Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04655

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04645 and CSW01_04650 are separated by 235 nucleotidesCSW01_04650 and CSW01_04655 are separated by 64 nucleotidesCSW01_04655 and CSW01_04660 are separated by 236 nucleotides CSW01_04645: CSW01_04645 - methionine import ATP-binding protein MetN, at 965,445 to 966,479 _04645 CSW01_04650: CSW01_04650 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 966,715 to 967,275 _04650 CSW01_04655: CSW01_04655 - HTH-type transcriptional regulator TreR, at 967,340 to 968,290 _04655 CSW01_04660: CSW01_04660 - PTS trehalose transporter subunit IIBC, at 968,527 to 969,963 _04660 Position (kb) 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.485 kb on + strandat 966.493 kb on - strandat 966.495 kb on + strandat 966.501 kb on - strandat 966.942 kb on - strand, within CSW01_04650at 967.040 kb on + strand, within CSW01_04650at 967.048 kb on - strand, within CSW01_04650at 967.185 kb on + strand, within CSW01_04650at 967.251 kb on - strandat 967.283 kb on + strandat 967.377 kb on + strandat 967.460 kb on - strand, within CSW01_04655at 967.529 kb on + strand, within CSW01_04655at 967.579 kb on + strand, within CSW01_04655at 967.584 kb on + strand, within CSW01_04655at 967.584 kb on + strand, within CSW01_04655at 967.584 kb on + strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.592 kb on - strand, within CSW01_04655at 967.676 kb on - strand, within CSW01_04655at 967.717 kb on - strand, within CSW01_04655at 967.739 kb on + strand, within CSW01_04655at 967.739 kb on + strand, within CSW01_04655at 967.756 kb on + strand, within CSW01_04655at 967.757 kb on - strand, within CSW01_04655at 967.764 kb on + strand, within CSW01_04655at 967.769 kb on - strand, within CSW01_04655at 967.769 kb on - strand, within CSW01_04655at 967.776 kb on - strand, within CSW01_04655at 967.823 kb on - strand, within CSW01_04655at 967.851 kb on - strand, within CSW01_04655at 967.910 kb on + strand, within CSW01_04655at 967.929 kb on - strand, within CSW01_04655at 968.080 kb on + strand, within CSW01_04655at 968.133 kb on + strand, within CSW01_04655at 968.241 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.246 kb on + strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.254 kb on - strandat 968.298 kb on - strandat 968.299 kb on - strandat 968.492 kb on + strandat 968.541 kb on + strandat 968.591 kb on - strandat 968.629 kb on + strandat 968.646 kb on + strandat 968.652 kb on + strandat 968.683 kb on + strand, within CSW01_04660at 968.703 kb on - strand, within CSW01_04660at 968.857 kb on + strand, within CSW01_04660at 968.911 kb on + strand, within CSW01_04660at 968.996 kb on - strand, within CSW01_04660at 969.104 kb on + strand, within CSW01_04660at 969.104 kb on + strand, within CSW01_04660at 969.112 kb on - strand, within CSW01_04660at 969.119 kb on - strand, within CSW01_04660at 969.154 kb on - strand, within CSW01_04660at 969.228 kb on + strand, within CSW01_04660at 969.236 kb on - strand, within CSW01_04660at 969.241 kb on + strand, within CSW01_04660at 969.249 kb on - strand, within CSW01_04660at 969.249 kb on - strand, within CSW01_04660at 969.250 kb on + strand, within CSW01_04660at 969.256 kb on + strand, within CSW01_04660at 969.264 kb on - strand, within CSW01_04660at 969.264 kb on - strand, within CSW01_04660

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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966,485 + -0.5
966,485 + +0.5
966,485 + -0.2
966,485 + +0.4
966,485 + +0.1
966,485 + +0.5
966,485 + +0.8
966,485 + +0.4
966,485 + -0.2
966,493 - -1.6
966,495 + +0.5
966,501 - +0.5
966,942 - CSW01_04650 0.40 -2.8
967,040 + CSW01_04650 0.58 -2.1
967,048 - CSW01_04650 0.59 +0.2
967,185 + CSW01_04650 0.84 -0.3
967,251 - -0.0
967,283 + +0.8
967,377 + -0.5
967,460 - CSW01_04655 0.13 +0.2
967,529 + CSW01_04655 0.20 -0.5
967,579 + CSW01_04655 0.25 +0.7
967,584 + CSW01_04655 0.26 -1.4
967,584 + CSW01_04655 0.26 +0.1
967,584 + CSW01_04655 0.26 +0.5
967,592 - CSW01_04655 0.26 +1.8
967,592 - CSW01_04655 0.26 +1.2
967,592 - CSW01_04655 0.26 +0.4
967,592 - CSW01_04655 0.26 +0.7
967,592 - CSW01_04655 0.26 +0.3
967,676 - CSW01_04655 0.35 +0.0
967,717 - CSW01_04655 0.40 -0.1
967,739 + CSW01_04655 0.42 -0.3
967,739 + CSW01_04655 0.42 -1.4
967,756 + CSW01_04655 0.44 +0.1
967,757 - CSW01_04655 0.44 -0.6
967,764 + CSW01_04655 0.45 +0.8
967,769 - CSW01_04655 0.45 +0.6
967,769 - CSW01_04655 0.45 +1.0
967,776 - CSW01_04655 0.46 +0.1
967,823 - CSW01_04655 0.51 -0.7
967,851 - CSW01_04655 0.54 +0.0
967,910 + CSW01_04655 0.60 +0.1
967,929 - CSW01_04655 0.62 +0.5
968,080 + CSW01_04655 0.78 -0.3
968,133 + CSW01_04655 0.83 +2.3
968,241 + -0.6
968,246 + +2.5
968,246 + +0.3
968,246 + -0.3
968,246 + +0.2
968,246 + +0.6
968,246 + +0.1
968,246 + +0.7
968,246 + -1.2
968,246 + +0.2
968,246 + +0.4
968,254 - +0.0
968,254 - +0.5
968,254 - -0.8
968,254 - -0.5
968,254 - +1.8
968,254 - -0.2
968,298 - -0.5
968,299 - -0.3
968,492 + -0.4
968,541 + -0.4
968,591 - +0.4
968,629 + -0.9
968,646 + -0.9
968,652 + -0.3
968,683 + CSW01_04660 0.11 -1.1
968,703 - CSW01_04660 0.12 +1.2
968,857 + CSW01_04660 0.23 -0.5
968,911 + CSW01_04660 0.27 +0.1
968,996 - CSW01_04660 0.33 -0.7
969,104 + CSW01_04660 0.40 -0.7
969,104 + CSW01_04660 0.40 -0.8
969,112 - CSW01_04660 0.41 -0.6
969,119 - CSW01_04660 0.41 -0.1
969,154 - CSW01_04660 0.44 -0.3
969,228 + CSW01_04660 0.49 -1.7
969,236 - CSW01_04660 0.49 -0.1
969,241 + CSW01_04660 0.50 -0.6
969,249 - CSW01_04660 0.50 -2.6
969,249 - CSW01_04660 0.50 -0.8
969,250 + CSW01_04660 0.50 -1.5
969,256 + CSW01_04660 0.51 -0.8
969,264 - CSW01_04660 0.51 -0.2
969,264 - CSW01_04660 0.51 -1.8

Or see this region's nucleotide sequence