Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09355

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09350 and CSW01_09355 are separated by 135 nucleotidesCSW01_09355 and CSW01_09360 are separated by 17 nucleotides CSW01_09350: CSW01_09350 - formate C-acetyltransferase, at 2,005,717 to 2,007,993 _09350 CSW01_09355: CSW01_09355 - DUF2219 domain-containing protein, at 2,008,129 to 2,009,157 _09355 CSW01_09360: CSW01_09360 - methyl-accepting chemotaxis protein, at 2,009,175 to 2,011,055 _09360 Position (kb) 2008 2009 2010Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2007.180 kb on + strand, within CSW01_09350at 2007.258 kb on - strand, within CSW01_09350at 2007.272 kb on + strand, within CSW01_09350at 2007.272 kb on + strand, within CSW01_09350at 2007.272 kb on + strand, within CSW01_09350at 2007.295 kb on + strand, within CSW01_09350at 2007.295 kb on - strand, within CSW01_09350at 2007.303 kb on - strand, within CSW01_09350at 2007.443 kb on + strand, within CSW01_09350at 2007.569 kb on + strand, within CSW01_09350at 2007.608 kb on + strand, within CSW01_09350at 2007.702 kb on + strand, within CSW01_09350at 2007.710 kb on - strand, within CSW01_09350at 2007.735 kb on + strand, within CSW01_09350at 2007.735 kb on + strand, within CSW01_09350at 2007.735 kb on + strand, within CSW01_09350at 2007.735 kb on + strand, within CSW01_09350at 2007.735 kb on + strand, within CSW01_09350at 2007.735 kb on + strand, within CSW01_09350at 2007.735 kb on + strand, within CSW01_09350at 2007.743 kb on - strand, within CSW01_09350at 2007.743 kb on - strand, within CSW01_09350at 2007.743 kb on - strand, within CSW01_09350at 2007.750 kb on - strand, within CSW01_09350at 2007.807 kb on + strandat 2007.838 kb on + strandat 2007.856 kb on - strandat 2007.858 kb on + strandat 2007.882 kb on + strandat 2007.905 kb on - strandat 2007.922 kb on - strandat 2007.927 kb on + strandat 2008.006 kb on - strandat 2008.192 kb on + strandat 2008.287 kb on - strand, within CSW01_09355at 2008.467 kb on + strand, within CSW01_09355at 2008.467 kb on + strand, within CSW01_09355at 2008.467 kb on + strand, within CSW01_09355at 2008.475 kb on - strand, within CSW01_09355at 2008.475 kb on - strand, within CSW01_09355at 2008.486 kb on - strand, within CSW01_09355at 2008.490 kb on - strand, within CSW01_09355at 2008.545 kb on - strand, within CSW01_09355at 2008.609 kb on - strand, within CSW01_09355at 2008.718 kb on - strand, within CSW01_09355at 2008.720 kb on + strand, within CSW01_09355at 2008.720 kb on + strand, within CSW01_09355at 2008.721 kb on + strand, within CSW01_09355at 2008.721 kb on + strand, within CSW01_09355at 2008.869 kb on + strand, within CSW01_09355at 2008.892 kb on + strand, within CSW01_09355at 2008.962 kb on + strand, within CSW01_09355at 2008.967 kb on + strand, within CSW01_09355at 2008.972 kb on + strand, within CSW01_09355at 2008.975 kb on - strand, within CSW01_09355at 2008.994 kb on - strand, within CSW01_09355at 2009.011 kb on + strand, within CSW01_09355at 2009.065 kb on + strandat 2009.066 kb on + strandat 2009.066 kb on + strandat 2009.073 kb on - strandat 2009.151 kb on + strandat 2009.159 kb on - strandat 2009.159 kb on - strandat 2009.211 kb on + strandat 2009.254 kb on + strandat 2009.257 kb on - strandat 2009.262 kb on - strandat 2009.262 kb on - strandat 2009.373 kb on + strand, within CSW01_09360at 2009.424 kb on + strand, within CSW01_09360at 2009.449 kb on - strand, within CSW01_09360at 2009.456 kb on - strand, within CSW01_09360at 2009.564 kb on - strand, within CSW01_09360at 2009.681 kb on - strand, within CSW01_09360at 2009.725 kb on - strand, within CSW01_09360at 2009.786 kb on + strand, within CSW01_09360at 2009.794 kb on - strand, within CSW01_09360at 2009.818 kb on + strand, within CSW01_09360at 2009.818 kb on + strand, within CSW01_09360at 2009.848 kb on + strand, within CSW01_09360at 2009.848 kb on - strand, within CSW01_09360at 2009.921 kb on + strand, within CSW01_09360at 2009.940 kb on - strand, within CSW01_09360at 2009.992 kb on + strand, within CSW01_09360at 2010.015 kb on - strand, within CSW01_09360at 2010.015 kb on - strand, within CSW01_09360at 2010.022 kb on - strand, within CSW01_09360at 2010.045 kb on - strand, within CSW01_09360at 2010.110 kb on - strand, within CSW01_09360at 2010.157 kb on - strand, within CSW01_09360

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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2,007,180 + CSW01_09350 0.64 -1.1
2,007,258 - CSW01_09350 0.68 -1.1
2,007,272 + CSW01_09350 0.68 -1.2
2,007,272 + CSW01_09350 0.68 -2.4
2,007,272 + CSW01_09350 0.68 -2.5
2,007,295 + CSW01_09350 0.69 +0.1
2,007,295 - CSW01_09350 0.69 -0.1
2,007,303 - CSW01_09350 0.70 -0.6
2,007,443 + CSW01_09350 0.76 -1.5
2,007,569 + CSW01_09350 0.81 -0.8
2,007,608 + CSW01_09350 0.83 -0.9
2,007,702 + CSW01_09350 0.87 -1.2
2,007,710 - CSW01_09350 0.88 -1.5
2,007,735 + CSW01_09350 0.89 -1.7
2,007,735 + CSW01_09350 0.89 -0.8
2,007,735 + CSW01_09350 0.89 -0.8
2,007,735 + CSW01_09350 0.89 -2.4
2,007,735 + CSW01_09350 0.89 -1.9
2,007,735 + CSW01_09350 0.89 -1.1
2,007,735 + CSW01_09350 0.89 -2.7
2,007,743 - CSW01_09350 0.89 -2.2
2,007,743 - CSW01_09350 0.89 -3.9
2,007,743 - CSW01_09350 0.89 -0.0
2,007,750 - CSW01_09350 0.89 -1.8
2,007,807 + -2.8
2,007,838 + -1.5
2,007,856 - -2.1
2,007,858 + -0.9
2,007,882 + -1.8
2,007,905 - +0.8
2,007,922 - +0.8
2,007,927 + -0.3
2,008,006 - -0.9
2,008,192 + +1.6
2,008,287 - CSW01_09355 0.15 -1.2
2,008,467 + CSW01_09355 0.33 +1.2
2,008,467 + CSW01_09355 0.33 -0.9
2,008,467 + CSW01_09355 0.33 +0.7
2,008,475 - CSW01_09355 0.34 +0.1
2,008,475 - CSW01_09355 0.34 +0.2
2,008,486 - CSW01_09355 0.35 +0.7
2,008,490 - CSW01_09355 0.35 -0.6
2,008,545 - CSW01_09355 0.40 +0.4
2,008,609 - CSW01_09355 0.47 +1.3
2,008,718 - CSW01_09355 0.57 +1.3
2,008,720 + CSW01_09355 0.57 -0.5
2,008,720 + CSW01_09355 0.57 +1.8
2,008,721 + CSW01_09355 0.58 -0.0
2,008,721 + CSW01_09355 0.58 +0.1
2,008,869 + CSW01_09355 0.72 -0.7
2,008,892 + CSW01_09355 0.74 +0.5
2,008,962 + CSW01_09355 0.81 -0.1
2,008,967 + CSW01_09355 0.81 +0.2
2,008,972 + CSW01_09355 0.82 +0.4
2,008,975 - CSW01_09355 0.82 +1.1
2,008,994 - CSW01_09355 0.84 -0.7
2,009,011 + CSW01_09355 0.86 +0.3
2,009,065 + +0.3
2,009,066 + -0.9
2,009,066 + +0.3
2,009,073 - +0.1
2,009,151 + +0.1
2,009,159 - -0.2
2,009,159 - -0.1
2,009,211 + +0.7
2,009,254 + -0.4
2,009,257 - -0.8
2,009,262 - +0.2
2,009,262 - +0.4
2,009,373 + CSW01_09360 0.11 -0.4
2,009,424 + CSW01_09360 0.13 -0.8
2,009,449 - CSW01_09360 0.15 +0.3
2,009,456 - CSW01_09360 0.15 -0.1
2,009,564 - CSW01_09360 0.21 -1.1
2,009,681 - CSW01_09360 0.27 +0.0
2,009,725 - CSW01_09360 0.29 -0.9
2,009,786 + CSW01_09360 0.32 +0.9
2,009,794 - CSW01_09360 0.33 +1.0
2,009,818 + CSW01_09360 0.34 -0.4
2,009,818 + CSW01_09360 0.34 +0.4
2,009,848 + CSW01_09360 0.36 +0.3
2,009,848 - CSW01_09360 0.36 -0.5
2,009,921 + CSW01_09360 0.40 -0.1
2,009,940 - CSW01_09360 0.41 -0.6
2,009,992 + CSW01_09360 0.43 -0.2
2,010,015 - CSW01_09360 0.45 -0.1
2,010,015 - CSW01_09360 0.45 -2.1
2,010,022 - CSW01_09360 0.45 +0.5
2,010,045 - CSW01_09360 0.46 +1.9
2,010,110 - CSW01_09360 0.50 +0.3
2,010,157 - CSW01_09360 0.52 +1.7

Or see this region's nucleotide sequence