Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01475

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01470 and CSW01_01475 are separated by 153 nucleotidesCSW01_01475 and CSW01_01480 overlap by 4 nucleotides CSW01_01470: CSW01_01470 - permease, at 293,577 to 294,953 _01470 CSW01_01475: CSW01_01475 - gluconate kinase, at 295,107 to 295,622 _01475 CSW01_01480: CSW01_01480 - phosphogluconate dehydratase, at 295,619 to 297,415 _01480 Position (kb) 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 294.115 kb on + strand, within CSW01_01470at 294.115 kb on + strand, within CSW01_01470at 294.115 kb on + strand, within CSW01_01470at 294.123 kb on - strand, within CSW01_01470at 294.184 kb on - strand, within CSW01_01470at 294.220 kb on + strand, within CSW01_01470at 294.224 kb on + strand, within CSW01_01470at 294.234 kb on + strand, within CSW01_01470at 294.235 kb on + strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.243 kb on - strand, within CSW01_01470at 294.243 kb on - strand, within CSW01_01470at 294.260 kb on + strand, within CSW01_01470at 294.260 kb on + strand, within CSW01_01470at 294.268 kb on - strand, within CSW01_01470at 294.268 kb on - strand, within CSW01_01470at 294.352 kb on + strand, within CSW01_01470at 294.415 kb on + strand, within CSW01_01470at 294.420 kb on + strand, within CSW01_01470at 294.433 kb on - strand, within CSW01_01470at 294.458 kb on + strand, within CSW01_01470at 294.465 kb on + strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.468 kb on + strand, within CSW01_01470at 294.490 kb on + strand, within CSW01_01470at 294.490 kb on + strand, within CSW01_01470at 294.507 kb on + strand, within CSW01_01470at 294.575 kb on + strand, within CSW01_01470at 294.610 kb on + strand, within CSW01_01470at 294.692 kb on - strand, within CSW01_01470at 294.724 kb on - strand, within CSW01_01470at 294.739 kb on + strand, within CSW01_01470at 294.817 kb on + strandat 294.934 kb on - strandat 294.968 kb on + strandat 295.099 kb on - strandat 295.136 kb on + strandat 295.221 kb on - strand, within CSW01_01475at 295.221 kb on - strand, within CSW01_01475at 295.245 kb on + strand, within CSW01_01475at 295.293 kb on - strand, within CSW01_01475at 295.347 kb on - strand, within CSW01_01475at 295.349 kb on - strand, within CSW01_01475at 295.426 kb on + strand, within CSW01_01475at 295.461 kb on + strand, within CSW01_01475at 295.461 kb on + strand, within CSW01_01475at 295.469 kb on - strand, within CSW01_01475at 295.469 kb on - strand, within CSW01_01475at 295.484 kb on + strand, within CSW01_01475at 295.509 kb on + strand, within CSW01_01475at 295.510 kb on + strand, within CSW01_01475at 295.510 kb on + strand, within CSW01_01475at 295.510 kb on - strand, within CSW01_01475at 295.518 kb on - strand, within CSW01_01475at 295.518 kb on - strand, within CSW01_01475at 295.520 kb on + strand, within CSW01_01475at 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.575 kb on + strandat 295.580 kb on + strandat 295.583 kb on - strandat 295.605 kb on + strandat 295.615 kb on - strandat 295.641 kb on + strandat 295.663 kb on + strandat 295.709 kb on - strandat 295.726 kb on + strandat 295.734 kb on + strandat 295.751 kb on + strandat 295.751 kb on + strandat 295.759 kb on - strandat 295.818 kb on + strand, within CSW01_01480at 295.847 kb on + strand, within CSW01_01480at 295.860 kb on - strand, within CSW01_01480at 295.861 kb on + strand, within CSW01_01480at 295.874 kb on - strand, within CSW01_01480at 295.876 kb on + strand, within CSW01_01480at 295.879 kb on - strand, within CSW01_01480at 295.879 kb on - strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.881 kb on + strand, within CSW01_01480at 295.884 kb on - strand, within CSW01_01480at 295.884 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.889 kb on - strand, within CSW01_01480at 295.909 kb on - strand, within CSW01_01480at 295.915 kb on + strand, within CSW01_01480at 295.964 kb on - strand, within CSW01_01480at 295.973 kb on + strand, within CSW01_01480at 296.018 kb on + strand, within CSW01_01480at 296.043 kb on + strand, within CSW01_01480at 296.051 kb on - strand, within CSW01_01480at 296.051 kb on - strand, within CSW01_01480at 296.127 kb on + strand, within CSW01_01480at 296.127 kb on - strand, within CSW01_01480at 296.227 kb on + strand, within CSW01_01480at 296.227 kb on - strand, within CSW01_01480at 296.235 kb on - strand, within CSW01_01480at 296.242 kb on + strand, within CSW01_01480at 296.242 kb on + strand, within CSW01_01480at 296.250 kb on - strand, within CSW01_01480at 296.250 kb on - strand, within CSW01_01480at 296.250 kb on - strand, within CSW01_01480at 296.254 kb on + strand, within CSW01_01480at 296.254 kb on + strand, within CSW01_01480at 296.260 kb on + strand, within CSW01_01480at 296.260 kb on + strand, within CSW01_01480at 296.262 kb on - strand, within CSW01_01480at 296.280 kb on + strand, within CSW01_01480at 296.333 kb on + strand, within CSW01_01480at 296.333 kb on + strand, within CSW01_01480at 296.333 kb on + strand, within CSW01_01480at 296.336 kb on - strand, within CSW01_01480at 296.433 kb on + strand, within CSW01_01480at 296.434 kb on - strand, within CSW01_01480at 296.438 kb on + strand, within CSW01_01480at 296.441 kb on - strand, within CSW01_01480at 296.443 kb on + strand, within CSW01_01480at 296.446 kb on - strand, within CSW01_01480at 296.451 kb on - strand, within CSW01_01480at 296.463 kb on - strand, within CSW01_01480at 296.463 kb on - strand, within CSW01_01480at 296.506 kb on + strand, within CSW01_01480at 296.509 kb on - strand, within CSW01_01480at 296.520 kb on + strand, within CSW01_01480at 296.524 kb on + strand, within CSW01_01480at 296.534 kb on + strand, within CSW01_01480at 296.534 kb on + strand, within CSW01_01480at 296.534 kb on + strand, within CSW01_01480at 296.542 kb on - strand, within CSW01_01480at 296.542 kb on - strand, within CSW01_01480at 296.589 kb on + strand, within CSW01_01480at 296.589 kb on + strand, within CSW01_01480at 296.597 kb on - strand, within CSW01_01480

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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294,115 + CSW01_01470 0.39 -0.6
294,115 + CSW01_01470 0.39 -0.7
294,115 + CSW01_01470 0.39 +0.3
294,123 - CSW01_01470 0.40 +0.1
294,184 - CSW01_01470 0.44 -1.4
294,220 + CSW01_01470 0.47 -0.2
294,224 + CSW01_01470 0.47 +1.4
294,234 + CSW01_01470 0.48 +0.2
294,235 + CSW01_01470 0.48 +0.6
294,242 - CSW01_01470 0.48 +0.7
294,242 - CSW01_01470 0.48 -0.1
294,242 - CSW01_01470 0.48 +0.2
294,242 - CSW01_01470 0.48 +0.8
294,243 - CSW01_01470 0.48 -0.9
294,243 - CSW01_01470 0.48 -0.2
294,260 + CSW01_01470 0.50 +0.9
294,260 + CSW01_01470 0.50 -0.5
294,268 - CSW01_01470 0.50 +0.4
294,268 - CSW01_01470 0.50 +0.1
294,352 + CSW01_01470 0.56 -0.2
294,415 + CSW01_01470 0.61 +0.3
294,420 + CSW01_01470 0.61 -0.2
294,433 - CSW01_01470 0.62 -0.2
294,458 + CSW01_01470 0.64 -0.0
294,465 + CSW01_01470 0.64 -0.3
294,466 - CSW01_01470 0.65 -0.9
294,466 - CSW01_01470 0.65 -0.3
294,466 - CSW01_01470 0.65 -0.6
294,466 - CSW01_01470 0.65 -3.4
294,466 - CSW01_01470 0.65 +0.4
294,468 + CSW01_01470 0.65 -0.1
294,490 + CSW01_01470 0.66 -0.5
294,490 + CSW01_01470 0.66 -0.2
294,507 + CSW01_01470 0.68 -0.6
294,575 + CSW01_01470 0.72 -0.5
294,610 + CSW01_01470 0.75 +0.1
294,692 - CSW01_01470 0.81 -0.4
294,724 - CSW01_01470 0.83 -0.1
294,739 + CSW01_01470 0.84 -0.9
294,817 + +0.5
294,934 - -0.1
294,968 + +0.9
295,099 - -1.3
295,136 + +0.7
295,221 - CSW01_01475 0.22 -1.0
295,221 - CSW01_01475 0.22 +0.9
295,245 + CSW01_01475 0.27 -0.1
295,293 - CSW01_01475 0.36 +0.8
295,347 - CSW01_01475 0.47 -0.1
295,349 - CSW01_01475 0.47 -1.3
295,426 + CSW01_01475 0.62 +0.2
295,461 + CSW01_01475 0.69 +1.6
295,461 + CSW01_01475 0.69 +0.7
295,469 - CSW01_01475 0.70 +0.5
295,469 - CSW01_01475 0.70 -0.0
295,484 + CSW01_01475 0.73 +0.4
295,509 + CSW01_01475 0.78 +0.4
295,510 + CSW01_01475 0.78 -0.1
295,510 + CSW01_01475 0.78 -0.1
295,510 - CSW01_01475 0.78 -1.5
295,518 - CSW01_01475 0.80 +1.3
295,518 - CSW01_01475 0.80 -1.1
295,520 + CSW01_01475 0.80 -2.1
295,575 + -0.3
295,575 + -0.2
295,575 + -1.0
295,575 + +0.0
295,575 + +0.0
295,575 + +0.5
295,580 + +0.4
295,583 - +0.7
295,605 + -0.3
295,615 - -0.3
295,641 + -0.7
295,663 + +0.1
295,709 - -0.2
295,726 + +1.6
295,734 + +0.3
295,751 + +0.9
295,751 + +1.9
295,759 - +0.2
295,818 + CSW01_01480 0.11 -0.1
295,847 + CSW01_01480 0.13 +0.0
295,860 - CSW01_01480 0.13 +1.5
295,861 + CSW01_01480 0.13 +0.2
295,874 - CSW01_01480 0.14 -0.4
295,876 + CSW01_01480 0.14 +0.7
295,879 - CSW01_01480 0.14 -0.3
295,879 - CSW01_01480 0.14 -0.4
295,881 + CSW01_01480 0.15 -0.2
295,881 + CSW01_01480 0.15 -0.4
295,881 + CSW01_01480 0.15 -0.9
295,881 + CSW01_01480 0.15 +0.1
295,881 + CSW01_01480 0.15 -0.5
295,881 + CSW01_01480 0.15 +0.4
295,881 + CSW01_01480 0.15 +0.0
295,884 - CSW01_01480 0.15 -0.4
295,884 - CSW01_01480 0.15 +0.2
295,889 - CSW01_01480 0.15 -0.2
295,889 - CSW01_01480 0.15 +0.0
295,889 - CSW01_01480 0.15 +0.7
295,889 - CSW01_01480 0.15 +0.3
295,889 - CSW01_01480 0.15 +1.1
295,889 - CSW01_01480 0.15 -0.5
295,889 - CSW01_01480 0.15 +0.6
295,889 - CSW01_01480 0.15 -0.4
295,909 - CSW01_01480 0.16 +1.4
295,915 + CSW01_01480 0.16 +1.9
295,964 - CSW01_01480 0.19 -1.4
295,973 + CSW01_01480 0.20 -1.6
296,018 + CSW01_01480 0.22 -0.3
296,043 + CSW01_01480 0.24 +0.5
296,051 - CSW01_01480 0.24 +0.9
296,051 - CSW01_01480 0.24 -0.7
296,127 + CSW01_01480 0.28 -0.7
296,127 - CSW01_01480 0.28 +0.6
296,227 + CSW01_01480 0.34 -0.3
296,227 - CSW01_01480 0.34 +0.8
296,235 - CSW01_01480 0.34 -1.0
296,242 + CSW01_01480 0.35 -0.1
296,242 + CSW01_01480 0.35 -0.5
296,250 - CSW01_01480 0.35 -0.0
296,250 - CSW01_01480 0.35 -0.5
296,250 - CSW01_01480 0.35 +0.0
296,254 + CSW01_01480 0.35 +0.2
296,254 + CSW01_01480 0.35 -0.2
296,260 + CSW01_01480 0.36 -0.1
296,260 + CSW01_01480 0.36 +1.1
296,262 - CSW01_01480 0.36 -0.6
296,280 + CSW01_01480 0.37 -0.1
296,333 + CSW01_01480 0.40 -0.4
296,333 + CSW01_01480 0.40 -0.1
296,333 + CSW01_01480 0.40 +1.9
296,336 - CSW01_01480 0.40 -0.5
296,433 + CSW01_01480 0.45 +0.1
296,434 - CSW01_01480 0.45 -0.2
296,438 + CSW01_01480 0.46 -0.0
296,441 - CSW01_01480 0.46 -0.2
296,443 + CSW01_01480 0.46 -0.4
296,446 - CSW01_01480 0.46 -1.9
296,451 - CSW01_01480 0.46 +0.2
296,463 - CSW01_01480 0.47 -0.1
296,463 - CSW01_01480 0.47 -0.4
296,506 + CSW01_01480 0.49 +0.6
296,509 - CSW01_01480 0.50 -0.4
296,520 + CSW01_01480 0.50 -0.4
296,524 + CSW01_01480 0.50 +0.0
296,534 + CSW01_01480 0.51 +0.3
296,534 + CSW01_01480 0.51 -0.6
296,534 + CSW01_01480 0.51 -0.3
296,542 - CSW01_01480 0.51 +0.7
296,542 - CSW01_01480 0.51 +0.6
296,589 + CSW01_01480 0.54 -0.1
296,589 + CSW01_01480 0.54 +0.3
296,597 - CSW01_01480 0.54 -0.5

Or see this region's nucleotide sequence