Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4074

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4073 and Ga0059261_4074 overlap by 4 nucleotidesGa0059261_4074 and Ga0059261_4075 are separated by 7 nucleotides Ga0059261_4073: Ga0059261_4073 - PAS domain S-box, at 4,203,614 to 4,205,488 _4073 Ga0059261_4074: Ga0059261_4074 - two component transcriptional regulator, LuxR family, at 4,205,485 to 4,206,108 _4074 Ga0059261_4075: Ga0059261_4075 - sulfate adenylyltransferase, large subunit, at 4,206,116 to 4,208,023 _4075 Position (kb) 4205 4206 4207Strain fitness (log2 ratio) -1 0 1at 4204.568 kb on + strand, within Ga0059261_4073at 4204.568 kb on + strand, within Ga0059261_4073at 4204.568 kb on + strand, within Ga0059261_4073at 4204.568 kb on + strand, within Ga0059261_4073at 4204.569 kb on - strand, within Ga0059261_4073at 4204.569 kb on - strand, within Ga0059261_4073at 4204.569 kb on - strand, within Ga0059261_4073at 4204.569 kb on - strand, within Ga0059261_4073at 4204.569 kb on - strand, within Ga0059261_4073at 4204.569 kb on - strand, within Ga0059261_4073at 4204.569 kb on - strand, within Ga0059261_4073at 4204.570 kb on + strand, within Ga0059261_4073at 4204.570 kb on + strand, within Ga0059261_4073at 4204.570 kb on + strand, within Ga0059261_4073at 4204.570 kb on + strand, within Ga0059261_4073at 4204.570 kb on + strand, within Ga0059261_4073at 4204.570 kb on + strand, within Ga0059261_4073at 4204.571 kb on - strand, within Ga0059261_4073at 4204.571 kb on - strand, within Ga0059261_4073at 4204.571 kb on - strand, within Ga0059261_4073at 4204.582 kb on + strand, within Ga0059261_4073at 4204.583 kb on - strand, within Ga0059261_4073at 4204.621 kb on + strandat 4204.621 kb on + strand, within Ga0059261_4073at 4204.728 kb on + strand, within Ga0059261_4073at 4204.729 kb on - strand, within Ga0059261_4073at 4204.729 kb on - strand, within Ga0059261_4073at 4204.729 kb on - strand, within Ga0059261_4073at 4204.949 kb on + strand, within Ga0059261_4073at 4204.949 kb on + strand, within Ga0059261_4073at 4204.950 kb on - strand, within Ga0059261_4073at 4204.950 kb on - strand, within Ga0059261_4073at 4204.950 kb on - strand, within Ga0059261_4073at 4205.062 kb on + strand, within Ga0059261_4073at 4205.062 kb on + strand, within Ga0059261_4073at 4205.062 kb on + strand, within Ga0059261_4073at 4205.063 kb on - strand, within Ga0059261_4073at 4205.063 kb on - strand, within Ga0059261_4073at 4205.127 kb on + strand, within Ga0059261_4073at 4205.128 kb on - strand, within Ga0059261_4073at 4205.128 kb on - strand, within Ga0059261_4073at 4205.136 kb on + strand, within Ga0059261_4073at 4205.137 kb on - strand, within Ga0059261_4073at 4205.137 kb on - strand, within Ga0059261_4073at 4205.380 kb on + strandat 4205.380 kb on + strandat 4205.380 kb on + strandat 4205.381 kb on - strandat 4205.381 kb on - strandat 4205.569 kb on + strand, within Ga0059261_4074at 4205.597 kb on + strand, within Ga0059261_4074at 4205.597 kb on + strand, within Ga0059261_4074at 4205.598 kb on - strand, within Ga0059261_4074at 4205.598 kb on - strand, within Ga0059261_4074at 4205.819 kb on + strand, within Ga0059261_4074at 4205.820 kb on - strand, within Ga0059261_4074at 4205.977 kb on + strand, within Ga0059261_4074at 4205.977 kb on + strand, within Ga0059261_4074at 4205.977 kb on + strand, within Ga0059261_4074at 4205.977 kb on + strand, within Ga0059261_4074at 4205.980 kb on + strand, within Ga0059261_4074at 4205.980 kb on + strand, within Ga0059261_4074at 4205.980 kb on + strand, within Ga0059261_4074at 4205.980 kb on + strand, within Ga0059261_4074at 4205.980 kb on + strand, within Ga0059261_4074at 4205.980 kb on + strand, within Ga0059261_4074at 4205.980 kb on + strand, within Ga0059261_4074at 4205.981 kb on - strand, within Ga0059261_4074at 4205.981 kb on - strand, within Ga0059261_4074at 4205.981 kb on - strandat 4205.981 kb on - strand, within Ga0059261_4074at 4205.991 kb on - strand, within Ga0059261_4074at 4206.001 kb on - strand, within Ga0059261_4074at 4206.001 kb on - strand, within Ga0059261_4074at 4206.001 kb on - strand, within Ga0059261_4074at 4206.228 kb on + strandat 4206.228 kb on + strandat 4206.229 kb on - strandat 4206.229 kb on - strandat 4206.229 kb on - strandat 4206.229 kb on - strandat 4206.229 kb on - strandat 4206.282 kb on + strandat 4206.556 kb on - strand, within Ga0059261_4075at 4206.556 kb on - strand, within Ga0059261_4075at 4206.556 kb on - strand, within Ga0059261_4075at 4206.699 kb on + strand, within Ga0059261_4075at 4206.699 kb on + strand, within Ga0059261_4075at 4206.699 kb on + strand, within Ga0059261_4075at 4206.699 kb on + strand, within Ga0059261_4075at 4206.699 kb on + strand, within Ga0059261_4075at 4206.699 kb on + strand, within Ga0059261_4075at 4206.699 kb on + strand, within Ga0059261_4075at 4206.699 kb on + strand, within Ga0059261_4075at 4206.699 kb on + strand, within Ga0059261_4075at 4206.700 kb on - strand, within Ga0059261_4075at 4206.700 kb on - strand, within Ga0059261_4075at 4206.700 kb on - strand, within Ga0059261_4075at 4206.700 kb on - strand, within Ga0059261_4075at 4206.700 kb on - strand, within Ga0059261_4075at 4206.700 kb on - strand, within Ga0059261_4075at 4206.700 kb on - strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.703 kb on + strand, within Ga0059261_4075at 4206.704 kb on - strand, within Ga0059261_4075at 4206.704 kb on - strand, within Ga0059261_4075at 4206.704 kb on - strand, within Ga0059261_4075at 4206.704 kb on - strand, within Ga0059261_4075at 4206.704 kb on - strand, within Ga0059261_4075at 4206.704 kb on - strand, within Ga0059261_4075at 4206.704 kb on - strandat 4206.704 kb on - strand, within Ga0059261_4075at 4206.807 kb on + strand, within Ga0059261_4075at 4206.807 kb on + strand, within Ga0059261_4075at 4206.807 kb on + strand, within Ga0059261_4075at 4206.807 kb on + strand, within Ga0059261_4075at 4206.807 kb on + strand, within Ga0059261_4075at 4206.808 kb on - strand, within Ga0059261_4075at 4206.823 kb on + strand, within Ga0059261_4075at 4206.970 kb on - strand, within Ga0059261_4075at 4206.983 kb on + strand, within Ga0059261_4075at 4206.983 kb on + strand, within Ga0059261_4075at 4207.097 kb on + strand, within Ga0059261_4075

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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4,204,568 + Ga0059261_4073 0.51 +0.2
4,204,568 + Ga0059261_4073 0.51 -0.4
4,204,568 + Ga0059261_4073 0.51 -0.9
4,204,568 + Ga0059261_4073 0.51 -0.2
4,204,569 - Ga0059261_4073 0.51 +1.1
4,204,569 - Ga0059261_4073 0.51 +0.2
4,204,569 - Ga0059261_4073 0.51 -0.3
4,204,569 - Ga0059261_4073 0.51 -0.2
4,204,569 - Ga0059261_4073 0.51 -1.0
4,204,569 - Ga0059261_4073 0.51 -1.2
4,204,569 - Ga0059261_4073 0.51 -0.1
4,204,570 + Ga0059261_4073 0.51 -1.5
4,204,570 + Ga0059261_4073 0.51 +1.0
4,204,570 + Ga0059261_4073 0.51 -0.5
4,204,570 + Ga0059261_4073 0.51 +0.1
4,204,570 + Ga0059261_4073 0.51 -0.2
4,204,570 + Ga0059261_4073 0.51 -0.4
4,204,571 - Ga0059261_4073 0.51 +0.3
4,204,571 - Ga0059261_4073 0.51 -1.4
4,204,571 - Ga0059261_4073 0.51 -1.0
4,204,582 + Ga0059261_4073 0.52 +0.6
4,204,583 - Ga0059261_4073 0.52 -0.2
4,204,621 + -1.2
4,204,621 + Ga0059261_4073 0.54 -0.5
4,204,728 + Ga0059261_4073 0.59 +0.6
4,204,729 - Ga0059261_4073 0.59 -0.9
4,204,729 - Ga0059261_4073 0.59 +0.7
4,204,729 - Ga0059261_4073 0.59 -0.1
4,204,949 + Ga0059261_4073 0.71 +0.0
4,204,949 + Ga0059261_4073 0.71 -0.4
4,204,950 - Ga0059261_4073 0.71 -0.7
4,204,950 - Ga0059261_4073 0.71 +0.4
4,204,950 - Ga0059261_4073 0.71 -0.3
4,205,062 + Ga0059261_4073 0.77 +0.8
4,205,062 + Ga0059261_4073 0.77 -0.8
4,205,062 + Ga0059261_4073 0.77 +0.0
4,205,063 - Ga0059261_4073 0.77 +0.0
4,205,063 - Ga0059261_4073 0.77 -0.1
4,205,127 + Ga0059261_4073 0.81 -0.4
4,205,128 - Ga0059261_4073 0.81 -0.3
4,205,128 - Ga0059261_4073 0.81 -0.0
4,205,136 + Ga0059261_4073 0.81 -0.8
4,205,137 - Ga0059261_4073 0.81 +0.1
4,205,137 - Ga0059261_4073 0.81 -0.2
4,205,380 + +0.2
4,205,380 + +0.7
4,205,380 + +0.2
4,205,381 - -0.2
4,205,381 - -0.2
4,205,569 + Ga0059261_4074 0.13 -0.7
4,205,597 + Ga0059261_4074 0.18 +0.6
4,205,597 + Ga0059261_4074 0.18 +0.5
4,205,598 - Ga0059261_4074 0.18 +0.9
4,205,598 - Ga0059261_4074 0.18 -0.3
4,205,819 + Ga0059261_4074 0.54 +0.3
4,205,820 - Ga0059261_4074 0.54 +0.5
4,205,977 + Ga0059261_4074 0.79 -0.8
4,205,977 + Ga0059261_4074 0.79 -0.5
4,205,977 + Ga0059261_4074 0.79 +0.3
4,205,977 + Ga0059261_4074 0.79 -0.5
4,205,980 + Ga0059261_4074 0.79 +0.2
4,205,980 + Ga0059261_4074 0.79 +0.1
4,205,980 + Ga0059261_4074 0.79 -0.1
4,205,980 + Ga0059261_4074 0.79 +0.3
4,205,980 + Ga0059261_4074 0.79 -0.1
4,205,980 + Ga0059261_4074 0.79 +0.3
4,205,980 + Ga0059261_4074 0.79 -0.2
4,205,981 - Ga0059261_4074 0.79 -0.0
4,205,981 - Ga0059261_4074 0.79 +0.4
4,205,981 - -0.8
4,205,981 - Ga0059261_4074 0.79 +1.2
4,205,991 - Ga0059261_4074 0.81 -0.6
4,206,001 - Ga0059261_4074 0.83 -0.5
4,206,001 - Ga0059261_4074 0.83 +0.4
4,206,001 - Ga0059261_4074 0.83 -0.2
4,206,228 + -0.2
4,206,228 + -0.3
4,206,229 - -0.6
4,206,229 - +0.8
4,206,229 - -1.0
4,206,229 - -1.0
4,206,229 - +0.4
4,206,282 + -0.0
4,206,556 - Ga0059261_4075 0.23 -1.1
4,206,556 - Ga0059261_4075 0.23 +0.0
4,206,556 - Ga0059261_4075 0.23 -0.4
4,206,699 + Ga0059261_4075 0.31 -1.0
4,206,699 + Ga0059261_4075 0.31 -0.2
4,206,699 + Ga0059261_4075 0.31 -0.3
4,206,699 + Ga0059261_4075 0.31 -0.3
4,206,699 + Ga0059261_4075 0.31 -0.1
4,206,699 + Ga0059261_4075 0.31 -0.5
4,206,699 + Ga0059261_4075 0.31 +0.4
4,206,699 + Ga0059261_4075 0.31 +0.3
4,206,699 + Ga0059261_4075 0.31 +0.5
4,206,700 - Ga0059261_4075 0.31 -0.6
4,206,700 - Ga0059261_4075 0.31 -0.8
4,206,700 - Ga0059261_4075 0.31 -0.7
4,206,700 - Ga0059261_4075 0.31 -0.3
4,206,700 - Ga0059261_4075 0.31 -0.4
4,206,700 - Ga0059261_4075 0.31 -0.3
4,206,700 - Ga0059261_4075 0.31 +0.4
4,206,703 + Ga0059261_4075 0.31 -0.0
4,206,703 + Ga0059261_4075 0.31 +0.5
4,206,703 + Ga0059261_4075 0.31 -0.2
4,206,703 + Ga0059261_4075 0.31 -0.4
4,206,703 + Ga0059261_4075 0.31 -0.4
4,206,703 + Ga0059261_4075 0.31 -0.1
4,206,703 + Ga0059261_4075 0.31 +0.8
4,206,703 + Ga0059261_4075 0.31 +0.2
4,206,703 + Ga0059261_4075 0.31 +0.1
4,206,703 + Ga0059261_4075 0.31 -0.2
4,206,704 - Ga0059261_4075 0.31 +0.3
4,206,704 - Ga0059261_4075 0.31 +0.0
4,206,704 - Ga0059261_4075 0.31 +0.4
4,206,704 - Ga0059261_4075 0.31 -0.3
4,206,704 - Ga0059261_4075 0.31 -1.3
4,206,704 - Ga0059261_4075 0.31 +0.1
4,206,704 - -0.8
4,206,704 - Ga0059261_4075 0.31 -0.8
4,206,807 + Ga0059261_4075 0.36 +0.9
4,206,807 + Ga0059261_4075 0.36 -0.2
4,206,807 + Ga0059261_4075 0.36 -0.2
4,206,807 + Ga0059261_4075 0.36 +0.3
4,206,807 + Ga0059261_4075 0.36 -0.5
4,206,808 - Ga0059261_4075 0.36 -0.3
4,206,823 + Ga0059261_4075 0.37 -0.3
4,206,970 - Ga0059261_4075 0.45 -0.0
4,206,983 + Ga0059261_4075 0.45 -0.9
4,206,983 + Ga0059261_4075 0.45 -0.6
4,207,097 + Ga0059261_4075 0.51 -0.2

Or see this region's nucleotide sequence