Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18175

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18170 and CSW01_18175 are separated by 85 nucleotidesCSW01_18175 and CSW01_18180 are separated by 81 nucleotides CSW01_18170: CSW01_18170 - inosine/guanosine kinase, at 740,094 to 741,398 _18170 CSW01_18175: CSW01_18175 - LTA synthase family protein, at 741,484 to 743,457 _18175 CSW01_18180: CSW01_18180 - serine protease, at 743,539 to 744,531 _18180 Position (kb) 741 742 743 744Strain fitness (log2 ratio) -3 -2 -1 0 1at 740.554 kb on - strand, within CSW01_18170at 740.702 kb on + strand, within CSW01_18170at 740.762 kb on + strand, within CSW01_18170at 740.763 kb on + strand, within CSW01_18170at 740.763 kb on + strand, within CSW01_18170at 740.923 kb on + strand, within CSW01_18170at 740.926 kb on - strand, within CSW01_18170at 740.937 kb on - strand, within CSW01_18170at 740.939 kb on + strand, within CSW01_18170at 740.939 kb on + strand, within CSW01_18170at 740.963 kb on + strand, within CSW01_18170at 740.971 kb on - strand, within CSW01_18170at 741.061 kb on + strand, within CSW01_18170at 741.149 kb on + strand, within CSW01_18170at 741.157 kb on - strand, within CSW01_18170at 741.263 kb on - strand, within CSW01_18170at 741.265 kb on + strand, within CSW01_18170at 741.347 kb on + strandat 741.355 kb on - strandat 741.355 kb on - strandat 741.594 kb on + strandat 741.804 kb on - strand, within CSW01_18175at 741.917 kb on - strand, within CSW01_18175at 742.134 kb on - strand, within CSW01_18175at 742.141 kb on - strand, within CSW01_18175at 742.170 kb on - strand, within CSW01_18175at 742.175 kb on - strand, within CSW01_18175at 742.390 kb on + strand, within CSW01_18175at 742.398 kb on - strand, within CSW01_18175at 742.404 kb on + strand, within CSW01_18175at 742.536 kb on + strand, within CSW01_18175at 742.568 kb on - strand, within CSW01_18175at 742.787 kb on + strand, within CSW01_18175at 742.858 kb on + strand, within CSW01_18175at 742.884 kb on + strand, within CSW01_18175at 742.929 kb on + strand, within CSW01_18175at 742.983 kb on - strand, within CSW01_18175at 742.995 kb on - strand, within CSW01_18175at 743.001 kb on + strand, within CSW01_18175at 743.041 kb on - strand, within CSW01_18175at 743.286 kb on - strandat 743.397 kb on - strandat 743.397 kb on - strandat 743.464 kb on - strandat 743.634 kb on + strandat 743.636 kb on - strandat 743.648 kb on - strand, within CSW01_18180at 743.670 kb on - strand, within CSW01_18180at 743.673 kb on - strand, within CSW01_18180at 743.675 kb on - strand, within CSW01_18180at 743.683 kb on - strand, within CSW01_18180at 743.706 kb on + strand, within CSW01_18180at 743.799 kb on - strand, within CSW01_18180at 743.882 kb on - strand, within CSW01_18180at 743.934 kb on - strand, within CSW01_18180at 743.979 kb on + strand, within CSW01_18180at 743.986 kb on + strand, within CSW01_18180at 743.986 kb on + strand, within CSW01_18180at 743.986 kb on + strand, within CSW01_18180at 743.994 kb on - strand, within CSW01_18180at 744.040 kb on + strand, within CSW01_18180at 744.040 kb on + strand, within CSW01_18180at 744.048 kb on - strand, within CSW01_18180at 744.096 kb on - strand, within CSW01_18180at 744.105 kb on - strand, within CSW01_18180at 744.123 kb on + strand, within CSW01_18180at 744.164 kb on + strand, within CSW01_18180at 744.284 kb on + strand, within CSW01_18180at 744.284 kb on + strand, within CSW01_18180at 744.284 kb on - strand, within CSW01_18180at 744.292 kb on - strand, within CSW01_18180at 744.292 kb on - strand, within CSW01_18180at 744.296 kb on + strand, within CSW01_18180at 744.357 kb on + strand, within CSW01_18180

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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740,554 - CSW01_18170 0.35 +0.1
740,702 + CSW01_18170 0.47 +0.7
740,762 + CSW01_18170 0.51 +0.2
740,763 + CSW01_18170 0.51 -0.4
740,763 + CSW01_18170 0.51 +0.3
740,923 + CSW01_18170 0.64 +1.1
740,926 - CSW01_18170 0.64 -0.4
740,937 - CSW01_18170 0.65 -0.9
740,939 + CSW01_18170 0.65 +0.3
740,939 + CSW01_18170 0.65 +0.3
740,963 + CSW01_18170 0.67 -0.4
740,971 - CSW01_18170 0.67 +0.1
741,061 + CSW01_18170 0.74 -1.8
741,149 + CSW01_18170 0.81 -2.9
741,157 - CSW01_18170 0.81 +0.3
741,263 - CSW01_18170 0.90 +0.3
741,265 + CSW01_18170 0.90 +0.1
741,347 + -0.2
741,355 - +0.8
741,355 - +0.1
741,594 + -0.3
741,804 - CSW01_18175 0.16 -0.7
741,917 - CSW01_18175 0.22 +0.4
742,134 - CSW01_18175 0.33 +0.3
742,141 - CSW01_18175 0.33 -1.7
742,170 - CSW01_18175 0.35 -0.6
742,175 - CSW01_18175 0.35 +0.3
742,390 + CSW01_18175 0.46 -1.1
742,398 - CSW01_18175 0.46 -0.0
742,404 + CSW01_18175 0.47 -0.6
742,536 + CSW01_18175 0.53 -0.6
742,568 - CSW01_18175 0.55 -0.8
742,787 + CSW01_18175 0.66 +0.4
742,858 + CSW01_18175 0.70 -2.7
742,884 + CSW01_18175 0.71 -0.2
742,929 + CSW01_18175 0.73 +0.4
742,983 - CSW01_18175 0.76 +1.1
742,995 - CSW01_18175 0.77 -0.6
743,001 + CSW01_18175 0.77 -2.2
743,041 - CSW01_18175 0.79 -1.1
743,286 - +0.5
743,397 - +0.6
743,397 - +0.7
743,464 - -0.8
743,634 + +0.1
743,636 - -0.3
743,648 - CSW01_18180 0.11 +1.1
743,670 - CSW01_18180 0.13 +1.3
743,673 - CSW01_18180 0.13 -0.0
743,675 - CSW01_18180 0.14 +0.1
743,683 - CSW01_18180 0.15 -1.3
743,706 + CSW01_18180 0.17 -0.1
743,799 - CSW01_18180 0.26 +0.9
743,882 - CSW01_18180 0.35 -0.1
743,934 - CSW01_18180 0.40 +0.0
743,979 + CSW01_18180 0.44 +1.1
743,986 + CSW01_18180 0.45 -0.2
743,986 + CSW01_18180 0.45 +0.0
743,986 + CSW01_18180 0.45 -0.4
743,994 - CSW01_18180 0.46 -0.5
744,040 + CSW01_18180 0.50 -0.2
744,040 + CSW01_18180 0.50 +0.2
744,048 - CSW01_18180 0.51 -1.5
744,096 - CSW01_18180 0.56 -1.0
744,105 - CSW01_18180 0.57 -0.8
744,123 + CSW01_18180 0.59 -0.1
744,164 + CSW01_18180 0.63 -0.9
744,284 + CSW01_18180 0.75 -2.5
744,284 + CSW01_18180 0.75 +0.0
744,284 - CSW01_18180 0.75 +0.1
744,292 - CSW01_18180 0.76 +1.5
744,292 - CSW01_18180 0.76 +0.1
744,296 + CSW01_18180 0.76 +1.7
744,357 + CSW01_18180 0.82 +0.3

Or see this region's nucleotide sequence