Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4079

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4078 and Ga0059261_4079 are separated by 244 nucleotidesGa0059261_4079 and Ga0059261_4080 are separated by 290 nucleotides Ga0059261_4078: Ga0059261_4078 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 4,210,305 to 4,211,108 _4078 Ga0059261_4079: Ga0059261_4079 - hypothetical protein, at 4,211,353 to 4,213,377 _4079 Ga0059261_4080: Ga0059261_4080 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 4,213,668 to 4,214,369 _4080 Position (kb) 4211 4212 4213 4214Strain fitness (log2 ratio) -2 -1 0 1at 4210.414 kb on + strand, within Ga0059261_4078at 4210.414 kb on + strand, within Ga0059261_4078at 4210.414 kb on + strand, within Ga0059261_4078at 4210.414 kb on + strand, within Ga0059261_4078at 4210.415 kb on - strand, within Ga0059261_4078at 4210.415 kb on - strand, within Ga0059261_4078at 4210.628 kb on - strand, within Ga0059261_4078at 4210.628 kb on - strand, within Ga0059261_4078at 4210.801 kb on + strand, within Ga0059261_4078at 4210.802 kb on - strand, within Ga0059261_4078at 4210.955 kb on + strand, within Ga0059261_4078at 4210.956 kb on - strand, within Ga0059261_4078at 4210.987 kb on + strand, within Ga0059261_4078at 4210.987 kb on + strand, within Ga0059261_4078at 4210.987 kb on + strand, within Ga0059261_4078at 4210.987 kb on + strand, within Ga0059261_4078at 4210.988 kb on - strand, within Ga0059261_4078at 4210.988 kb on - strand, within Ga0059261_4078at 4210.988 kb on - strand, within Ga0059261_4078at 4210.988 kb on - strand, within Ga0059261_4078at 4210.988 kb on - strand, within Ga0059261_4078at 4211.075 kb on + strandat 4211.075 kb on + strandat 4211.075 kb on + strandat 4211.075 kb on + strandat 4211.075 kb on + strandat 4211.075 kb on + strandat 4211.075 kb on + strandat 4211.076 kb on - strandat 4211.122 kb on - strandat 4211.150 kb on + strandat 4211.191 kb on - strandat 4211.194 kb on + strandat 4211.205 kb on - strandat 4211.229 kb on + strandat 4211.376 kb on + strandat 4211.376 kb on + strandat 4211.376 kb on + strandat 4211.376 kb on + strandat 4211.377 kb on - strandat 4211.377 kb on - strandat 4211.377 kb on - strandat 4211.377 kb on - strandat 4211.377 kb on - strandat 4211.377 kb on - strandat 4211.377 kb on - strandat 4211.378 kb on + strandat 4211.378 kb on + strandat 4211.417 kb on + strandat 4211.417 kb on + strandat 4211.417 kb on + strandat 4211.418 kb on - strandat 4211.418 kb on - strandat 4211.420 kb on + strandat 4211.420 kb on + strandat 4211.420 kb on + strandat 4211.453 kb on + strandat 4211.454 kb on - strandat 4211.454 kb on - strandat 4211.467 kb on - strandat 4211.467 kb on - strandat 4211.467 kb on - strandat 4211.651 kb on + strand, within Ga0059261_4079at 4211.651 kb on + strand, within Ga0059261_4079at 4211.652 kb on - strand, within Ga0059261_4079at 4211.652 kb on - strand, within Ga0059261_4079at 4211.652 kb on - strandat 4211.687 kb on + strand, within Ga0059261_4079at 4211.687 kb on + strand, within Ga0059261_4079at 4211.687 kb on + strand, within Ga0059261_4079at 4211.687 kb on + strand, within Ga0059261_4079at 4211.687 kb on + strand, within Ga0059261_4079at 4211.687 kb on + strand, within Ga0059261_4079at 4211.687 kb on + strand, within Ga0059261_4079at 4211.687 kb on + strand, within Ga0059261_4079at 4211.687 kb on + strand, within Ga0059261_4079at 4211.687 kb on + strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4211.688 kb on - strand, within Ga0059261_4079at 4212.056 kb on + strand, within Ga0059261_4079at 4212.057 kb on - strand, within Ga0059261_4079at 4212.071 kb on + strand, within Ga0059261_4079at 4212.071 kb on + strand, within Ga0059261_4079at 4212.071 kb on + strand, within Ga0059261_4079at 4212.072 kb on - strand, within Ga0059261_4079at 4212.072 kb on - strand, within Ga0059261_4079at 4212.072 kb on - strand, within Ga0059261_4079at 4212.092 kb on + strand, within Ga0059261_4079at 4212.110 kb on + strand, within Ga0059261_4079at 4212.110 kb on + strand, within Ga0059261_4079at 4212.110 kb on + strand, within Ga0059261_4079at 4212.110 kb on + strand, within Ga0059261_4079at 4212.110 kb on + strand, within Ga0059261_4079at 4212.111 kb on - strand, within Ga0059261_4079at 4212.111 kb on - strand, within Ga0059261_4079at 4212.125 kb on + strand, within Ga0059261_4079at 4212.125 kb on + strand, within Ga0059261_4079at 4212.125 kb on + strand, within Ga0059261_4079at 4212.125 kb on + strand, within Ga0059261_4079at 4212.125 kb on + strand, within Ga0059261_4079at 4212.125 kb on + strand, within Ga0059261_4079at 4212.125 kb on + strand, within Ga0059261_4079at 4212.125 kb on + strand, within Ga0059261_4079at 4212.126 kb on - strand, within Ga0059261_4079at 4212.126 kb on - strand, within Ga0059261_4079at 4212.126 kb on - strand, within Ga0059261_4079at 4212.126 kb on - strand, within Ga0059261_4079at 4212.126 kb on - strand, within Ga0059261_4079at 4212.126 kb on - strand, within Ga0059261_4079at 4212.126 kb on - strand, within Ga0059261_4079at 4212.126 kb on - strand, within Ga0059261_4079at 4212.135 kb on - strand, within Ga0059261_4079at 4212.135 kb on - strand, within Ga0059261_4079at 4212.185 kb on + strand, within Ga0059261_4079at 4212.185 kb on + strand, within Ga0059261_4079at 4212.185 kb on + strand, within Ga0059261_4079at 4212.185 kb on + strand, within Ga0059261_4079at 4212.186 kb on - strand, within Ga0059261_4079at 4212.186 kb on - strand, within Ga0059261_4079at 4212.614 kb on + strand, within Ga0059261_4079at 4212.614 kb on + strand, within Ga0059261_4079at 4212.614 kb on + strand, within Ga0059261_4079at 4212.615 kb on - strand, within Ga0059261_4079at 4212.615 kb on - strand, within Ga0059261_4079at 4212.615 kb on - strand, within Ga0059261_4079at 4212.615 kb on - strand, within Ga0059261_4079at 4212.615 kb on - strand, within Ga0059261_4079at 4212.615 kb on - strand, within Ga0059261_4079at 4212.615 kb on - strand, within Ga0059261_4079at 4212.615 kb on - strand, within Ga0059261_4079at 4212.615 kb on - strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.668 kb on + strand, within Ga0059261_4079at 4212.669 kb on - strand, within Ga0059261_4079at 4212.669 kb on - strand, within Ga0059261_4079at 4212.669 kb on - strand, within Ga0059261_4079at 4212.669 kb on - strand, within Ga0059261_4079at 4212.669 kb on - strand, within Ga0059261_4079at 4212.738 kb on - strand, within Ga0059261_4079at 4212.738 kb on - strand, within Ga0059261_4079at 4212.764 kb on + strand, within Ga0059261_4079at 4212.764 kb on + strand, within Ga0059261_4079at 4212.764 kb on + strand, within Ga0059261_4079at 4212.764 kb on + strand, within Ga0059261_4079at 4212.764 kb on + strand, within Ga0059261_4079at 4212.765 kb on - strandat 4212.765 kb on - strand, within Ga0059261_4079at 4212.765 kb on - strand, within Ga0059261_4079at 4212.765 kb on - strand, within Ga0059261_4079at 4212.765 kb on - strand, within Ga0059261_4079at 4212.765 kb on - strand, within Ga0059261_4079at 4212.781 kb on + strand, within Ga0059261_4079at 4212.846 kb on + strand, within Ga0059261_4079at 4212.846 kb on + strand, within Ga0059261_4079at 4212.847 kb on - strand, within Ga0059261_4079at 4212.847 kb on - strand, within Ga0059261_4079at 4212.847 kb on - strand, within Ga0059261_4079at 4212.847 kb on - strand, within Ga0059261_4079at 4212.857 kb on + strand, within Ga0059261_4079at 4212.857 kb on + strand, within Ga0059261_4079at 4212.857 kb on + strand, within Ga0059261_4079at 4212.858 kb on - strand, within Ga0059261_4079at 4212.858 kb on - strand, within Ga0059261_4079at 4212.858 kb on - strand, within Ga0059261_4079at 4212.858 kb on - strand, within Ga0059261_4079at 4213.281 kb on + strandat 4213.282 kb on - strandat 4213.473 kb on + strandat 4213.590 kb on - strandat 4213.632 kb on + strandat 4213.752 kb on + strand, within Ga0059261_4080at 4213.927 kb on + strand, within Ga0059261_4080at 4213.927 kb on + strand, within Ga0059261_4080at 4213.928 kb on - strand, within Ga0059261_4080at 4213.928 kb on - strand, within Ga0059261_4080at 4213.928 kb on - strand, within Ga0059261_4080at 4214.105 kb on + strand, within Ga0059261_4080at 4214.105 kb on + strand, within Ga0059261_4080at 4214.105 kb on + strand, within Ga0059261_4080at 4214.105 kb on + strand, within Ga0059261_4080at 4214.106 kb on - strand, within Ga0059261_4080at 4214.232 kb on - strand, within Ga0059261_4080

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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4,210,414 + Ga0059261_4078 0.14 -0.0
4,210,414 + Ga0059261_4078 0.14 -0.7
4,210,414 + Ga0059261_4078 0.14 -0.4
4,210,414 + Ga0059261_4078 0.14 -0.2
4,210,415 - Ga0059261_4078 0.14 -0.2
4,210,415 - Ga0059261_4078 0.14 -0.2
4,210,628 - Ga0059261_4078 0.40 -0.3
4,210,628 - Ga0059261_4078 0.40 +0.0
4,210,801 + Ga0059261_4078 0.62 -0.1
4,210,802 - Ga0059261_4078 0.62 -1.4
4,210,955 + Ga0059261_4078 0.81 -0.1
4,210,956 - Ga0059261_4078 0.81 +0.2
4,210,987 + Ga0059261_4078 0.85 +0.7
4,210,987 + Ga0059261_4078 0.85 -0.3
4,210,987 + Ga0059261_4078 0.85 -1.4
4,210,987 + Ga0059261_4078 0.85 -0.1
4,210,988 - Ga0059261_4078 0.85 -1.0
4,210,988 - Ga0059261_4078 0.85 +0.5
4,210,988 - Ga0059261_4078 0.85 +0.8
4,210,988 - Ga0059261_4078 0.85 -1.0
4,210,988 - Ga0059261_4078 0.85 +1.4
4,211,075 + -0.6
4,211,075 + -0.6
4,211,075 + +0.0
4,211,075 + +0.1
4,211,075 + +0.1
4,211,075 + -0.2
4,211,075 + -0.5
4,211,076 - -0.3
4,211,122 - +0.5
4,211,150 + +0.8
4,211,191 - +0.7
4,211,194 + -0.6
4,211,205 - +0.8
4,211,229 + +0.1
4,211,376 + +0.5
4,211,376 + +0.2
4,211,376 + -0.4
4,211,376 + +0.0
4,211,377 - -0.0
4,211,377 - -0.9
4,211,377 - +0.1
4,211,377 - -0.1
4,211,377 - -0.1
4,211,377 - -0.6
4,211,377 - +0.4
4,211,378 + -1.3
4,211,378 + +0.4
4,211,417 + -0.0
4,211,417 + +0.8
4,211,417 + -0.1
4,211,418 - -0.4
4,211,418 - +0.5
4,211,420 + -0.1
4,211,420 + -0.2
4,211,420 + -0.1
4,211,453 + +0.2
4,211,454 - -0.4
4,211,454 - -0.8
4,211,467 - +1.2
4,211,467 - +0.1
4,211,467 - +0.5
4,211,651 + Ga0059261_4079 0.15 -0.4
4,211,651 + Ga0059261_4079 0.15 -1.0
4,211,652 - Ga0059261_4079 0.15 +0.1
4,211,652 - Ga0059261_4079 0.15 +0.5
4,211,652 - +0.8
4,211,687 + Ga0059261_4079 0.16 -0.6
4,211,687 + Ga0059261_4079 0.16 +1.1
4,211,687 + Ga0059261_4079 0.16 -0.2
4,211,687 + Ga0059261_4079 0.16 -0.3
4,211,687 + Ga0059261_4079 0.16 -0.2
4,211,687 + Ga0059261_4079 0.16 +0.3
4,211,687 + Ga0059261_4079 0.16 -0.4
4,211,687 + Ga0059261_4079 0.16 -0.1
4,211,687 + Ga0059261_4079 0.16 +0.6
4,211,687 + Ga0059261_4079 0.16 -0.3
4,211,688 - Ga0059261_4079 0.17 -0.0
4,211,688 - Ga0059261_4079 0.17 +0.1
4,211,688 - Ga0059261_4079 0.17 -0.2
4,211,688 - Ga0059261_4079 0.17 -0.1
4,211,688 - Ga0059261_4079 0.17 +0.0
4,211,688 - Ga0059261_4079 0.17 -0.8
4,211,688 - Ga0059261_4079 0.17 -0.4
4,211,688 - Ga0059261_4079 0.17 +0.1
4,211,688 - Ga0059261_4079 0.17 +0.6
4,211,688 - Ga0059261_4079 0.17 -0.3
4,212,056 + Ga0059261_4079 0.35 +0.4
4,212,057 - Ga0059261_4079 0.35 -0.2
4,212,071 + Ga0059261_4079 0.35 +0.1
4,212,071 + Ga0059261_4079 0.35 +1.7
4,212,071 + Ga0059261_4079 0.35 -1.2
4,212,072 - Ga0059261_4079 0.36 -0.5
4,212,072 - Ga0059261_4079 0.36 -0.2
4,212,072 - Ga0059261_4079 0.36 +0.0
4,212,092 + Ga0059261_4079 0.36 +0.4
4,212,110 + Ga0059261_4079 0.37 -0.2
4,212,110 + Ga0059261_4079 0.37 +1.4
4,212,110 + Ga0059261_4079 0.37 +0.8
4,212,110 + Ga0059261_4079 0.37 +1.1
4,212,110 + Ga0059261_4079 0.37 +0.0
4,212,111 - Ga0059261_4079 0.37 +0.0
4,212,111 - Ga0059261_4079 0.37 -0.1
4,212,125 + Ga0059261_4079 0.38 -0.1
4,212,125 + Ga0059261_4079 0.38 -0.9
4,212,125 + Ga0059261_4079 0.38 +0.5
4,212,125 + Ga0059261_4079 0.38 +0.6
4,212,125 + Ga0059261_4079 0.38 -1.0
4,212,125 + Ga0059261_4079 0.38 -0.1
4,212,125 + Ga0059261_4079 0.38 -0.2
4,212,125 + Ga0059261_4079 0.38 +0.3
4,212,126 - Ga0059261_4079 0.38 -0.1
4,212,126 - Ga0059261_4079 0.38 -0.4
4,212,126 - Ga0059261_4079 0.38 +0.3
4,212,126 - Ga0059261_4079 0.38 +0.5
4,212,126 - Ga0059261_4079 0.38 +0.5
4,212,126 - Ga0059261_4079 0.38 +0.6
4,212,126 - Ga0059261_4079 0.38 +0.1
4,212,126 - Ga0059261_4079 0.38 -0.6
4,212,135 - Ga0059261_4079 0.39 -0.2
4,212,135 - Ga0059261_4079 0.39 +0.2
4,212,185 + Ga0059261_4079 0.41 -0.2
4,212,185 + Ga0059261_4079 0.41 +0.0
4,212,185 + Ga0059261_4079 0.41 +0.2
4,212,185 + Ga0059261_4079 0.41 +1.2
4,212,186 - Ga0059261_4079 0.41 -0.6
4,212,186 - Ga0059261_4079 0.41 +0.1
4,212,614 + Ga0059261_4079 0.62 -0.7
4,212,614 + Ga0059261_4079 0.62 -0.1
4,212,614 + Ga0059261_4079 0.62 +0.3
4,212,615 - Ga0059261_4079 0.62 +0.3
4,212,615 - Ga0059261_4079 0.62 +0.2
4,212,615 - Ga0059261_4079 0.62 +0.0
4,212,615 - Ga0059261_4079 0.62 +0.6
4,212,615 - Ga0059261_4079 0.62 -1.6
4,212,615 - Ga0059261_4079 0.62 +0.2
4,212,615 - Ga0059261_4079 0.62 +0.1
4,212,615 - Ga0059261_4079 0.62 -0.8
4,212,615 - Ga0059261_4079 0.62 +0.6
4,212,668 + Ga0059261_4079 0.65 +0.0
4,212,668 + Ga0059261_4079 0.65 +0.8
4,212,668 + Ga0059261_4079 0.65 -0.9
4,212,668 + Ga0059261_4079 0.65 -0.5
4,212,668 + Ga0059261_4079 0.65 +0.1
4,212,668 + Ga0059261_4079 0.65 -1.4
4,212,668 + Ga0059261_4079 0.65 -1.5
4,212,668 + Ga0059261_4079 0.65 +0.2
4,212,668 + Ga0059261_4079 0.65 +1.1
4,212,668 + Ga0059261_4079 0.65 -0.0
4,212,669 - Ga0059261_4079 0.65 -0.1
4,212,669 - Ga0059261_4079 0.65 +0.2
4,212,669 - Ga0059261_4079 0.65 +1.1
4,212,669 - Ga0059261_4079 0.65 -0.4
4,212,669 - Ga0059261_4079 0.65 +0.6
4,212,738 - Ga0059261_4079 0.68 -1.6
4,212,738 - Ga0059261_4079 0.68 +0.3
4,212,764 + Ga0059261_4079 0.70 +0.4
4,212,764 + Ga0059261_4079 0.70 +0.5
4,212,764 + Ga0059261_4079 0.70 -0.2
4,212,764 + Ga0059261_4079 0.70 +1.0
4,212,764 + Ga0059261_4079 0.70 -0.3
4,212,765 - -1.2
4,212,765 - Ga0059261_4079 0.70 -0.1
4,212,765 - Ga0059261_4079 0.70 -0.3
4,212,765 - Ga0059261_4079 0.70 +0.0
4,212,765 - Ga0059261_4079 0.70 -0.8
4,212,765 - Ga0059261_4079 0.70 +0.3
4,212,781 + Ga0059261_4079 0.71 -0.7
4,212,846 + Ga0059261_4079 0.74 +1.7
4,212,846 + Ga0059261_4079 0.74 +0.8
4,212,847 - Ga0059261_4079 0.74 +0.5
4,212,847 - Ga0059261_4079 0.74 -0.2
4,212,847 - Ga0059261_4079 0.74 -0.0
4,212,847 - Ga0059261_4079 0.74 -0.0
4,212,857 + Ga0059261_4079 0.74 -0.6
4,212,857 + Ga0059261_4079 0.74 +0.1
4,212,857 + Ga0059261_4079 0.74 -0.4
4,212,858 - Ga0059261_4079 0.74 -0.4
4,212,858 - Ga0059261_4079 0.74 -0.5
4,212,858 - Ga0059261_4079 0.74 -0.5
4,212,858 - Ga0059261_4079 0.74 +0.8
4,213,281 + -0.4
4,213,282 - +0.8
4,213,473 + -0.8
4,213,590 - +0.3
4,213,632 + -1.8
4,213,752 + Ga0059261_4080 0.12 -0.2
4,213,927 + Ga0059261_4080 0.37 -0.2
4,213,927 + Ga0059261_4080 0.37 -0.3
4,213,928 - Ga0059261_4080 0.37 -0.5
4,213,928 - Ga0059261_4080 0.37 -0.1
4,213,928 - Ga0059261_4080 0.37 +0.8
4,214,105 + Ga0059261_4080 0.62 -0.1
4,214,105 + Ga0059261_4080 0.62 +0.3
4,214,105 + Ga0059261_4080 0.62 -1.4
4,214,105 + Ga0059261_4080 0.62 -0.1
4,214,106 - Ga0059261_4080 0.62 -2.6
4,214,232 - Ga0059261_4080 0.80 -0.7

Or see this region's nucleotide sequence