Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30425

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30420 and BPHYT_RS30425 are separated by 42 nucleotidesBPHYT_RS30425 and BPHYT_RS30430 are separated by 119 nucleotidesBPHYT_RS30430 and BPHYT_RS30435 overlap by 4 nucleotides BPHYT_RS30420: BPHYT_RS30420 - transcriptional regulator, at 2,381,600 to 2,384,536 _RS30420 BPHYT_RS30425: BPHYT_RS30425 - LysR family transcriptional regulator, at 2,384,579 to 2,385,481 _RS30425 BPHYT_RS30430: BPHYT_RS30430 - transketolase, at 2,385,601 to 2,386,446 _RS30430 BPHYT_RS30435: BPHYT_RS30435 - transketolase, at 2,386,443 to 2,387,441 _RS30435 Position (kb) 2384 2385 2386Strain fitness (log2 ratio) -1 0 1 2at 2383.841 kb on + strand, within BPHYT_RS30420at 2384.509 kb on + strandat 2385.268 kb on - strand, within BPHYT_RS30425at 2385.498 kb on + strandat 2385.541 kb on + strandat 2385.838 kb on + strand, within BPHYT_RS30430at 2385.934 kb on + strand, within BPHYT_RS30430

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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2,383,841 + BPHYT_RS30420 0.76 -0.1
2,384,509 + +0.3
2,385,268 - BPHYT_RS30425 0.76 +1.2
2,385,498 + +2.2
2,385,541 + +0.9
2,385,838 + BPHYT_RS30430 0.28 -0.1
2,385,934 + BPHYT_RS30430 0.39 +0.4

Or see this region's nucleotide sequence