Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28865

Experiment: No vitamins t1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS28855 and BPHYT_RS28860 are separated by 137 nucleotidesBPHYT_RS28860 and BPHYT_RS28865 are separated by 20 nucleotidesBPHYT_RS28865 and BPHYT_RS28870 are separated by 73 nucleotidesBPHYT_RS28870 and BPHYT_RS28875 are separated by 180 nucleotides BPHYT_RS28855: BPHYT_RS28855 - LysR family transcriptional regulator, at 2,024,430 to 2,025,335 _RS28855 BPHYT_RS28860: BPHYT_RS28860 - haloacid dehalogenase, at 2,025,473 to 2,026,144 _RS28860 BPHYT_RS28865: BPHYT_RS28865 - alanine racemase, at 2,026,165 to 2,027,304 _RS28865 BPHYT_RS28870: BPHYT_RS28870 - MarR family transcriptional regulator, at 2,027,378 to 2,027,785 _RS28870 BPHYT_RS28875: BPHYT_RS28875 - 5-oxo-1,2,5-tricarboxylic-3-penten acid decarboxylase, at 2,027,966 to 2,028,739 _RS28875 Position (kb) 2026 2027 2028Strain fitness (log2 ratio) -1 0 1at 2025.406 kb on - strandat 2025.436 kb on - strandat 2026.017 kb on - strand, within BPHYT_RS28860at 2027.094 kb on - strand, within BPHYT_RS28865at 2027.511 kb on - strand, within BPHYT_RS28870at 2027.865 kb on + strandat 2027.911 kb on + strandat 2028.052 kb on - strand, within BPHYT_RS28875at 2028.096 kb on - strand, within BPHYT_RS28875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
remove
2,025,406 - -1.6
2,025,436 - -0.3
2,026,017 - BPHYT_RS28860 0.81 -1.3
2,027,094 - BPHYT_RS28865 0.81 +0.8
2,027,511 - BPHYT_RS28870 0.33 -1.0
2,027,865 + +0.2
2,027,911 + -1.4
2,028,052 - BPHYT_RS28875 0.11 +0.2
2,028,096 - BPHYT_RS28875 0.17 +0.4

Or see this region's nucleotide sequence