Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14845

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14840 and CSW01_14845 overlap by 7 nucleotidesCSW01_14845 and CSW01_14850 are separated by 1 nucleotidesCSW01_14850 and CSW01_14855 overlap by 14 nucleotides CSW01_14840: CSW01_14840 - aerotolerance protein BatD, at 185,633 to 187,285 _14840 CSW01_14845: CSW01_14845 - VWA domain-containing protein, at 187,279 to 189,219 _14845 CSW01_14850: CSW01_14850 - VWA domain-containing protein, at 189,221 to 190,177 _14850 CSW01_14855: CSW01_14855 - DUF4381 domain-containing protein, at 190,164 to 190,652 _14855 Position (kb) 187 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2 3at 186.459 kb on + strand, within CSW01_14840at 186.489 kb on - strand, within CSW01_14840at 186.573 kb on + strand, within CSW01_14840at 186.575 kb on + strand, within CSW01_14840at 186.583 kb on - strand, within CSW01_14840at 186.600 kb on + strand, within CSW01_14840at 186.620 kb on - strand, within CSW01_14840at 186.648 kb on - strand, within CSW01_14840at 186.659 kb on + strand, within CSW01_14840at 186.810 kb on + strand, within CSW01_14840at 186.849 kb on - strand, within CSW01_14840at 186.868 kb on - strand, within CSW01_14840at 186.891 kb on + strand, within CSW01_14840at 186.904 kb on - strand, within CSW01_14840at 186.968 kb on + strand, within CSW01_14840at 187.001 kb on + strand, within CSW01_14840at 187.235 kb on - strandat 187.265 kb on - strandat 187.318 kb on - strandat 187.355 kb on - strandat 187.378 kb on - strandat 187.460 kb on + strandat 187.540 kb on + strand, within CSW01_14845at 187.548 kb on - strand, within CSW01_14845at 187.686 kb on - strand, within CSW01_14845at 187.686 kb on - strand, within CSW01_14845at 187.722 kb on - strand, within CSW01_14845at 187.895 kb on + strand, within CSW01_14845at 187.895 kb on + strand, within CSW01_14845at 187.895 kb on + strand, within CSW01_14845at 187.895 kb on + strand, within CSW01_14845at 187.903 kb on - strand, within CSW01_14845at 187.903 kb on - strand, within CSW01_14845at 187.905 kb on + strand, within CSW01_14845at 188.012 kb on + strand, within CSW01_14845at 188.012 kb on + strand, within CSW01_14845at 188.020 kb on - strand, within CSW01_14845at 188.020 kb on - strand, within CSW01_14845at 188.020 kb on - strand, within CSW01_14845at 188.030 kb on - strand, within CSW01_14845at 188.158 kb on + strand, within CSW01_14845at 188.200 kb on + strand, within CSW01_14845at 188.219 kb on + strand, within CSW01_14845at 188.296 kb on + strand, within CSW01_14845at 188.296 kb on + strand, within CSW01_14845at 188.304 kb on - strand, within CSW01_14845at 188.403 kb on + strand, within CSW01_14845at 188.411 kb on - strand, within CSW01_14845at 188.437 kb on + strand, within CSW01_14845at 188.445 kb on - strand, within CSW01_14845at 188.445 kb on - strand, within CSW01_14845at 188.447 kb on + strand, within CSW01_14845at 188.455 kb on - strand, within CSW01_14845at 188.602 kb on - strand, within CSW01_14845at 188.631 kb on + strand, within CSW01_14845at 188.653 kb on + strand, within CSW01_14845at 188.695 kb on - strand, within CSW01_14845at 188.705 kb on - strand, within CSW01_14845at 188.869 kb on - strand, within CSW01_14845at 188.869 kb on - strand, within CSW01_14845at 188.971 kb on + strand, within CSW01_14845at 188.974 kb on - strand, within CSW01_14845at 189.012 kb on - strand, within CSW01_14845at 189.043 kb on - strandat 189.137 kb on - strandat 189.180 kb on + strandat 189.180 kb on + strandat 189.180 kb on + strandat 189.180 kb on + strandat 189.180 kb on + strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.188 kb on - strandat 189.225 kb on - strandat 189.259 kb on + strandat 189.259 kb on + strandat 189.259 kb on - strandat 189.345 kb on - strand, within CSW01_14850at 189.397 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.450 kb on + strand, within CSW01_14850at 189.458 kb on - strand, within CSW01_14850at 189.458 kb on - strand, within CSW01_14850at 189.458 kb on - strand, within CSW01_14850at 189.458 kb on - strand, within CSW01_14850at 189.465 kb on - strand, within CSW01_14850at 189.470 kb on - strand, within CSW01_14850at 189.552 kb on + strand, within CSW01_14850at 189.562 kb on + strand, within CSW01_14850at 189.619 kb on + strand, within CSW01_14850at 189.631 kb on + strand, within CSW01_14850at 189.652 kb on + strand, within CSW01_14850at 189.706 kb on + strand, within CSW01_14850at 189.740 kb on + strand, within CSW01_14850at 189.757 kb on - strand, within CSW01_14850at 189.798 kb on + strand, within CSW01_14850at 189.806 kb on - strand, within CSW01_14850at 189.824 kb on - strand, within CSW01_14850at 189.849 kb on - strand, within CSW01_14850at 189.849 kb on - strand, within CSW01_14850at 189.916 kb on + strand, within CSW01_14850at 189.924 kb on - strand, within CSW01_14850at 189.924 kb on - strand, within CSW01_14850at 190.045 kb on + strand, within CSW01_14850at 190.062 kb on + strand, within CSW01_14850at 190.119 kb on + strandat 190.119 kb on + strandat 190.119 kb on + strandat 190.119 kb on + strandat 190.119 kb on + strandat 190.127 kb on - strandat 190.127 kb on - strandat 190.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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186,459 + CSW01_14840 0.50 +1.1
186,489 - CSW01_14840 0.52 -0.0
186,573 + CSW01_14840 0.57 +0.1
186,575 + CSW01_14840 0.57 +0.2
186,583 - CSW01_14840 0.57 -0.5
186,600 + CSW01_14840 0.58 +0.9
186,620 - CSW01_14840 0.60 +0.8
186,648 - CSW01_14840 0.61 -0.4
186,659 + CSW01_14840 0.62 -0.9
186,810 + CSW01_14840 0.71 +0.7
186,849 - CSW01_14840 0.74 +1.3
186,868 - CSW01_14840 0.75 -0.2
186,891 + CSW01_14840 0.76 -0.0
186,904 - CSW01_14840 0.77 +1.5
186,968 + CSW01_14840 0.81 -2.7
187,001 + CSW01_14840 0.83 +1.0
187,235 - -1.4
187,265 - -1.2
187,318 - -0.6
187,355 - -0.1
187,378 - -0.3
187,460 + -0.0
187,540 + CSW01_14845 0.13 -0.2
187,548 - CSW01_14845 0.14 -0.2
187,686 - CSW01_14845 0.21 -2.3
187,686 - CSW01_14845 0.21 -0.9
187,722 - CSW01_14845 0.23 +0.5
187,895 + CSW01_14845 0.32 -0.0
187,895 + CSW01_14845 0.32 -0.6
187,895 + CSW01_14845 0.32 -0.4
187,895 + CSW01_14845 0.32 -0.1
187,903 - CSW01_14845 0.32 -0.3
187,903 - CSW01_14845 0.32 -0.6
187,905 + CSW01_14845 0.32 +0.2
188,012 + CSW01_14845 0.38 -0.5
188,012 + CSW01_14845 0.38 -1.4
188,020 - CSW01_14845 0.38 +0.1
188,020 - CSW01_14845 0.38 -0.9
188,020 - CSW01_14845 0.38 +0.6
188,030 - CSW01_14845 0.39 -1.2
188,158 + CSW01_14845 0.45 -0.3
188,200 + CSW01_14845 0.47 +0.4
188,219 + CSW01_14845 0.48 -0.5
188,296 + CSW01_14845 0.52 -2.6
188,296 + CSW01_14845 0.52 -2.1
188,304 - CSW01_14845 0.53 -0.4
188,403 + CSW01_14845 0.58 -1.1
188,411 - CSW01_14845 0.58 +1.1
188,437 + CSW01_14845 0.60 -0.3
188,445 - CSW01_14845 0.60 -1.2
188,445 - CSW01_14845 0.60 -0.1
188,447 + CSW01_14845 0.60 +1.7
188,455 - CSW01_14845 0.61 +0.4
188,602 - CSW01_14845 0.68 -0.1
188,631 + CSW01_14845 0.70 -0.1
188,653 + CSW01_14845 0.71 +0.2
188,695 - CSW01_14845 0.73 -0.6
188,705 - CSW01_14845 0.73 -0.3
188,869 - CSW01_14845 0.82 -0.5
188,869 - CSW01_14845 0.82 +0.6
188,971 + CSW01_14845 0.87 +0.1
188,974 - CSW01_14845 0.87 -0.3
189,012 - CSW01_14845 0.89 -0.5
189,043 - -0.1
189,137 - -0.0
189,180 + +0.8
189,180 + +0.9
189,180 + +1.6
189,180 + +1.7
189,180 + -0.8
189,188 - +0.4
189,188 - -0.1
189,188 - +0.1
189,188 - -1.2
189,188 - -1.0
189,188 - -2.0
189,225 - -0.7
189,259 + +0.1
189,259 + -0.7
189,259 - +0.2
189,345 - CSW01_14850 0.13 +3.1
189,397 + CSW01_14850 0.18 -0.0
189,450 + CSW01_14850 0.24 -0.2
189,450 + CSW01_14850 0.24 -1.3
189,450 + CSW01_14850 0.24 +0.3
189,450 + CSW01_14850 0.24 +0.3
189,450 + CSW01_14850 0.24 +0.0
189,450 + CSW01_14850 0.24 -0.3
189,458 - CSW01_14850 0.25 +1.1
189,458 - CSW01_14850 0.25 +1.8
189,458 - CSW01_14850 0.25 -0.2
189,458 - CSW01_14850 0.25 +0.8
189,465 - CSW01_14850 0.25 +0.5
189,470 - CSW01_14850 0.26 -0.4
189,552 + CSW01_14850 0.35 -0.8
189,562 + CSW01_14850 0.36 +0.6
189,619 + CSW01_14850 0.42 +0.6
189,631 + CSW01_14850 0.43 +0.5
189,652 + CSW01_14850 0.45 +0.4
189,706 + CSW01_14850 0.51 +0.0
189,740 + CSW01_14850 0.54 +0.1
189,757 - CSW01_14850 0.56 +0.0
189,798 + CSW01_14850 0.60 +0.7
189,806 - CSW01_14850 0.61 -0.4
189,824 - CSW01_14850 0.63 +0.0
189,849 - CSW01_14850 0.66 +0.5
189,849 - CSW01_14850 0.66 +0.1
189,916 + CSW01_14850 0.73 +0.1
189,924 - CSW01_14850 0.73 -0.1
189,924 - CSW01_14850 0.73 +0.8
190,045 + CSW01_14850 0.86 -0.3
190,062 + CSW01_14850 0.88 -0.9
190,119 + -0.3
190,119 + +0.3
190,119 + -0.1
190,119 + +0.9
190,119 + -0.8
190,127 - +0.5
190,127 - -0.0
190,127 - -0.5

Or see this region's nucleotide sequence