Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01870

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01865 and CSW01_01870 are separated by 136 nucleotidesCSW01_01870 and CSW01_01875 are separated by 198 nucleotidesCSW01_01875 and CSW01_01880 overlap by 4 nucleotides CSW01_01865: CSW01_01865 - hypothetical protein, at 373,211 to 374,194 _01865 CSW01_01870: CSW01_01870 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 374,331 to 375,110 _01870 CSW01_01875: CSW01_01875 - hypothetical protein, at 375,309 to 376,031 _01875 CSW01_01880: CSW01_01880 - sulfurtransferase TusD, at 376,028 to 376,423 _01880 Position (kb) 374 375 376Strain fitness (log2 ratio) -1 0 1 2at 373.369 kb on - strand, within CSW01_01865at 373.382 kb on + strand, within CSW01_01865at 373.477 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.482 kb on + strand, within CSW01_01865at 373.485 kb on - strand, within CSW01_01865at 373.490 kb on - strand, within CSW01_01865at 373.615 kb on - strand, within CSW01_01865at 373.625 kb on - strand, within CSW01_01865at 373.653 kb on + strand, within CSW01_01865at 373.695 kb on + strand, within CSW01_01865at 373.742 kb on + strand, within CSW01_01865at 373.750 kb on - strand, within CSW01_01865at 373.810 kb on + strand, within CSW01_01865at 373.810 kb on + strand, within CSW01_01865at 373.818 kb on - strand, within CSW01_01865at 373.818 kb on - strand, within CSW01_01865at 373.831 kb on - strand, within CSW01_01865at 373.905 kb on - strand, within CSW01_01865at 373.950 kb on + strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.958 kb on - strand, within CSW01_01865at 373.963 kb on - strand, within CSW01_01865at 374.029 kb on + strand, within CSW01_01865at 374.034 kb on + strand, within CSW01_01865at 374.039 kb on + strand, within CSW01_01865at 374.042 kb on - strand, within CSW01_01865at 374.078 kb on + strand, within CSW01_01865at 374.171 kb on - strandat 374.221 kb on + strandat 374.459 kb on + strand, within CSW01_01870at 374.459 kb on + strand, within CSW01_01870at 374.467 kb on - strand, within CSW01_01870at 374.584 kb on + strand, within CSW01_01870at 374.584 kb on + strand, within CSW01_01870at 374.592 kb on - strand, within CSW01_01870at 374.594 kb on + strand, within CSW01_01870at 374.625 kb on + strand, within CSW01_01870at 374.633 kb on - strand, within CSW01_01870at 374.681 kb on + strand, within CSW01_01870at 374.760 kb on - strand, within CSW01_01870at 374.792 kb on + strand, within CSW01_01870at 374.801 kb on - strand, within CSW01_01870at 374.808 kb on - strand, within CSW01_01870at 374.826 kb on + strand, within CSW01_01870at 374.836 kb on - strand, within CSW01_01870at 374.864 kb on + strand, within CSW01_01870at 374.895 kb on - strand, within CSW01_01870at 374.907 kb on + strand, within CSW01_01870at 374.915 kb on - strand, within CSW01_01870at 374.952 kb on - strand, within CSW01_01870at 374.974 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.008 kb on + strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.016 kb on - strand, within CSW01_01870at 375.139 kb on + strandat 375.166 kb on - strandat 375.167 kb on - strandat 375.177 kb on - strandat 375.297 kb on + strandat 375.307 kb on + strandat 375.472 kb on + strand, within CSW01_01875at 375.472 kb on + strand, within CSW01_01875at 375.655 kb on + strand, within CSW01_01875at 375.690 kb on + strand, within CSW01_01875at 375.690 kb on + strand, within CSW01_01875at 375.690 kb on + strand, within CSW01_01875at 375.970 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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373,369 - CSW01_01865 0.16 +1.1
373,382 + CSW01_01865 0.17 +0.3
373,477 + CSW01_01865 0.27 +0.7
373,482 + CSW01_01865 0.28 -0.6
373,482 + CSW01_01865 0.28 -0.0
373,482 + CSW01_01865 0.28 +0.5
373,482 + CSW01_01865 0.28 +0.7
373,482 + CSW01_01865 0.28 +0.5
373,485 - CSW01_01865 0.28 +0.1
373,490 - CSW01_01865 0.28 +0.4
373,615 - CSW01_01865 0.41 +0.7
373,625 - CSW01_01865 0.42 +0.3
373,653 + CSW01_01865 0.45 -0.1
373,695 + CSW01_01865 0.49 -0.7
373,742 + CSW01_01865 0.54 -1.2
373,750 - CSW01_01865 0.55 +0.0
373,810 + CSW01_01865 0.61 +0.1
373,810 + CSW01_01865 0.61 +0.4
373,818 - CSW01_01865 0.62 +0.2
373,818 - CSW01_01865 0.62 -0.3
373,831 - CSW01_01865 0.63 +1.2
373,905 - CSW01_01865 0.71 +0.3
373,950 + CSW01_01865 0.75 +0.1
373,958 - CSW01_01865 0.76 -0.8
373,958 - CSW01_01865 0.76 -0.0
373,958 - CSW01_01865 0.76 +0.8
373,958 - CSW01_01865 0.76 +1.2
373,958 - CSW01_01865 0.76 -0.7
373,963 - CSW01_01865 0.76 +0.5
374,029 + CSW01_01865 0.83 +0.0
374,034 + CSW01_01865 0.84 +0.1
374,039 + CSW01_01865 0.84 +0.1
374,042 - CSW01_01865 0.84 +0.5
374,078 + CSW01_01865 0.88 +0.8
374,171 - -0.4
374,221 + -0.5
374,459 + CSW01_01870 0.16 +0.4
374,459 + CSW01_01870 0.16 +0.0
374,467 - CSW01_01870 0.17 +1.0
374,584 + CSW01_01870 0.32 +0.3
374,584 + CSW01_01870 0.32 +0.7
374,592 - CSW01_01870 0.33 +0.9
374,594 + CSW01_01870 0.34 -0.0
374,625 + CSW01_01870 0.38 +2.4
374,633 - CSW01_01870 0.39 +0.9
374,681 + CSW01_01870 0.45 +0.7
374,760 - CSW01_01870 0.55 -0.9
374,792 + CSW01_01870 0.59 +0.6
374,801 - CSW01_01870 0.60 +0.5
374,808 - CSW01_01870 0.61 -1.4
374,826 + CSW01_01870 0.63 +0.3
374,836 - CSW01_01870 0.65 +0.6
374,864 + CSW01_01870 0.68 -0.1
374,895 - CSW01_01870 0.72 +1.7
374,907 + CSW01_01870 0.74 +2.6
374,915 - CSW01_01870 0.75 +0.2
374,952 - CSW01_01870 0.80 +1.9
374,974 + CSW01_01870 0.82 -0.0
375,008 + CSW01_01870 0.87 +0.4
375,008 + CSW01_01870 0.87 +0.5
375,008 + CSW01_01870 0.87 +0.9
375,008 + CSW01_01870 0.87 -0.6
375,008 + CSW01_01870 0.87 -0.6
375,016 - CSW01_01870 0.88 +0.3
375,016 - CSW01_01870 0.88 -1.2
375,016 - CSW01_01870 0.88 +0.8
375,016 - CSW01_01870 0.88 -0.0
375,016 - CSW01_01870 0.88 +2.0
375,016 - CSW01_01870 0.88 +0.5
375,139 + +0.1
375,166 - +0.6
375,167 - +0.2
375,177 - +0.2
375,297 + -0.7
375,307 + +0.9
375,472 + CSW01_01875 0.23 -0.1
375,472 + CSW01_01875 0.23 +1.3
375,655 + CSW01_01875 0.48 +0.2
375,690 + CSW01_01875 0.53 -0.4
375,690 + CSW01_01875 0.53 +0.1
375,690 + CSW01_01875 0.53 -0.1
375,970 + +0.7

Or see this region's nucleotide sequence