Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27830

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27820 and BPHYT_RS27825 are separated by 1 nucleotidesBPHYT_RS27825 and BPHYT_RS27830 are separated by 138 nucleotidesBPHYT_RS27830 and BPHYT_RS27835 are separated by 352 nucleotides BPHYT_RS27820: BPHYT_RS27820 - membrane protein, at 1,804,574 to 1,805,005 _RS27820 BPHYT_RS27825: BPHYT_RS27825 - hypothetical protein, at 1,805,007 to 1,805,441 _RS27825 BPHYT_RS27830: BPHYT_RS27830 - universal stress protein A, at 1,805,580 to 1,806,533 _RS27830 BPHYT_RS27835: BPHYT_RS27835 - polysaccharide deacetylase, at 1,806,886 to 1,807,734 _RS27835 Position (kb) 1805 1806 1807Strain fitness (log2 ratio) -1 0 1at 1805.499 kb on + strandat 1805.500 kb on - strandat 1805.500 kb on - strandat 1805.913 kb on + strand, within BPHYT_RS27830at 1805.920 kb on + strand, within BPHYT_RS27830at 1806.047 kb on - strand, within BPHYT_RS27830at 1806.437 kb on - strand, within BPHYT_RS27830at 1806.625 kb on + strandat 1807.280 kb on - strand, within BPHYT_RS27835at 1807.352 kb on + strand, within BPHYT_RS27835at 1807.376 kb on - strand, within BPHYT_RS27835at 1807.376 kb on - strand, within BPHYT_RS27835

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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1,805,499 + -0.4
1,805,500 - +0.9
1,805,500 - -0.5
1,805,913 + BPHYT_RS27830 0.35 -1.2
1,805,920 + BPHYT_RS27830 0.36 -0.6
1,806,047 - BPHYT_RS27830 0.49 -0.7
1,806,437 - BPHYT_RS27830 0.90 -1.0
1,806,625 + +1.0
1,807,280 - BPHYT_RS27835 0.46 +0.1
1,807,352 + BPHYT_RS27835 0.55 -0.9
1,807,376 - BPHYT_RS27835 0.58 +0.2
1,807,376 - BPHYT_RS27835 0.58 -0.8

Or see this region's nucleotide sequence