Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03120

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03115 and CSW01_03120 are separated by 383 nucleotidesCSW01_03120 and CSW01_03125 are separated by 5 nucleotidesCSW01_03125 and CSW01_03130 are separated by 63 nucleotides CSW01_03115: CSW01_03115 - SulP family inorganic anion transporter, at 613,638 to 615,284 _03115 CSW01_03120: CSW01_03120 - ABC transporter ATP-binding protein, at 615,668 to 616,585 _03120 CSW01_03125: CSW01_03125 - ABC transporter permease, at 616,591 to 617,361 _03125 CSW01_03130: CSW01_03130 - pantoate--beta-alanine ligase, at 617,425 to 618,306 _03130 Position (kb) 615 616 617Strain fitness (log2 ratio) -2 -1 0 1 2at 614.669 kb on + strand, within CSW01_03115at 614.682 kb on - strand, within CSW01_03115at 614.694 kb on - strand, within CSW01_03115at 614.694 kb on - strand, within CSW01_03115at 614.767 kb on + strand, within CSW01_03115at 614.767 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.812 kb on + strand, within CSW01_03115at 614.820 kb on - strand, within CSW01_03115at 614.820 kb on - strand, within CSW01_03115at 614.820 kb on - strand, within CSW01_03115at 614.850 kb on + strand, within CSW01_03115at 614.850 kb on + strand, within CSW01_03115at 614.885 kb on - strand, within CSW01_03115at 614.898 kb on + strand, within CSW01_03115at 614.926 kb on - strand, within CSW01_03115at 614.938 kb on - strand, within CSW01_03115at 614.950 kb on - strand, within CSW01_03115at 614.961 kb on + strand, within CSW01_03115at 614.961 kb on - strand, within CSW01_03115at 614.966 kb on + strand, within CSW01_03115at 614.985 kb on - strand, within CSW01_03115at 615.026 kb on + strand, within CSW01_03115at 615.031 kb on - strand, within CSW01_03115at 615.149 kb on + strandat 615.202 kb on - strandat 615.236 kb on - strandat 615.272 kb on + strandat 615.280 kb on - strandat 615.280 kb on - strandat 615.362 kb on - strandat 615.389 kb on + strandat 615.397 kb on - strandat 615.444 kb on + strandat 615.658 kb on + strandat 615.675 kb on - strandat 615.738 kb on + strandat 615.740 kb on - strandat 615.772 kb on + strand, within CSW01_03120at 615.778 kb on - strand, within CSW01_03120at 615.780 kb on - strand, within CSW01_03120at 615.804 kb on + strand, within CSW01_03120at 615.829 kb on + strand, within CSW01_03120at 615.862 kb on - strand, within CSW01_03120at 616.009 kb on - strand, within CSW01_03120at 616.113 kb on + strand, within CSW01_03120at 616.185 kb on - strand, within CSW01_03120at 616.185 kb on - strand, within CSW01_03120at 616.350 kb on - strand, within CSW01_03120at 616.417 kb on + strand, within CSW01_03120at 616.500 kb on + strandat 616.544 kb on - strandat 616.561 kb on + strandat 616.746 kb on + strand, within CSW01_03125at 616.768 kb on + strand, within CSW01_03125at 616.781 kb on - strand, within CSW01_03125at 616.852 kb on - strand, within CSW01_03125at 616.896 kb on - strand, within CSW01_03125at 616.896 kb on - strand, within CSW01_03125at 616.920 kb on - strand, within CSW01_03125at 617.107 kb on + strand, within CSW01_03125at 617.133 kb on + strand, within CSW01_03125at 617.305 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.310 kb on + strandat 617.313 kb on - strandat 617.313 kb on - strandat 617.313 kb on - strandat 617.313 kb on - strandat 617.313 kb on - strandat 617.315 kb on - strandat 617.318 kb on - strandat 617.318 kb on - strandat 617.355 kb on - strandat 617.383 kb on + strandat 617.383 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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614,669 + CSW01_03115 0.63 +0.5
614,682 - CSW01_03115 0.63 +0.3
614,694 - CSW01_03115 0.64 -0.8
614,694 - CSW01_03115 0.64 -0.0
614,767 + CSW01_03115 0.69 -1.0
614,767 + CSW01_03115 0.69 +0.4
614,812 + CSW01_03115 0.71 -0.3
614,812 + CSW01_03115 0.71 +0.0
614,812 + CSW01_03115 0.71 -0.4
614,812 + CSW01_03115 0.71 +0.3
614,812 + CSW01_03115 0.71 +0.7
614,820 - CSW01_03115 0.72 +0.0
614,820 - CSW01_03115 0.72 +1.4
614,820 - CSW01_03115 0.72 +0.0
614,850 + CSW01_03115 0.74 +0.3
614,850 + CSW01_03115 0.74 +0.3
614,885 - CSW01_03115 0.76 +0.5
614,898 + CSW01_03115 0.77 +0.2
614,926 - CSW01_03115 0.78 +0.4
614,938 - CSW01_03115 0.79 -0.5
614,950 - CSW01_03115 0.80 -0.1
614,961 + CSW01_03115 0.80 -1.7
614,961 - CSW01_03115 0.80 -0.0
614,966 + CSW01_03115 0.81 -1.3
614,985 - CSW01_03115 0.82 +0.9
615,026 + CSW01_03115 0.84 -0.9
615,031 - CSW01_03115 0.85 -0.1
615,149 + -0.4
615,202 - -0.7
615,236 - +0.2
615,272 + +0.2
615,280 - +0.1
615,280 - +2.6
615,362 - +0.0
615,389 + -0.6
615,397 - -0.1
615,444 + +0.1
615,658 + -0.2
615,675 - +1.0
615,738 + -1.7
615,740 - -1.5
615,772 + CSW01_03120 0.11 -0.3
615,778 - CSW01_03120 0.12 +1.3
615,780 - CSW01_03120 0.12 -1.7
615,804 + CSW01_03120 0.15 +0.3
615,829 + CSW01_03120 0.18 +0.3
615,862 - CSW01_03120 0.21 -0.1
616,009 - CSW01_03120 0.37 +0.5
616,113 + CSW01_03120 0.48 -2.2
616,185 - CSW01_03120 0.56 +2.5
616,185 - CSW01_03120 0.56 -1.9
616,350 - CSW01_03120 0.74 +0.1
616,417 + CSW01_03120 0.82 -1.1
616,500 + +0.6
616,544 - +0.9
616,561 + +0.2
616,746 + CSW01_03125 0.20 +1.3
616,768 + CSW01_03125 0.23 +0.0
616,781 - CSW01_03125 0.25 +0.3
616,852 - CSW01_03125 0.34 -0.9
616,896 - CSW01_03125 0.40 +0.0
616,896 - CSW01_03125 0.40 +1.6
616,920 - CSW01_03125 0.43 +0.3
617,107 + CSW01_03125 0.67 +0.3
617,133 + CSW01_03125 0.70 +1.7
617,305 + -0.3
617,310 + -0.3
617,310 + -0.8
617,310 + +0.2
617,310 + -0.2
617,310 + -0.7
617,310 + -0.1
617,310 + -0.3
617,313 - -0.6
617,313 - -0.4
617,313 - -0.4
617,313 - -1.4
617,313 - +0.8
617,315 - +1.5
617,318 - +0.2
617,318 - -1.0
617,355 - +0.1
617,383 + +0.6
617,383 + -0.2

Or see this region's nucleotide sequence