Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15145

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15135 and CSW01_15140 are separated by 57 nucleotidesCSW01_15140 and CSW01_15145 are separated by 269 nucleotidesCSW01_15145 and CSW01_15150 are separated by 80 nucleotidesCSW01_15150 and CSW01_15155 are separated by 117 nucleotides CSW01_15135: CSW01_15135 - TonB-dependent siderophore receptor, at 253,609 to 255,588 _15135 CSW01_15140: CSW01_15140 - DUF2218 domain-containing protein, at 255,646 to 255,966 _15140 CSW01_15145: CSW01_15145 - acetate kinase, at 256,236 to 257,429 _15145 CSW01_15150: CSW01_15150 - hypothetical protein, at 257,510 to 257,806 _15150 CSW01_15155: CSW01_15155 - phosphoribosyl-AMP cyclohydrolase, at 257,924 to 258,493 _15155 Position (kb) 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 255.283 kb on + strand, within CSW01_15135at 255.343 kb on - strand, within CSW01_15135at 255.365 kb on - strand, within CSW01_15135at 255.365 kb on - strand, within CSW01_15135at 255.400 kb on - strandat 255.557 kb on + strandat 255.557 kb on + strandat 255.565 kb on - strandat 255.565 kb on - strandat 255.610 kb on - strandat 255.610 kb on - strandat 255.632 kb on - strandat 255.685 kb on + strand, within CSW01_15140at 255.693 kb on - strand, within CSW01_15140at 255.695 kb on - strand, within CSW01_15140at 255.806 kb on + strand, within CSW01_15140at 255.806 kb on + strand, within CSW01_15140at 255.806 kb on + strand, within CSW01_15140at 255.810 kb on + strand, within CSW01_15140at 255.814 kb on - strand, within CSW01_15140at 255.814 kb on - strand, within CSW01_15140at 256.006 kb on - strandat 256.006 kb on - strandat 256.205 kb on + strandat 256.213 kb on - strandat 256.223 kb on + strandat 256.246 kb on + strandat 256.324 kb on + strandat 256.325 kb on - strandat 256.325 kb on - strandat 256.332 kb on - strandat 256.332 kb on - strandat 256.352 kb on + strandat 256.446 kb on + strand, within CSW01_15145at 256.483 kb on + strand, within CSW01_15145at 256.484 kb on - strand, within CSW01_15145at 256.484 kb on - strand, within CSW01_15145at 256.484 kb on - strand, within CSW01_15145at 256.562 kb on - strand, within CSW01_15145at 256.676 kb on - strand, within CSW01_15145at 256.773 kb on + strand, within CSW01_15145at 256.875 kb on - strand, within CSW01_15145at 257.009 kb on - strand, within CSW01_15145at 257.079 kb on - strand, within CSW01_15145at 257.170 kb on + strand, within CSW01_15145at 257.178 kb on - strand, within CSW01_15145at 257.242 kb on - strand, within CSW01_15145at 257.266 kb on + strand, within CSW01_15145at 257.274 kb on - strand, within CSW01_15145at 257.352 kb on - strandat 257.354 kb on + strandat 257.362 kb on - strandat 257.362 kb on - strandat 257.474 kb on - strandat 257.510 kb on + strandat 257.518 kb on - strandat 257.524 kb on - strandat 257.534 kb on - strandat 257.534 kb on - strandat 257.534 kb on - strandat 257.571 kb on - strand, within CSW01_15150at 257.637 kb on + strand, within CSW01_15150at 257.637 kb on + strand, within CSW01_15150at 257.674 kb on + strand, within CSW01_15150at 257.785 kb on + strandat 257.840 kb on + strandat 257.840 kb on + strandat 257.954 kb on + strandat 257.962 kb on - strandat 257.962 kb on - strandat 258.010 kb on - strand, within CSW01_15155at 258.064 kb on + strand, within CSW01_15155at 258.171 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.229 kb on - strand, within CSW01_15155at 258.231 kb on + strand, within CSW01_15155at 258.303 kb on + strand, within CSW01_15155at 258.398 kb on + strand, within CSW01_15155at 258.401 kb on + strand, within CSW01_15155

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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255,283 + CSW01_15135 0.85 -0.0
255,343 - CSW01_15135 0.88 -0.4
255,365 - CSW01_15135 0.89 +0.5
255,365 - CSW01_15135 0.89 -0.6
255,400 - -0.9
255,557 + +1.1
255,557 + +0.6
255,565 - +1.1
255,565 - +0.1
255,610 - -0.4
255,610 - +0.0
255,632 - -0.5
255,685 + CSW01_15140 0.12 +0.0
255,693 - CSW01_15140 0.15 +0.0
255,695 - CSW01_15140 0.15 -0.4
255,806 + CSW01_15140 0.50 -1.0
255,806 + CSW01_15140 0.50 -0.2
255,806 + CSW01_15140 0.50 +1.1
255,810 + CSW01_15140 0.51 -0.6
255,814 - CSW01_15140 0.52 -0.3
255,814 - CSW01_15140 0.52 -1.2
256,006 - -0.5
256,006 - +1.1
256,205 + +0.6
256,213 - -0.7
256,223 + +0.2
256,246 + +0.3
256,324 + +0.5
256,325 - +0.1
256,325 - -0.3
256,332 - +0.6
256,332 - +2.0
256,352 + -0.1
256,446 + CSW01_15145 0.18 -0.4
256,483 + CSW01_15145 0.21 -1.0
256,484 - CSW01_15145 0.21 -1.2
256,484 - CSW01_15145 0.21 -0.0
256,484 - CSW01_15145 0.21 -0.3
256,562 - CSW01_15145 0.27 +0.5
256,676 - CSW01_15145 0.37 -0.8
256,773 + CSW01_15145 0.45 +0.2
256,875 - CSW01_15145 0.54 -0.0
257,009 - CSW01_15145 0.65 -0.0
257,079 - CSW01_15145 0.71 +0.5
257,170 + CSW01_15145 0.78 -0.2
257,178 - CSW01_15145 0.79 -0.3
257,242 - CSW01_15145 0.84 -0.4
257,266 + CSW01_15145 0.86 -0.7
257,274 - CSW01_15145 0.87 +1.6
257,352 - -0.0
257,354 + +0.4
257,362 - +1.1
257,362 - -1.0
257,474 - +0.2
257,510 + +0.7
257,518 - +0.1
257,524 - +0.4
257,534 - +0.4
257,534 - +0.5
257,534 - +1.4
257,571 - CSW01_15150 0.21 +0.5
257,637 + CSW01_15150 0.43 +0.3
257,637 + CSW01_15150 0.43 +1.4
257,674 + CSW01_15150 0.55 -0.1
257,785 + +1.2
257,840 + -0.1
257,840 + +0.1
257,954 + +0.0
257,962 - +0.7
257,962 - -0.1
258,010 - CSW01_15155 0.15 +0.7
258,064 + CSW01_15155 0.25 +0.2
258,171 + CSW01_15155 0.43 +0.9
258,221 + CSW01_15155 0.52 -0.2
258,221 + CSW01_15155 0.52 +0.6
258,221 + CSW01_15155 0.52 -1.1
258,229 - CSW01_15155 0.54 +0.1
258,231 + CSW01_15155 0.54 -0.3
258,303 + CSW01_15155 0.66 -2.5
258,398 + CSW01_15155 0.83 -0.2
258,401 + CSW01_15155 0.84 +0.5

Or see this region's nucleotide sequence