Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32935

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32925 and BPHYT_RS32930 are separated by 27 nucleotidesBPHYT_RS32930 and BPHYT_RS32935 are separated by 57 nucleotidesBPHYT_RS32935 and BPHYT_RS32940 are separated by 86 nucleotides BPHYT_RS32925: BPHYT_RS32925 - nitrilotriacetate monooxygenase component A, at 2,967,080 to 2,968,426 _RS32925 BPHYT_RS32930: BPHYT_RS32930 - NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein, at 2,968,454 to 2,968,900 _RS32930 BPHYT_RS32935: BPHYT_RS32935 - 3-ketoacyl-ACP reductase, at 2,968,958 to 2,969,704 _RS32935 BPHYT_RS32940: BPHYT_RS32940 - MFS transporter, at 2,969,791 to 2,970,540 _RS32940 Position (kb) 2968 2969 2970Strain fitness (log2 ratio) -1 0 1 2at 2968.300 kb on - strandat 2968.341 kb on - strandat 2968.430 kb on - strandat 2968.481 kb on + strandat 2968.751 kb on - strand, within BPHYT_RS32930at 2968.850 kb on - strand, within BPHYT_RS32930at 2968.918 kb on + strandat 2968.919 kb on - strandat 2968.967 kb on - strandat 2969.134 kb on + strand, within BPHYT_RS32935at 2969.255 kb on - strand, within BPHYT_RS32935at 2969.276 kb on - strand, within BPHYT_RS32935at 2969.309 kb on + strand, within BPHYT_RS32935at 2969.497 kb on + strand, within BPHYT_RS32935at 2970.107 kb on - strand, within BPHYT_RS32940at 2970.423 kb on + strand, within BPHYT_RS32940at 2970.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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2,968,300 - -0.9
2,968,341 - -1.5
2,968,430 - +0.4
2,968,481 + -1.0
2,968,751 - BPHYT_RS32930 0.66 -0.7
2,968,850 - BPHYT_RS32930 0.89 -0.9
2,968,918 + +1.9
2,968,919 - -0.5
2,968,967 - -1.5
2,969,134 + BPHYT_RS32935 0.24 +0.5
2,969,255 - BPHYT_RS32935 0.40 +0.7
2,969,276 - BPHYT_RS32935 0.43 +0.1
2,969,309 + BPHYT_RS32935 0.47 +1.0
2,969,497 + BPHYT_RS32935 0.72 +0.3
2,970,107 - BPHYT_RS32940 0.42 +0.1
2,970,423 + BPHYT_RS32940 0.84 -0.1
2,970,492 + -0.1

Or see this region's nucleotide sequence