Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00920

Experiment: LB_Anaerobic_120MIN_ZN12B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_00915 and CSW01_00920 are separated by 154 nucleotidesCSW01_00920 and CSW01_00925 are separated by 2 nucleotides CSW01_00915: CSW01_00915 - nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein, at 170,340 to 171,896 _00915 CSW01_00920: CSW01_00920 - ABC transporter permease, at 172,051 to 173,028 _00920 CSW01_00925: CSW01_00925 - ABC transporter permease, at 173,031 to 173,969 _00925 Position (kb) 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 171.053 kb on + strand, within CSW01_00915at 171.056 kb on + strand, within CSW01_00915at 171.056 kb on + strand, within CSW01_00915at 171.124 kb on + strand, within CSW01_00915at 171.132 kb on - strand, within CSW01_00915at 171.132 kb on - strand, within CSW01_00915at 171.132 kb on - strand, within CSW01_00915at 171.148 kb on + strand, within CSW01_00915at 171.149 kb on - strand, within CSW01_00915at 171.182 kb on + strand, within CSW01_00915at 171.217 kb on + strand, within CSW01_00915at 171.269 kb on - strand, within CSW01_00915at 171.283 kb on + strand, within CSW01_00915at 171.293 kb on + strand, within CSW01_00915at 171.337 kb on - strand, within CSW01_00915at 171.340 kb on + strand, within CSW01_00915at 171.340 kb on + strand, within CSW01_00915at 171.399 kb on + strand, within CSW01_00915at 171.401 kb on - strand, within CSW01_00915at 171.402 kb on - strand, within CSW01_00915at 171.402 kb on - strand, within CSW01_00915at 171.407 kb on - strand, within CSW01_00915at 171.412 kb on - strand, within CSW01_00915at 171.438 kb on + strand, within CSW01_00915at 171.505 kb on - strand, within CSW01_00915at 171.521 kb on + strand, within CSW01_00915at 171.521 kb on + strand, within CSW01_00915at 171.529 kb on - strand, within CSW01_00915at 171.529 kb on - strand, within CSW01_00915at 171.550 kb on - strand, within CSW01_00915at 171.616 kb on - strand, within CSW01_00915at 171.637 kb on - strand, within CSW01_00915at 171.638 kb on + strand, within CSW01_00915at 171.638 kb on + strand, within CSW01_00915at 171.638 kb on + strand, within CSW01_00915at 171.646 kb on - strand, within CSW01_00915at 171.646 kb on - strand, within CSW01_00915at 171.653 kb on - strand, within CSW01_00915at 171.700 kb on - strand, within CSW01_00915at 171.736 kb on - strand, within CSW01_00915at 171.736 kb on - strand, within CSW01_00915at 171.758 kb on - strandat 171.843 kb on + strandat 171.852 kb on + strandat 171.852 kb on + strandat 171.891 kb on + strandat 171.905 kb on - strandat 171.905 kb on - strandat 171.911 kb on + strandat 171.914 kb on - strandat 171.925 kb on + strandat 171.925 kb on + strandat 171.941 kb on - strandat 172.065 kb on + strandat 172.109 kb on + strandat 172.173 kb on - strand, within CSW01_00920at 172.198 kb on - strand, within CSW01_00920at 172.208 kb on + strand, within CSW01_00920at 172.216 kb on - strand, within CSW01_00920at 172.264 kb on + strand, within CSW01_00920at 172.272 kb on - strand, within CSW01_00920at 172.348 kb on - strand, within CSW01_00920at 172.358 kb on + strand, within CSW01_00920at 172.366 kb on - strand, within CSW01_00920at 172.371 kb on - strand, within CSW01_00920at 172.381 kb on - strand, within CSW01_00920at 172.392 kb on + strand, within CSW01_00920at 172.500 kb on + strand, within CSW01_00920at 172.510 kb on - strand, within CSW01_00920at 172.525 kb on + strand, within CSW01_00920at 172.536 kb on + strand, within CSW01_00920at 172.538 kb on + strand, within CSW01_00920at 172.564 kb on + strand, within CSW01_00920at 172.613 kb on - strand, within CSW01_00920at 172.623 kb on - strand, within CSW01_00920at 172.635 kb on + strand, within CSW01_00920at 172.690 kb on + strand, within CSW01_00920at 172.690 kb on + strand, within CSW01_00920at 172.691 kb on - strand, within CSW01_00920at 172.697 kb on + strand, within CSW01_00920at 172.698 kb on - strand, within CSW01_00920at 172.705 kb on - strand, within CSW01_00920at 172.705 kb on - strand, within CSW01_00920at 172.707 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.722 kb on + strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.730 kb on - strand, within CSW01_00920at 172.799 kb on + strand, within CSW01_00920at 172.814 kb on + strand, within CSW01_00920at 172.832 kb on - strand, within CSW01_00920at 172.833 kb on - strand, within CSW01_00920at 172.897 kb on - strand, within CSW01_00920at 172.977 kb on + strandat 172.979 kb on + strandat 173.023 kb on + strandat 173.043 kb on - strandat 173.043 kb on - strandat 173.043 kb on - strandat 173.043 kb on - strandat 173.043 kb on - strandat 173.066 kb on - strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.068 kb on + strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.076 kb on - strandat 173.092 kb on + strandat 173.100 kb on - strandat 173.100 kb on - strandat 173.125 kb on + strand, within CSW01_00925at 173.125 kb on + strand, within CSW01_00925at 173.125 kb on + strand, within CSW01_00925at 173.125 kb on + strand, within CSW01_00925at 173.133 kb on - strand, within CSW01_00925at 173.191 kb on - strand, within CSW01_00925at 173.228 kb on + strand, within CSW01_00925at 173.228 kb on + strand, within CSW01_00925at 173.228 kb on + strand, within CSW01_00925at 173.228 kb on + strand, within CSW01_00925at 173.229 kb on + strand, within CSW01_00925at 173.275 kb on + strand, within CSW01_00925at 173.313 kb on + strand, within CSW01_00925at 173.359 kb on + strand, within CSW01_00925at 173.367 kb on - strand, within CSW01_00925at 173.367 kb on - strand, within CSW01_00925at 173.367 kb on - strand, within CSW01_00925at 173.367 kb on - strand, within CSW01_00925at 173.448 kb on + strand, within CSW01_00925at 173.643 kb on - strand, within CSW01_00925at 173.659 kb on + strand, within CSW01_00925at 173.667 kb on - strand, within CSW01_00925at 173.686 kb on + strand, within CSW01_00925at 173.763 kb on - strand, within CSW01_00925at 173.781 kb on + strand, within CSW01_00925at 173.789 kb on - strand, within CSW01_00925at 173.816 kb on - strand, within CSW01_00925at 173.827 kb on + strand, within CSW01_00925at 173.964 kb on + strandat 173.964 kb on + strandat 173.964 kb on + strandat 173.972 kb on - strandat 173.972 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
remove
171,053 + CSW01_00915 0.46 -2.3
171,056 + CSW01_00915 0.46 -0.4
171,056 + CSW01_00915 0.46 -0.9
171,124 + CSW01_00915 0.50 +0.0
171,132 - CSW01_00915 0.51 +0.3
171,132 - CSW01_00915 0.51 -0.2
171,132 - CSW01_00915 0.51 -0.4
171,148 + CSW01_00915 0.52 +0.6
171,149 - CSW01_00915 0.52 -0.1
171,182 + CSW01_00915 0.54 -0.5
171,217 + CSW01_00915 0.56 +0.2
171,269 - CSW01_00915 0.60 +0.6
171,283 + CSW01_00915 0.61 -0.5
171,293 + CSW01_00915 0.61 +1.1
171,337 - CSW01_00915 0.64 -0.3
171,340 + CSW01_00915 0.64 +0.5
171,340 + CSW01_00915 0.64 -0.2
171,399 + CSW01_00915 0.68 +0.2
171,401 - CSW01_00915 0.68 +0.8
171,402 - CSW01_00915 0.68 -0.2
171,402 - CSW01_00915 0.68 -0.6
171,407 - CSW01_00915 0.69 -1.3
171,412 - CSW01_00915 0.69 -0.3
171,438 + CSW01_00915 0.71 -0.0
171,505 - CSW01_00915 0.75 -0.3
171,521 + CSW01_00915 0.76 +0.4
171,521 + CSW01_00915 0.76 -0.6
171,529 - CSW01_00915 0.76 +0.6
171,529 - CSW01_00915 0.76 +0.2
171,550 - CSW01_00915 0.78 +0.1
171,616 - CSW01_00915 0.82 +0.4
171,637 - CSW01_00915 0.83 -3.6
171,638 + CSW01_00915 0.83 +1.4
171,638 + CSW01_00915 0.83 -0.4
171,638 + CSW01_00915 0.83 +0.1
171,646 - CSW01_00915 0.84 +0.0
171,646 - CSW01_00915 0.84 -0.5
171,653 - CSW01_00915 0.84 -1.0
171,700 - CSW01_00915 0.87 +0.6
171,736 - CSW01_00915 0.90 -0.1
171,736 - CSW01_00915 0.90 -0.2
171,758 - -1.3
171,843 + -1.0
171,852 + +0.5
171,852 + -0.8
171,891 + -1.6
171,905 - +1.0
171,905 - +0.3
171,911 + -1.1
171,914 - +0.1
171,925 + +0.3
171,925 + +0.4
171,941 - -0.4
172,065 + +0.4
172,109 + +1.0
172,173 - CSW01_00920 0.12 +2.3
172,198 - CSW01_00920 0.15 -0.3
172,208 + CSW01_00920 0.16 +0.5
172,216 - CSW01_00920 0.17 -0.5
172,264 + CSW01_00920 0.22 -0.8
172,272 - CSW01_00920 0.23 -0.2
172,348 - CSW01_00920 0.30 +0.0
172,358 + CSW01_00920 0.31 -0.4
172,366 - CSW01_00920 0.32 +0.6
172,371 - CSW01_00920 0.33 -0.2
172,381 - CSW01_00920 0.34 -0.5
172,392 + CSW01_00920 0.35 -1.5
172,500 + CSW01_00920 0.46 +0.7
172,510 - CSW01_00920 0.47 -0.2
172,525 + CSW01_00920 0.48 -0.1
172,536 + CSW01_00920 0.50 -0.1
172,538 + CSW01_00920 0.50 +0.4
172,564 + CSW01_00920 0.52 -1.1
172,613 - CSW01_00920 0.57 +0.2
172,623 - CSW01_00920 0.58 -0.4
172,635 + CSW01_00920 0.60 -0.0
172,690 + CSW01_00920 0.65 -0.0
172,690 + CSW01_00920 0.65 +0.2
172,691 - CSW01_00920 0.65 -0.2
172,697 + CSW01_00920 0.66 -0.7
172,698 - CSW01_00920 0.66 -0.6
172,705 - CSW01_00920 0.67 -0.6
172,705 - CSW01_00920 0.67 +0.5
172,707 + CSW01_00920 0.67 -0.5
172,722 + CSW01_00920 0.69 -0.2
172,722 + CSW01_00920 0.69 -0.8
172,722 + CSW01_00920 0.69 +0.1
172,722 + CSW01_00920 0.69 -0.6
172,722 + CSW01_00920 0.69 -0.0
172,722 + CSW01_00920 0.69 -0.1
172,722 + CSW01_00920 0.69 -0.2
172,730 - CSW01_00920 0.69 +0.2
172,730 - CSW01_00920 0.69 +0.1
172,730 - CSW01_00920 0.69 +0.7
172,730 - CSW01_00920 0.69 -0.3
172,730 - CSW01_00920 0.69 +0.2
172,730 - CSW01_00920 0.69 -0.3
172,730 - CSW01_00920 0.69 -0.0
172,730 - CSW01_00920 0.69 -0.1
172,730 - CSW01_00920 0.69 -3.5
172,730 - CSW01_00920 0.69 +0.0
172,730 - CSW01_00920 0.69 -0.6
172,799 + CSW01_00920 0.76 +0.0
172,814 + CSW01_00920 0.78 -1.7
172,832 - CSW01_00920 0.80 -0.5
172,833 - CSW01_00920 0.80 -1.0
172,897 - CSW01_00920 0.87 -0.3
172,977 + +0.9
172,979 + -0.7
173,023 + -0.1
173,043 - +2.0
173,043 - +0.7
173,043 - +0.4
173,043 - -0.1
173,043 - +0.2
173,066 - +0.3
173,068 + +0.4
173,068 + -0.3
173,068 + +0.3
173,068 + +0.3
173,068 + -0.1
173,068 + -0.7
173,068 + +0.2
173,068 + -2.3
173,068 + -0.7
173,068 + -1.7
173,068 + -0.5
173,068 + -1.4
173,068 + +0.3
173,068 + +0.3
173,068 + -0.5
173,068 + -0.3
173,068 + +0.4
173,068 + +0.1
173,068 + -0.5
173,068 + -0.0
173,068 + -0.0
173,068 + +0.6
173,068 + -0.1
173,076 - +0.8
173,076 - +0.8
173,076 - +0.0
173,076 - -0.4
173,076 - -0.4
173,076 - -1.2
173,076 - +1.2
173,076 - -0.3
173,076 - +0.0
173,076 - -1.1
173,076 - +0.5
173,076 - -0.8
173,076 - +0.2
173,076 - -0.3
173,076 - +0.6
173,076 - +0.4
173,076 - +1.3
173,076 - -0.3
173,076 - +0.1
173,076 - -0.1
173,092 + -0.2
173,100 - -0.3
173,100 - +0.3
173,125 + CSW01_00925 0.10 -0.1
173,125 + CSW01_00925 0.10 +0.1
173,125 + CSW01_00925 0.10 +0.4
173,125 + CSW01_00925 0.10 +0.5
173,133 - CSW01_00925 0.11 -0.0
173,191 - CSW01_00925 0.17 -1.6
173,228 + CSW01_00925 0.21 -0.3
173,228 + CSW01_00925 0.21 -2.3
173,228 + CSW01_00925 0.21 -0.6
173,228 + CSW01_00925 0.21 +0.4
173,229 + CSW01_00925 0.21 -1.0
173,275 + CSW01_00925 0.26 -0.0
173,313 + CSW01_00925 0.30 -0.8
173,359 + CSW01_00925 0.35 +0.3
173,367 - CSW01_00925 0.36 +0.8
173,367 - CSW01_00925 0.36 -0.2
173,367 - CSW01_00925 0.36 +0.3
173,367 - CSW01_00925 0.36 -0.7
173,448 + CSW01_00925 0.44 -0.7
173,643 - CSW01_00925 0.65 -0.1
173,659 + CSW01_00925 0.67 -0.0
173,667 - CSW01_00925 0.68 -0.3
173,686 + CSW01_00925 0.70 -1.9
173,763 - CSW01_00925 0.78 -0.2
173,781 + CSW01_00925 0.80 -0.7
173,789 - CSW01_00925 0.81 +1.6
173,816 - CSW01_00925 0.84 +1.1
173,827 + CSW01_00925 0.85 -0.5
173,964 + +0.3
173,964 + +0.0
173,964 + +0.6
173,972 - +0.3
173,972 - -0.4

Or see this region's nucleotide sequence