Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14620

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14615 and CSW01_14620 are separated by 47 nucleotidesCSW01_14620 and CSW01_14625 are separated by 50 nucleotidesCSW01_14625 and CSW01_14630 overlap by 41 nucleotides CSW01_14615: CSW01_14615 - type VI secretion system membrane subunit TssM, at 132,468 to 136,013 _14615 CSW01_14620: CSW01_14620 - type VI secretion protein, at 136,061 to 137,326 _14620 CSW01_14625: CSW01_14625 - hypothetical protein, at 137,377 to 137,619 _14625 CSW01_14630: CSW01_14630 - type VI secretion system tip protein VgrG, at 137,579 to 140,632 _14630 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.098 kb on - strand, within CSW01_14615at 135.193 kb on - strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.202 kb on - strand, within CSW01_14615at 135.202 kb on - strand, within CSW01_14615at 135.202 kb on - strand, within CSW01_14615at 135.208 kb on - strand, within CSW01_14615at 135.225 kb on - strand, within CSW01_14615at 135.232 kb on + strand, within CSW01_14615at 135.232 kb on + strand, within CSW01_14615at 135.232 kb on + strand, within CSW01_14615at 135.284 kb on + strand, within CSW01_14615at 135.347 kb on + strand, within CSW01_14615at 135.347 kb on + strand, within CSW01_14615at 135.385 kb on - strand, within CSW01_14615at 135.511 kb on - strand, within CSW01_14615at 135.526 kb on - strand, within CSW01_14615at 135.531 kb on - strand, within CSW01_14615at 135.639 kb on - strand, within CSW01_14615at 135.652 kb on - strand, within CSW01_14615at 135.706 kb on + strandat 135.714 kb on - strandat 135.714 kb on - strandat 135.734 kb on + strandat 135.742 kb on - strandat 135.742 kb on - strandat 135.774 kb on - strandat 135.778 kb on + strandat 135.803 kb on - strandat 135.947 kb on + strandat 135.985 kb on + strandat 135.995 kb on + strandat 135.995 kb on + strandat 135.995 kb on + strandat 135.995 kb on + strandat 136.003 kb on - strandat 136.003 kb on - strandat 136.009 kb on + strandat 136.073 kb on - strandat 136.121 kb on - strandat 136.131 kb on + strandat 136.131 kb on + strandat 136.131 kb on + strandat 136.139 kb on - strandat 136.139 kb on - strandat 136.139 kb on - strandat 136.310 kb on - strand, within CSW01_14620at 136.323 kb on + strand, within CSW01_14620at 136.328 kb on + strand, within CSW01_14620at 136.328 kb on + strand, within CSW01_14620at 136.331 kb on - strand, within CSW01_14620at 136.333 kb on + strand, within CSW01_14620at 136.336 kb on - strand, within CSW01_14620at 136.338 kb on + strand, within CSW01_14620at 136.358 kb on + strand, within CSW01_14620at 136.408 kb on + strand, within CSW01_14620at 136.421 kb on - strand, within CSW01_14620at 136.421 kb on - strand, within CSW01_14620at 136.474 kb on + strand, within CSW01_14620at 136.482 kb on - strand, within CSW01_14620at 136.500 kb on + strand, within CSW01_14620at 136.513 kb on - strand, within CSW01_14620at 136.521 kb on - strand, within CSW01_14620at 136.555 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.675 kb on + strand, within CSW01_14620at 136.680 kb on + strand, within CSW01_14620at 136.680 kb on + strand, within CSW01_14620at 136.688 kb on - strand, within CSW01_14620at 136.703 kb on - strand, within CSW01_14620at 136.768 kb on + strand, within CSW01_14620at 136.776 kb on - strand, within CSW01_14620at 136.866 kb on - strand, within CSW01_14620at 136.983 kb on - strand, within CSW01_14620at 136.996 kb on - strand, within CSW01_14620at 136.997 kb on - strand, within CSW01_14620at 137.136 kb on - strand, within CSW01_14620at 137.144 kb on - strand, within CSW01_14620at 137.165 kb on - strand, within CSW01_14620at 137.189 kb on + strand, within CSW01_14620at 137.189 kb on + strand, within CSW01_14620at 137.189 kb on + strand, within CSW01_14620at 137.197 kb on - strand, within CSW01_14620at 137.197 kb on - strand, within CSW01_14620at 137.197 kb on - strand, within CSW01_14620at 137.199 kb on + strand, within CSW01_14620at 137.199 kb on + strand, within CSW01_14620at 137.207 kb on - strandat 137.207 kb on - strandat 137.342 kb on - strandat 137.408 kb on + strand, within CSW01_14625at 137.417 kb on - strand, within CSW01_14625at 137.606 kb on + strandat 137.614 kb on + strandat 137.682 kb on + strandat 137.683 kb on - strandat 137.700 kb on - strandat 137.700 kb on - strandat 137.717 kb on + strandat 137.740 kb on + strandat 137.820 kb on - strandat 137.850 kb on - strandat 137.977 kb on - strand, within CSW01_14630at 138.015 kb on + strand, within CSW01_14630at 138.046 kb on - strand, within CSW01_14630at 138.073 kb on + strand, within CSW01_14630at 138.101 kb on - strand, within CSW01_14630at 138.182 kb on + strand, within CSW01_14630at 138.185 kb on - strand, within CSW01_14630at 138.220 kb on + strand, within CSW01_14630at 138.249 kb on - strand, within CSW01_14630at 138.249 kb on - strand, within CSW01_14630at 138.270 kb on - strand, within CSW01_14630at 138.317 kb on - strand, within CSW01_14630at 138.317 kb on - strand, within CSW01_14630at 138.317 kb on - strand, within CSW01_14630

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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135,098 - CSW01_14615 0.74 -0.3
135,193 - CSW01_14615 0.77 +0.2
135,194 + CSW01_14615 0.77 +0.6
135,194 + CSW01_14615 0.77 +0.2
135,194 + CSW01_14615 0.77 -0.7
135,194 + CSW01_14615 0.77 +0.3
135,194 + CSW01_14615 0.77 -0.8
135,194 + CSW01_14615 0.77 +0.5
135,194 + CSW01_14615 0.77 +0.2
135,194 + CSW01_14615 0.77 -0.2
135,194 + CSW01_14615 0.77 +0.4
135,194 + CSW01_14615 0.77 -0.0
135,202 - CSW01_14615 0.77 +0.3
135,202 - CSW01_14615 0.77 -0.4
135,202 - CSW01_14615 0.77 +1.6
135,208 - CSW01_14615 0.77 +0.2
135,225 - CSW01_14615 0.78 -0.9
135,232 + CSW01_14615 0.78 +0.1
135,232 + CSW01_14615 0.78 +0.4
135,232 + CSW01_14615 0.78 -0.3
135,284 + CSW01_14615 0.79 -0.2
135,347 + CSW01_14615 0.81 -0.7
135,347 + CSW01_14615 0.81 -0.6
135,385 - CSW01_14615 0.82 +0.1
135,511 - CSW01_14615 0.86 +0.1
135,526 - CSW01_14615 0.86 -0.0
135,531 - CSW01_14615 0.86 +0.5
135,639 - CSW01_14615 0.89 +0.1
135,652 - CSW01_14615 0.90 -0.3
135,706 + +0.3
135,714 - +0.5
135,714 - +2.0
135,734 + -0.3
135,742 - +0.6
135,742 - -0.1
135,774 - -0.5
135,778 + -0.3
135,803 - +0.4
135,947 + +0.2
135,985 + -0.8
135,995 + -1.0
135,995 + +0.2
135,995 + +0.1
135,995 + -1.7
136,003 - +0.1
136,003 - -0.1
136,009 + +0.0
136,073 - -3.0
136,121 - +2.3
136,131 + -0.1
136,131 + +0.1
136,131 + +0.7
136,139 - -1.3
136,139 - +0.4
136,139 - -0.3
136,310 - CSW01_14620 0.20 +0.3
136,323 + CSW01_14620 0.21 -1.7
136,328 + CSW01_14620 0.21 +0.4
136,328 + CSW01_14620 0.21 +0.1
136,331 - CSW01_14620 0.21 +0.4
136,333 + CSW01_14620 0.21 -1.2
136,336 - CSW01_14620 0.22 +0.8
136,338 + CSW01_14620 0.22 -0.0
136,358 + CSW01_14620 0.23 +0.7
136,408 + CSW01_14620 0.27 +0.6
136,421 - CSW01_14620 0.28 -1.9
136,421 - CSW01_14620 0.28 -0.7
136,474 + CSW01_14620 0.33 +0.2
136,482 - CSW01_14620 0.33 +0.5
136,500 + CSW01_14620 0.35 +0.1
136,513 - CSW01_14620 0.36 -0.5
136,521 - CSW01_14620 0.36 -0.4
136,555 + CSW01_14620 0.39 +2.3
136,560 + CSW01_14620 0.39 +1.5
136,560 + CSW01_14620 0.39 +0.4
136,560 + CSW01_14620 0.39 +1.1
136,560 + CSW01_14620 0.39 -0.1
136,675 + CSW01_14620 0.48 +1.9
136,680 + CSW01_14620 0.49 -0.2
136,680 + CSW01_14620 0.49 +0.6
136,688 - CSW01_14620 0.50 -0.6
136,703 - CSW01_14620 0.51 +1.1
136,768 + CSW01_14620 0.56 -0.2
136,776 - CSW01_14620 0.56 -0.9
136,866 - CSW01_14620 0.64 +0.7
136,983 - CSW01_14620 0.73 +0.5
136,996 - CSW01_14620 0.74 -0.9
136,997 - CSW01_14620 0.74 +0.8
137,136 - CSW01_14620 0.85 +0.8
137,144 - CSW01_14620 0.86 +0.7
137,165 - CSW01_14620 0.87 -0.3
137,189 + CSW01_14620 0.89 -0.5
137,189 + CSW01_14620 0.89 -1.5
137,189 + CSW01_14620 0.89 +0.0
137,197 - CSW01_14620 0.90 +0.2
137,197 - CSW01_14620 0.90 +0.0
137,197 - CSW01_14620 0.90 +0.3
137,199 + CSW01_14620 0.90 +0.3
137,199 + CSW01_14620 0.90 -0.6
137,207 - -0.0
137,207 - +0.5
137,342 - -0.1
137,408 + CSW01_14625 0.13 -0.4
137,417 - CSW01_14625 0.16 +0.0
137,606 + +0.0
137,614 + +0.1
137,682 + -0.4
137,683 - -0.2
137,700 - -0.6
137,700 - -0.3
137,717 + -0.7
137,740 + +0.5
137,820 - +0.0
137,850 - -0.3
137,977 - CSW01_14630 0.13 -0.5
138,015 + CSW01_14630 0.14 +0.4
138,046 - CSW01_14630 0.15 -0.9
138,073 + CSW01_14630 0.16 +1.1
138,101 - CSW01_14630 0.17 +0.7
138,182 + CSW01_14630 0.20 +0.5
138,185 - CSW01_14630 0.20 -0.1
138,220 + CSW01_14630 0.21 +0.4
138,249 - CSW01_14630 0.22 -1.0
138,249 - CSW01_14630 0.22 -1.0
138,270 - CSW01_14630 0.23 -0.2
138,317 - CSW01_14630 0.24 +0.2
138,317 - CSW01_14630 0.24 -0.4
138,317 - CSW01_14630 0.24 +0.2

Or see this region's nucleotide sequence