Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14235

Experiment: LB_Anaerobic_120MIN_ZN12B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14230 and CSW01_14235 are separated by 340 nucleotidesCSW01_14235 and CSW01_14240 are separated by 13 nucleotidesCSW01_14240 and CSW01_14245 overlap by 4 nucleotides CSW01_14230: CSW01_14230 - serine/threonine transporter SstT, at 44,079 to 45,296 _14230 CSW01_14235: CSW01_14235 - copper chaperone PCu(A)C, at 45,637 to 46,089 _14235 CSW01_14240: CSW01_14240 - SCO family protein, at 46,103 to 46,684 _14240 CSW01_14245: CSW01_14245 - hypothetical protein, at 46,681 to 47,103 _14245 Position (kb) 45 46 47Strain fitness (log2 ratio) -1 0 1 2at 44.817 kb on - strand, within CSW01_14230at 44.826 kb on + strand, within CSW01_14230at 44.826 kb on + strand, within CSW01_14230at 44.914 kb on + strand, within CSW01_14230at 44.914 kb on + strand, within CSW01_14230at 44.934 kb on + strand, within CSW01_14230at 44.972 kb on + strand, within CSW01_14230at 44.980 kb on - strand, within CSW01_14230at 45.012 kb on + strand, within CSW01_14230at 45.022 kb on + strand, within CSW01_14230at 45.022 kb on + strand, within CSW01_14230at 45.128 kb on - strand, within CSW01_14230at 45.298 kb on + strandat 45.344 kb on + strandat 45.350 kb on + strandat 45.506 kb on - strandat 45.506 kb on - strandat 45.579 kb on - strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.603 kb on + strandat 45.603 kb on - strandat 45.603 kb on - strandat 45.639 kb on + strandat 45.642 kb on - strandat 45.647 kb on - strandat 45.649 kb on + strandat 45.657 kb on - strandat 45.788 kb on - strand, within CSW01_14235at 45.811 kb on + strand, within CSW01_14235at 45.883 kb on - strand, within CSW01_14235at 45.921 kb on - strand, within CSW01_14235at 45.933 kb on + strand, within CSW01_14235at 45.933 kb on + strand, within CSW01_14235at 46.033 kb on + strand, within CSW01_14235at 46.213 kb on + strand, within CSW01_14240at 46.221 kb on - strand, within CSW01_14240at 46.229 kb on - strand, within CSW01_14240at 46.389 kb on - strand, within CSW01_14240at 46.391 kb on + strand, within CSW01_14240at 46.391 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.444 kb on - strand, within CSW01_14240at 46.444 kb on - strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.497 kb on - strand, within CSW01_14240at 46.571 kb on + strand, within CSW01_14240at 46.571 kb on + strand, within CSW01_14240at 46.576 kb on + strand, within CSW01_14240at 46.581 kb on + strand, within CSW01_14240at 46.589 kb on - strand, within CSW01_14240at 46.589 kb on - strand, within CSW01_14240at 46.712 kb on - strandat 46.787 kb on + strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.902 kb on - strand, within CSW01_14245at 46.928 kb on + strand, within CSW01_14245at 46.945 kb on + strand, within CSW01_14245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
remove
44,817 - CSW01_14230 0.61 -0.8
44,826 + CSW01_14230 0.61 -1.4
44,826 + CSW01_14230 0.61 +1.3
44,914 + CSW01_14230 0.69 +0.1
44,914 + CSW01_14230 0.69 +0.1
44,934 + CSW01_14230 0.70 -0.6
44,972 + CSW01_14230 0.73 -0.3
44,980 - CSW01_14230 0.74 -0.7
45,012 + CSW01_14230 0.77 +0.9
45,022 + CSW01_14230 0.77 +1.8
45,022 + CSW01_14230 0.77 +0.4
45,128 - CSW01_14230 0.86 -0.5
45,298 + +0.4
45,344 + -0.3
45,350 + -0.6
45,506 - -0.1
45,506 - +0.0
45,579 - -0.2
45,595 + -1.4
45,595 + +0.2
45,595 + +0.5
45,595 + +0.0
45,595 + -0.5
45,595 + +0.2
45,603 + -0.2
45,603 - +0.9
45,603 - -1.5
45,639 + -0.0
45,642 - -0.0
45,647 - -1.2
45,649 + -0.7
45,657 - -0.1
45,788 - CSW01_14235 0.33 -0.3
45,811 + CSW01_14235 0.38 -0.4
45,883 - CSW01_14235 0.54 -0.3
45,921 - CSW01_14235 0.63 -0.3
45,933 + CSW01_14235 0.65 -0.6
45,933 + CSW01_14235 0.65 +0.6
46,033 + CSW01_14235 0.87 -0.9
46,213 + CSW01_14240 0.19 +1.0
46,221 - CSW01_14240 0.20 -0.3
46,229 - CSW01_14240 0.22 +0.1
46,389 - CSW01_14240 0.49 -0.1
46,391 + CSW01_14240 0.49 -0.3
46,391 + CSW01_14240 0.49 +0.9
46,436 + CSW01_14240 0.57 +0.6
46,436 + CSW01_14240 0.57 +0.9
46,436 + CSW01_14240 0.57 +0.5
46,444 - CSW01_14240 0.59 +0.2
46,444 - CSW01_14240 0.59 -0.2
46,477 + CSW01_14240 0.64 +1.1
46,477 + CSW01_14240 0.64 +0.6
46,477 + CSW01_14240 0.64 +0.8
46,485 - CSW01_14240 0.66 -0.7
46,485 - CSW01_14240 0.66 -0.3
46,485 - CSW01_14240 0.66 -0.2
46,497 - CSW01_14240 0.68 +0.8
46,571 + CSW01_14240 0.80 +0.4
46,571 + CSW01_14240 0.80 -0.9
46,576 + CSW01_14240 0.81 +0.4
46,581 + CSW01_14240 0.82 -0.7
46,589 - CSW01_14240 0.84 +0.6
46,589 - CSW01_14240 0.84 +0.0
46,712 - -1.0
46,787 + CSW01_14245 0.25 +0.1
46,797 - CSW01_14245 0.27 +1.0
46,797 - CSW01_14245 0.27 -0.7
46,797 - CSW01_14245 0.27 +2.3
46,797 - CSW01_14245 0.27 +0.9
46,797 - CSW01_14245 0.27 -0.1
46,797 - CSW01_14245 0.27 +1.3
46,902 - CSW01_14245 0.52 -0.3
46,928 + CSW01_14245 0.58 +0.1
46,945 + CSW01_14245 0.62 +0.1

Or see this region's nucleotide sequence