Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08100

Experiment: LB_Anaerobic_120MIN_ZN12B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_08090 and CSW01_08095 are separated by 3 nucleotidesCSW01_08095 and CSW01_08100 are separated by 47 nucleotidesCSW01_08100 and CSW01_08105 are separated by 208 nucleotidesCSW01_08105 and CSW01_08110 are separated by 3 nucleotides CSW01_08090: CSW01_08090 - ABC transporter permease, at 1,722,759 to 1,723,907 _08090 CSW01_08095: CSW01_08095 - ATP-binding protein, at 1,723,911 to 1,724,360 _08095 CSW01_08100: CSW01_08100 - homoserine O-succinyltransferase, at 1,724,408 to 1,725,367 _08100 CSW01_08105: CSW01_08105 - type IV pilus biogenesis/stability protein PilW, at 1,725,576 to 1,726,289 _08105 CSW01_08110: CSW01_08110 - hypothetical protein, at 1,726,293 to 1,726,517 _08110 Position (kb) 1724 1725 1726Strain fitness (log2 ratio) -2 -1 0 1at 1723.640 kb on - strand, within CSW01_08090at 1723.776 kb on - strand, within CSW01_08090at 1723.776 kb on - strand, within CSW01_08090at 1723.828 kb on - strandat 1723.840 kb on - strandat 1723.873 kb on + strandat 1723.916 kb on - strandat 1723.923 kb on + strandat 1723.975 kb on - strand, within CSW01_08095at 1724.065 kb on - strand, within CSW01_08095at 1724.202 kb on + strand, within CSW01_08095at 1724.232 kb on + strand, within CSW01_08095at 1724.275 kb on - strand, within CSW01_08095at 1724.276 kb on - strand, within CSW01_08095at 1724.300 kb on + strand, within CSW01_08095at 1724.416 kb on + strandat 1724.421 kb on + strandat 1724.460 kb on + strandat 1724.558 kb on - strand, within CSW01_08100at 1724.625 kb on - strand, within CSW01_08100at 1724.705 kb on - strand, within CSW01_08100at 1724.757 kb on + strand, within CSW01_08100at 1724.758 kb on - strand, within CSW01_08100at 1724.758 kb on - strand, within CSW01_08100at 1724.811 kb on - strand, within CSW01_08100at 1724.840 kb on - strand, within CSW01_08100at 1724.955 kb on + strand, within CSW01_08100at 1724.958 kb on - strand, within CSW01_08100at 1724.958 kb on - strand, within CSW01_08100at 1724.970 kb on + strand, within CSW01_08100at 1724.983 kb on - strand, within CSW01_08100at 1725.001 kb on - strand, within CSW01_08100at 1725.123 kb on - strand, within CSW01_08100at 1725.296 kb on - strandat 1725.466 kb on - strandat 1725.592 kb on + strandat 1725.644 kb on + strandat 1725.649 kb on + strand, within CSW01_08105at 1725.657 kb on - strand, within CSW01_08105at 1725.699 kb on + strand, within CSW01_08105at 1725.782 kb on - strand, within CSW01_08105at 1725.791 kb on + strand, within CSW01_08105at 1725.806 kb on + strand, within CSW01_08105at 1725.972 kb on + strand, within CSW01_08105at 1726.176 kb on - strand, within CSW01_08105at 1726.176 kb on - strand, within CSW01_08105at 1726.178 kb on + strand, within CSW01_08105at 1726.291 kb on - strandat 1726.313 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
remove
1,723,640 - CSW01_08090 0.77 -1.3
1,723,776 - CSW01_08090 0.89 -0.1
1,723,776 - CSW01_08090 0.89 -1.8
1,723,828 - +0.0
1,723,840 - +0.4
1,723,873 + -0.6
1,723,916 - -1.2
1,723,923 + -1.3
1,723,975 - CSW01_08095 0.14 +0.3
1,724,065 - CSW01_08095 0.34 +0.2
1,724,202 + CSW01_08095 0.65 -0.0
1,724,232 + CSW01_08095 0.71 -1.4
1,724,275 - CSW01_08095 0.81 -0.0
1,724,276 - CSW01_08095 0.81 -0.4
1,724,300 + CSW01_08095 0.86 +0.4
1,724,416 + +1.2
1,724,421 + -2.5
1,724,460 + -1.4
1,724,558 - CSW01_08100 0.16 +0.1
1,724,625 - CSW01_08100 0.23 +0.5
1,724,705 - CSW01_08100 0.31 -0.4
1,724,757 + CSW01_08100 0.36 -1.4
1,724,758 - CSW01_08100 0.36 +0.5
1,724,758 - CSW01_08100 0.36 -0.2
1,724,811 - CSW01_08100 0.42 +0.4
1,724,840 - CSW01_08100 0.45 -0.7
1,724,955 + CSW01_08100 0.57 +1.1
1,724,958 - CSW01_08100 0.57 -0.3
1,724,958 - CSW01_08100 0.57 -1.0
1,724,970 + CSW01_08100 0.59 -0.4
1,724,983 - CSW01_08100 0.60 -0.2
1,725,001 - CSW01_08100 0.62 -1.2
1,725,123 - CSW01_08100 0.74 -0.1
1,725,296 - +0.2
1,725,466 - +0.0
1,725,592 + +0.3
1,725,644 + -0.2
1,725,649 + CSW01_08105 0.10 +0.0
1,725,657 - CSW01_08105 0.11 -0.0
1,725,699 + CSW01_08105 0.17 -0.2
1,725,782 - CSW01_08105 0.29 +0.8
1,725,791 + CSW01_08105 0.30 +0.5
1,725,806 + CSW01_08105 0.32 +0.1
1,725,972 + CSW01_08105 0.55 +0.2
1,726,176 - CSW01_08105 0.84 +0.2
1,726,176 - CSW01_08105 0.84 +0.3
1,726,178 + CSW01_08105 0.84 +0.1
1,726,291 - +0.5
1,726,313 - -0.4

Or see this region's nucleotide sequence