Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00550

Experiment: LB_Anaerobic_120MIN_ZN12B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00545 and CSW01_00550 are separated by 176 nucleotidesCSW01_00550 and CSW01_00555 are separated by 103 nucleotides CSW01_00545: CSW01_00545 - TatD family deoxyribonuclease, at 99,868 to 100,635 _00545 CSW01_00550: CSW01_00550 - porphobilinogen synthase, at 100,812 to 101,855 _00550 CSW01_00555: CSW01_00555 - N-acetyltransferase, at 101,959 to 102,390 _00555 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1at 99.879 kb on + strandat 99.938 kb on + strandat 99.938 kb on + strandat 99.938 kb on + strandat 99.938 kb on + strandat 99.946 kb on - strand, within CSW01_00545at 99.981 kb on - strand, within CSW01_00545at 100.028 kb on - strand, within CSW01_00545at 100.072 kb on + strand, within CSW01_00545at 100.167 kb on + strand, within CSW01_00545at 100.185 kb on - strand, within CSW01_00545at 100.211 kb on + strand, within CSW01_00545at 100.211 kb on + strand, within CSW01_00545at 100.219 kb on - strand, within CSW01_00545at 100.219 kb on - strand, within CSW01_00545at 100.242 kb on + strand, within CSW01_00545at 100.250 kb on - strand, within CSW01_00545at 100.250 kb on - strand, within CSW01_00545at 100.278 kb on + strand, within CSW01_00545at 100.291 kb on + strand, within CSW01_00545at 100.352 kb on + strand, within CSW01_00545at 100.398 kb on + strand, within CSW01_00545at 100.415 kb on - strand, within CSW01_00545at 100.427 kb on - strand, within CSW01_00545at 100.429 kb on + strand, within CSW01_00545at 100.434 kb on + strand, within CSW01_00545at 100.442 kb on + strand, within CSW01_00545at 100.450 kb on - strand, within CSW01_00545at 100.453 kb on - strand, within CSW01_00545at 100.453 kb on - strand, within CSW01_00545at 100.478 kb on + strand, within CSW01_00545at 100.481 kb on - strand, within CSW01_00545at 100.483 kb on + strand, within CSW01_00545at 100.529 kb on - strand, within CSW01_00545at 100.555 kb on + strand, within CSW01_00545at 100.559 kb on + strandat 100.563 kb on - strandat 100.567 kb on - strandat 100.578 kb on + strandat 100.607 kb on + strandat 100.615 kb on - strandat 100.633 kb on + strandat 100.646 kb on - strandat 100.667 kb on + strandat 100.667 kb on + strandat 100.675 kb on - strandat 100.675 kb on - strandat 100.756 kb on + strandat 100.756 kb on + strandat 100.756 kb on + strandat 100.759 kb on - strandat 101.811 kb on + strandat 101.811 kb on + strandat 101.811 kb on + strandat 101.811 kb on + strandat 101.811 kb on + strandat 101.819 kb on - strandat 101.819 kb on - strandat 101.819 kb on - strandat 101.830 kb on - strandat 101.856 kb on + strandat 101.856 kb on + strandat 101.882 kb on + strandat 101.882 kb on + strandat 101.882 kb on + strandat 101.882 kb on + strandat 101.882 kb on + strandat 101.882 kb on + strandat 101.882 kb on + strandat 101.890 kb on - strandat 101.890 kb on - strandat 101.890 kb on - strandat 101.890 kb on - strandat 101.890 kb on - strandat 101.892 kb on + strandat 101.895 kb on - strandat 101.915 kb on + strandat 101.916 kb on + strandat 101.924 kb on - strandat 102.040 kb on + strand, within CSW01_00555at 102.043 kb on - strand, within CSW01_00555at 102.047 kb on + strand, within CSW01_00555at 102.048 kb on - strand, within CSW01_00555at 102.048 kb on - strand, within CSW01_00555at 102.178 kb on - strand, within CSW01_00555at 102.192 kb on - strand, within CSW01_00555at 102.202 kb on + strand, within CSW01_00555at 102.205 kb on - strand, within CSW01_00555at 102.205 kb on - strand, within CSW01_00555at 102.215 kb on - strand, within CSW01_00555at 102.249 kb on - strand, within CSW01_00555at 102.261 kb on - strand, within CSW01_00555at 102.290 kb on - strand, within CSW01_00555at 102.292 kb on + strand, within CSW01_00555at 102.300 kb on - strand, within CSW01_00555at 102.470 kb on + strandat 102.470 kb on + strandat 102.500 kb on - strandat 102.572 kb on - strandat 102.578 kb on + strandat 102.704 kb on + strandat 102.719 kb on + strandat 102.727 kb on - strandat 102.727 kb on - strandat 102.727 kb on - strandat 102.757 kb on - strandat 102.786 kb on - strandat 102.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12B
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99,879 + +0.1
99,938 + -0.0
99,938 + +0.2
99,938 + +0.5
99,938 + -0.8
99,946 - CSW01_00545 0.10 -0.5
99,981 - CSW01_00545 0.15 +0.3
100,028 - CSW01_00545 0.21 -0.5
100,072 + CSW01_00545 0.27 +0.1
100,167 + CSW01_00545 0.39 -0.1
100,185 - CSW01_00545 0.41 +0.2
100,211 + CSW01_00545 0.45 +0.8
100,211 + CSW01_00545 0.45 +0.2
100,219 - CSW01_00545 0.46 -0.3
100,219 - CSW01_00545 0.46 -0.4
100,242 + CSW01_00545 0.49 +0.3
100,250 - CSW01_00545 0.50 +0.2
100,250 - CSW01_00545 0.50 +1.1
100,278 + CSW01_00545 0.53 -0.3
100,291 + CSW01_00545 0.55 -0.5
100,352 + CSW01_00545 0.63 -0.4
100,398 + CSW01_00545 0.69 -2.4
100,415 - CSW01_00545 0.71 -0.4
100,427 - CSW01_00545 0.73 -1.2
100,429 + CSW01_00545 0.73 +0.3
100,434 + CSW01_00545 0.74 +0.8
100,442 + CSW01_00545 0.75 +0.7
100,450 - CSW01_00545 0.76 +0.4
100,453 - CSW01_00545 0.76 -0.1
100,453 - CSW01_00545 0.76 +0.3
100,478 + CSW01_00545 0.79 -1.2
100,481 - CSW01_00545 0.80 -0.1
100,483 + CSW01_00545 0.80 -0.1
100,529 - CSW01_00545 0.86 +0.5
100,555 + CSW01_00545 0.89 +0.3
100,559 + -0.4
100,563 - +0.9
100,567 - +0.0
100,578 + +0.8
100,607 + +0.1
100,615 - -0.3
100,633 + +1.3
100,646 - +0.8
100,667 + +1.4
100,667 + +1.2
100,675 - +0.0
100,675 - -0.5
100,756 + -0.2
100,756 + -0.3
100,756 + +0.1
100,759 - -0.5
101,811 + +0.4
101,811 + +0.4
101,811 + -0.8
101,811 + +0.4
101,811 + +0.4
101,819 - -0.5
101,819 - +0.6
101,819 - +0.1
101,830 - +0.4
101,856 + +0.8
101,856 + -0.2
101,882 + +0.2
101,882 + +0.1
101,882 + +0.3
101,882 + +0.7
101,882 + +0.2
101,882 + -0.6
101,882 + +0.7
101,890 - +0.1
101,890 - -0.5
101,890 - +0.7
101,890 - -0.6
101,890 - -0.4
101,892 + +0.1
101,895 - +0.7
101,915 + -0.0
101,916 + +0.3
101,924 - +0.6
102,040 + CSW01_00555 0.19 -0.1
102,043 - CSW01_00555 0.19 +0.9
102,047 + CSW01_00555 0.20 -1.2
102,048 - CSW01_00555 0.21 +0.3
102,048 - CSW01_00555 0.21 +0.3
102,178 - CSW01_00555 0.51 +0.0
102,192 - CSW01_00555 0.54 -0.3
102,202 + CSW01_00555 0.56 -0.2
102,205 - CSW01_00555 0.57 +0.2
102,205 - CSW01_00555 0.57 -0.7
102,215 - CSW01_00555 0.59 +0.5
102,249 - CSW01_00555 0.67 +0.4
102,261 - CSW01_00555 0.70 +0.1
102,290 - CSW01_00555 0.77 -0.2
102,292 + CSW01_00555 0.77 +0.6
102,300 - CSW01_00555 0.79 +0.1
102,470 + -0.4
102,470 + -1.6
102,500 - -0.4
102,572 - -1.0
102,578 + +0.4
102,704 + +1.3
102,719 + +0.1
102,727 - +0.1
102,727 - +0.4
102,727 - +0.3
102,757 - -0.5
102,786 - +0.8
102,797 - -0.0

Or see this region's nucleotide sequence