Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28470

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28465 and BPHYT_RS28470 are separated by 143 nucleotidesBPHYT_RS28470 and BPHYT_RS28475 are separated by 102 nucleotides BPHYT_RS28465: BPHYT_RS28465 - sugar MFS transporter, at 1,940,076 to 1,941,413 _RS28465 BPHYT_RS28470: BPHYT_RS28470 - hypothetical protein, at 1,941,557 to 1,942,255 _RS28470 BPHYT_RS28475: BPHYT_RS28475 - porin, at 1,942,358 to 1,943,524 _RS28475 Position (kb) 1941 1942 1943Strain fitness (log2 ratio) -2 -1 0 1at 1940.630 kb on - strand, within BPHYT_RS28465at 1941.035 kb on - strand, within BPHYT_RS28465at 1941.368 kb on + strandat 1941.559 kb on - strandat 1941.876 kb on + strand, within BPHYT_RS28470at 1942.135 kb on - strand, within BPHYT_RS28470at 1942.549 kb on - strand, within BPHYT_RS28475at 1942.587 kb on + strand, within BPHYT_RS28475at 1942.588 kb on - strand, within BPHYT_RS28475at 1942.762 kb on - strand, within BPHYT_RS28475at 1942.956 kb on + strand, within BPHYT_RS28475at 1942.957 kb on - strand, within BPHYT_RS28475at 1942.999 kb on + strand, within BPHYT_RS28475at 1943.000 kb on - strand, within BPHYT_RS28475at 1943.029 kb on - strand, within BPHYT_RS28475at 1943.029 kb on - strand, within BPHYT_RS28475at 1943.151 kb on + strand, within BPHYT_RS28475at 1943.152 kb on - strand, within BPHYT_RS28475at 1943.214 kb on - strand, within BPHYT_RS28475at 1943.217 kb on + strand, within BPHYT_RS28475at 1943.218 kb on - strand, within BPHYT_RS28475

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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1,940,630 - BPHYT_RS28465 0.41 -0.5
1,941,035 - BPHYT_RS28465 0.72 -2.2
1,941,368 + +0.6
1,941,559 - +0.1
1,941,876 + BPHYT_RS28470 0.46 -2.2
1,942,135 - BPHYT_RS28470 0.83 -1.6
1,942,549 - BPHYT_RS28475 0.16 -0.1
1,942,587 + BPHYT_RS28475 0.20 -0.1
1,942,588 - BPHYT_RS28475 0.20 +0.4
1,942,762 - BPHYT_RS28475 0.35 +0.4
1,942,956 + BPHYT_RS28475 0.51 +0.2
1,942,957 - BPHYT_RS28475 0.51 -1.1
1,942,999 + BPHYT_RS28475 0.55 -0.4
1,943,000 - BPHYT_RS28475 0.55 -1.7
1,943,029 - BPHYT_RS28475 0.57 -0.1
1,943,029 - BPHYT_RS28475 0.57 +0.2
1,943,151 + BPHYT_RS28475 0.68 +0.3
1,943,152 - BPHYT_RS28475 0.68 -0.6
1,943,214 - BPHYT_RS28475 0.73 +0.4
1,943,217 + BPHYT_RS28475 0.74 +0.8
1,943,218 - BPHYT_RS28475 0.74 +0.5

Or see this region's nucleotide sequence