 at 938.303 kb on + strand, within IAI47_04465 at 938.303 kb on + strand, within IAI47_04465 at 938.304 kb on - strand, within IAI47_04465 at 938.304 kb on - strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.312 kb on + strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.354 kb on + strand, within IAI47_04465 at 938.355 kb on - strand, within IAI47_04465 at 938.355 kb on - strand, within IAI47_04465 at 938.366 kb on + strand, within IAI47_04465 at 938.366 kb on + strand, within IAI47_04465 at 938.367 kb on - strand, within IAI47_04465 at 938.367 kb on - strand, within IAI47_04465 at 938.389 kb on - strand, within IAI47_04465 at 938.389 kb on - strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.399 kb on - strand, within IAI47_04465 at 938.399 kb on - strand, within IAI47_04465 at 938.421 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.564 kb on - strand at 938.631 kb on + strand at 938.632 kb on - strand at 938.632 kb on - strand at 938.638 kb on + strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.769 kb on - strand at 938.769 kb on - strand at 938.772 kb on + strand at 938.773 kb on - strand at 938.773 kb on - strand at 938.793 kb on - strand at 938.793 kb on - strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.838 kb on - strand at 938.838 kb on - strand at 938.838 kb on - strand at 938.915 kb on + strand at 938.916 kb on - strand at 938.963 kb on - strand at 938.975 kb on + strand at 938.975 kb on + strand at 938.976 kb on - strand at 938.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 936,916 + -2.1 936,916 + +1.1 936,918 + -0.4 936,918 + -1.0 936,918 + -0.4 936,918 + -0.3 936,918 + +1.0 936,932 + -0.0 937,119 + -1.6 937,137 + -0.8 937,138 - -1.4 937,237 - -2.5 937,256 - +1.3 937,256 - +0.5 937,279 + -0.3 937,280 - -2.4 937,295 - -0.9 937,295 - +1.3 937,295 - +1.3 937,295 - -2.6 937,303 + -0.9 937,303 + +0.7 937,304 - +0.6 937,316 - -2.1 937,345 + -1.9 937,345 + -0.2 937,345 + +1.5 937,346 - +0.7 937,346 - -0.9 937,346 - +1.1 937,365 + -1.1 937,366 - -1.5 937,366 - -0.8 937,368 + -0.9 937,368 + +2.5 937,369 - -1.1 937,369 - -0.5 937,369 - +1.3 937,369 - -1.6 937,369 - +1.3 937,369 - +1.7 937,387 - +0.6 937,387 - -1.6 937,398 + -2.6 937,398 + +0.7 937,398 + -0.3 937,399 - -1.0 937,399 - +1.3 937,399 - +1.0 937,399 - -0.3 937,399 - -1.0 937,453 + -0.1 937,453 + +0.7 937,453 + -0.3 937,453 + -0.1 937,453 + +2.1 937,453 + -2.8 937,453 + +0.8 937,453 + +1.5 937,453 + +0.0 937,453 + +1.1 937,453 + -3.5 937,453 + -0.2 937,454 - +1.3 937,454 - -2.6 937,454 - -1.5 937,454 - -0.3 937,454 - +2.5 937,454 - -1.4 937,454 - +0.8 937,454 - -0.3 937,454 - -3.1 937,454 - +0.2 937,454 - -3.0 937,454 - +1.2 937,454 - -2.5 937,454 - +2.3 937,454 - -0.3 937,454 - -0.8 937,454 - +1.1 937,454 - +0.7 937,454 - +1.6 937,459 + -2.3 937,459 + -1.1 937,459 + -3.0 937,459 + +1.4 937,459 + -3.1 937,460 - +2.0 937,460 - +1.7 937,460 - +0.4 937,460 - +0.9 937,460 - -1.8 937,477 + +1.5 937,477 + -2.3 937,477 + -2.6 937,478 - -3.4 937,523 + IAI47_04465 0.13 -0.9 937,523 + IAI47_04465 0.13 -0.2 937,524 - IAI47_04465 0.13 +0.7 937,559 + IAI47_04465 0.16 +0.7 937,583 + IAI47_04465 0.18 -2.3 937,584 - IAI47_04465 0.18 -2.2 937,591 + IAI47_04465 0.19 +0.9 937,591 + IAI47_04465 0.19 -0.5 937,591 + IAI47_04465 0.19 -0.3 937,594 - IAI47_04465 0.19 +1.5 937,641 + IAI47_04465 0.22 +1.4 937,641 + IAI47_04465 0.22 +0.3 937,641 + IAI47_04465 0.22 -0.6 937,641 + IAI47_04465 0.22 -0.8 937,641 + IAI47_04465 0.22 -1.2 937,641 + IAI47_04465 0.22 +0.1 937,641 + IAI47_04465 0.22 -1.8 937,642 - IAI47_04465 0.23 +0.2 937,642 - IAI47_04465 0.23 -0.6 937,642 - IAI47_04465 0.23 +0.8 937,642 - IAI47_04465 0.23 +0.8 937,642 - IAI47_04465 0.23 -2.0 937,642 - IAI47_04465 0.23 -0.3 937,642 - IAI47_04465 0.23 +0.2 937,642 - IAI47_04465 0.23 +0.9 937,642 - IAI47_04465 0.23 +1.2 937,685 - IAI47_04465 0.26 -0.3 937,731 + IAI47_04465 0.29 +0.7 937,731 + IAI47_04465 0.29 -3.1 937,745 + IAI47_04465 0.31 +0.7 937,762 + IAI47_04465 0.32 +1.3 937,762 + IAI47_04465 0.32 +1.0 937,763 - IAI47_04465 0.32 -0.3 937,763 - IAI47_04465 0.32 -1.5 937,763 - IAI47_04465 0.32 -2.4 937,763 - IAI47_04465 0.32 +0.5 937,780 + IAI47_04465 0.33 +1.2 937,780 + IAI47_04465 0.33 -0.2 937,780 + IAI47_04465 0.33 +1.8 937,780 + IAI47_04465 0.33 +0.7 937,780 + IAI47_04465 0.33 -0.6 937,780 + IAI47_04465 0.33 -1.8 937,780 + IAI47_04465 0.33 -1.9 937,780 + IAI47_04465 0.33 -0.1 937,780 + IAI47_04465 0.33 -1.1 937,780 + IAI47_04465 0.33 -2.7 937,781 - IAI47_04465 0.33 -1.1 937,781 - IAI47_04465 0.33 -0.3 937,781 - IAI47_04465 0.33 +0.7 937,781 - IAI47_04465 0.33 +1.0 937,781 - IAI47_04465 0.33 -0.6 937,781 - IAI47_04465 0.33 -2.2 937,781 - IAI47_04465 0.33 -2.0 937,781 - IAI47_04465 0.33 +0.9 937,819 + IAI47_04465 0.36 -2.1 937,819 + IAI47_04465 0.36 -0.2 937,819 + IAI47_04465 0.36 +2.1 937,819 + IAI47_04465 0.36 -2.1 937,819 + IAI47_04465 0.36 +0.5 937,819 + IAI47_04465 0.36 +0.0 937,819 + IAI47_04465 0.36 +0.2 937,819 + IAI47_04465 0.36 -2.7 937,819 + IAI47_04465 0.36 +1.5 937,820 - IAI47_04465 0.36 +0.0 937,820 - IAI47_04465 0.36 -1.8 937,820 - IAI47_04465 0.36 -0.1 937,820 - IAI47_04465 0.36 +1.0 937,820 - IAI47_04465 0.36 -0.6 937,820 - IAI47_04465 0.36 +0.9 937,834 + IAI47_04465 0.37 +1.4 937,973 + IAI47_04465 0.48 -0.0 937,973 + IAI47_04465 0.48 +1.0 937,974 - IAI47_04465 0.48 -0.9 938,007 + IAI47_04465 0.51 +1.3 938,007 + IAI47_04465 0.51 +0.4 938,007 + IAI47_04465 0.51 -1.5 938,008 - IAI47_04465 0.51 +0.3 938,008 - IAI47_04465 0.51 -1.1 938,051 + IAI47_04465 0.54 -2.2 938,065 - IAI47_04465 0.55 -1.7 938,119 + IAI47_04465 0.60 +1.3 938,119 + IAI47_04465 0.60 -1.4 938,120 - 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Or see this region's nucleotide sequence