Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03650

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03640 and CSW01_03645 are separated by 66 nucleotidesCSW01_03645 and CSW01_03650 are separated by 110 nucleotidesCSW01_03650 and CSW01_03655 are separated by 361 nucleotides CSW01_03640: CSW01_03640 - bifunctional chorismate mutase/prephenate dehydrogenase, at 743,364 to 744,491 _03640 CSW01_03645: CSW01_03645 - PilZ domain-containing protein, at 744,558 to 744,989 _03645 CSW01_03650: CSW01_03650 - energy-dependent translational throttle protein EttA, at 745,100 to 746,767 _03650 CSW01_03655: CSW01_03655 - murein transglycosylase, at 747,129 to 749,075 _03655 Position (kb) 745 746 747Strain fitness (log2 ratio) -2 -1 0 1 2at 744.106 kb on + strand, within CSW01_03640at 744.162 kb on - strand, within CSW01_03640at 744.220 kb on + strand, within CSW01_03640at 744.233 kb on - strand, within CSW01_03640at 744.405 kb on - strandat 744.405 kb on - strandat 744.486 kb on + strandat 744.486 kb on + strandat 744.494 kb on - strandat 744.494 kb on - strandat 744.524 kb on + strandat 744.578 kb on - strandat 744.640 kb on - strand, within CSW01_03645at 744.658 kb on - strand, within CSW01_03645at 744.728 kb on + strand, within CSW01_03645at 744.811 kb on - strand, within CSW01_03645at 744.811 kb on - strand, within CSW01_03645at 744.811 kb on - strand, within CSW01_03645at 744.811 kb on - strand, within CSW01_03645at 744.813 kb on + strand, within CSW01_03645at 744.847 kb on + strand, within CSW01_03645at 744.872 kb on + strand, within CSW01_03645at 744.872 kb on + strand, within CSW01_03645at 744.872 kb on + strand, within CSW01_03645at 744.872 kb on + strand, within CSW01_03645at 744.875 kb on - strand, within CSW01_03645at 744.876 kb on - strand, within CSW01_03645at 744.987 kb on - strandat 745.049 kb on + strandat 745.103 kb on - strandat 745.181 kb on - strandat 745.228 kb on + strandat 745.282 kb on + strand, within CSW01_03650at 745.282 kb on + strand, within CSW01_03650at 745.290 kb on - strand, within CSW01_03650at 745.331 kb on + strand, within CSW01_03650at 745.413 kb on + strand, within CSW01_03650at 745.413 kb on + strand, within CSW01_03650at 745.413 kb on + strand, within CSW01_03650at 745.421 kb on - strand, within CSW01_03650at 745.421 kb on - strand, within CSW01_03650at 745.425 kb on + strand, within CSW01_03650at 745.425 kb on + strand, within CSW01_03650at 745.425 kb on + strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.477 kb on + strand, within CSW01_03650at 745.512 kb on - strand, within CSW01_03650at 745.523 kb on + strand, within CSW01_03650at 745.622 kb on - strand, within CSW01_03650at 745.700 kb on - strand, within CSW01_03650at 745.756 kb on + strand, within CSW01_03650at 745.948 kb on - strand, within CSW01_03650at 746.114 kb on + strand, within CSW01_03650at 746.279 kb on - strand, within CSW01_03650at 746.282 kb on + strand, within CSW01_03650at 746.333 kb on + strand, within CSW01_03650at 746.341 kb on - strand, within CSW01_03650at 746.341 kb on - strand, within CSW01_03650at 746.341 kb on - strand, within CSW01_03650at 746.380 kb on - strand, within CSW01_03650at 746.393 kb on - strand, within CSW01_03650at 746.417 kb on + strand, within CSW01_03650at 746.419 kb on - strand, within CSW01_03650at 746.442 kb on + strand, within CSW01_03650at 746.442 kb on + strand, within CSW01_03650at 746.449 kb on - strand, within CSW01_03650at 746.450 kb on - strand, within CSW01_03650at 746.514 kb on + strand, within CSW01_03650at 746.514 kb on + strand, within CSW01_03650at 746.514 kb on + strand, within CSW01_03650at 746.522 kb on - strand, within CSW01_03650at 746.522 kb on - strand, within CSW01_03650at 746.522 kb on - strand, within CSW01_03650at 746.565 kb on - strand, within CSW01_03650at 746.594 kb on - strand, within CSW01_03650at 746.651 kb on - strandat 746.727 kb on + strandat 746.730 kb on - strandat 746.730 kb on - strandat 746.747 kb on + strandat 746.748 kb on + strandat 746.785 kb on - strandat 746.803 kb on - strandat 747.055 kb on + strandat 747.063 kb on - strandat 747.109 kb on + strandat 747.153 kb on - strandat 747.179 kb on - strandat 747.196 kb on - strandat 747.196 kb on - strandat 747.212 kb on + strandat 747.243 kb on + strandat 747.263 kb on + strandat 747.330 kb on - strand, within CSW01_03655at 747.336 kb on - strand, within CSW01_03655at 747.412 kb on + strand, within CSW01_03655at 747.454 kb on + strand, within CSW01_03655at 747.471 kb on - strand, within CSW01_03655at 747.572 kb on + strand, within CSW01_03655at 747.572 kb on + strand, within CSW01_03655at 747.592 kb on - strand, within CSW01_03655at 747.634 kb on + strand, within CSW01_03655at 747.682 kb on + strand, within CSW01_03655at 747.728 kb on - strand, within CSW01_03655

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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744,106 + CSW01_03640 0.66 +0.9
744,162 - CSW01_03640 0.71 +0.3
744,220 + CSW01_03640 0.76 +0.2
744,233 - CSW01_03640 0.77 -0.5
744,405 - -1.7
744,405 - +1.9
744,486 + +0.3
744,486 + +1.6
744,494 - -0.1
744,494 - +0.2
744,524 + +0.9
744,578 - -0.5
744,640 - CSW01_03645 0.19 +0.5
744,658 - CSW01_03645 0.23 +0.9
744,728 + CSW01_03645 0.39 -0.0
744,811 - CSW01_03645 0.59 +0.4
744,811 - CSW01_03645 0.59 -0.5
744,811 - CSW01_03645 0.59 +0.0
744,811 - CSW01_03645 0.59 +0.1
744,813 + CSW01_03645 0.59 -1.0
744,847 + CSW01_03645 0.67 +0.2
744,872 + CSW01_03645 0.73 +0.1
744,872 + CSW01_03645 0.73 +0.1
744,872 + CSW01_03645 0.73 +0.7
744,872 + CSW01_03645 0.73 -0.0
744,875 - CSW01_03645 0.73 -0.6
744,876 - CSW01_03645 0.74 +1.5
744,987 - -0.2
745,049 + -0.8
745,103 - -1.0
745,181 - +0.6
745,228 + +1.9
745,282 + CSW01_03650 0.11 -0.4
745,282 + CSW01_03650 0.11 +0.0
745,290 - CSW01_03650 0.11 +0.5
745,331 + CSW01_03650 0.14 +0.9
745,413 + CSW01_03650 0.19 -0.4
745,413 + CSW01_03650 0.19 -0.5
745,413 + CSW01_03650 0.19 -1.0
745,421 - CSW01_03650 0.19 -0.3
745,421 - CSW01_03650 0.19 +1.0
745,425 + CSW01_03650 0.19 +0.0
745,425 + CSW01_03650 0.19 -0.2
745,425 + CSW01_03650 0.19 -0.2
745,433 - CSW01_03650 0.20 -0.7
745,433 - CSW01_03650 0.20 -0.6
745,433 - CSW01_03650 0.20 +0.2
745,433 - CSW01_03650 0.20 +0.8
745,433 - CSW01_03650 0.20 +0.3
745,477 + CSW01_03650 0.23 +0.6
745,512 - CSW01_03650 0.25 -0.2
745,523 + CSW01_03650 0.25 +0.0
745,622 - CSW01_03650 0.31 +0.9
745,700 - CSW01_03650 0.36 +0.7
745,756 + CSW01_03650 0.39 -0.2
745,948 - CSW01_03650 0.51 -0.4
746,114 + CSW01_03650 0.61 -0.3
746,279 - CSW01_03650 0.71 +1.3
746,282 + CSW01_03650 0.71 -0.7
746,333 + CSW01_03650 0.74 -0.7
746,341 - CSW01_03650 0.74 -0.0
746,341 - CSW01_03650 0.74 +0.1
746,341 - CSW01_03650 0.74 +0.0
746,380 - CSW01_03650 0.77 -1.0
746,393 - CSW01_03650 0.78 +2.0
746,417 + CSW01_03650 0.79 +0.9
746,419 - CSW01_03650 0.79 +0.0
746,442 + CSW01_03650 0.80 +0.5
746,442 + CSW01_03650 0.80 -0.1
746,449 - CSW01_03650 0.81 +0.3
746,450 - CSW01_03650 0.81 +0.5
746,514 + CSW01_03650 0.85 -0.3
746,514 + CSW01_03650 0.85 +0.5
746,514 + CSW01_03650 0.85 +0.4
746,522 - CSW01_03650 0.85 +0.0
746,522 - CSW01_03650 0.85 +0.1
746,522 - CSW01_03650 0.85 +0.5
746,565 - CSW01_03650 0.88 +0.3
746,594 - CSW01_03650 0.90 -1.7
746,651 - +0.3
746,727 + -2.1
746,730 - +0.4
746,730 - +0.1
746,747 + +0.4
746,748 + +0.6
746,785 - +1.9
746,803 - -0.2
747,055 + +0.2
747,063 - +0.8
747,109 + +0.3
747,153 - -0.5
747,179 - -0.2
747,196 - +0.2
747,196 - -0.6
747,212 + +0.9
747,243 + +0.4
747,263 + +0.1
747,330 - CSW01_03655 0.10 +1.3
747,336 - CSW01_03655 0.11 +0.7
747,412 + CSW01_03655 0.15 +0.4
747,454 + CSW01_03655 0.17 +0.1
747,471 - CSW01_03655 0.18 -0.3
747,572 + CSW01_03655 0.23 +0.3
747,572 + CSW01_03655 0.23 +0.0
747,592 - CSW01_03655 0.24 +1.1
747,634 + CSW01_03655 0.26 +1.9
747,682 + CSW01_03655 0.28 -1.2
747,728 - CSW01_03655 0.31 -0.1

Or see this region's nucleotide sequence