Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25645

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25640 and BPHYT_RS25645 are separated by 91 nucleotidesBPHYT_RS25645 and BPHYT_RS25650 overlap by 4 nucleotides BPHYT_RS25640: BPHYT_RS25640 - MFS transporter, at 1,324,884 to 1,326,218 _RS25640 BPHYT_RS25645: BPHYT_RS25645 - dehydrogenase, at 1,326,310 to 1,327,203 _RS25645 BPHYT_RS25650: BPHYT_RS25650 - dihydroxy-acid dehydratase, at 1,327,200 to 1,328,966 _RS25650 Position (kb) 1326 1327 1328Strain fitness (log2 ratio) -1 0 1at 1325.670 kb on + strand, within BPHYT_RS25640at 1325.671 kb on - strand, within BPHYT_RS25640at 1325.774 kb on - strand, within BPHYT_RS25640at 1326.244 kb on + strandat 1326.245 kb on - strandat 1326.246 kb on + strandat 1326.433 kb on - strand, within BPHYT_RS25645at 1327.003 kb on + strand, within BPHYT_RS25645at 1327.422 kb on - strand, within BPHYT_RS25650

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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1,325,670 + BPHYT_RS25640 0.59 -0.8
1,325,671 - BPHYT_RS25640 0.59 +0.2
1,325,774 - BPHYT_RS25640 0.67 +1.4
1,326,244 + -0.4
1,326,245 - +0.9
1,326,246 + +0.6
1,326,433 - BPHYT_RS25645 0.14 -1.4
1,327,003 + BPHYT_RS25645 0.78 -0.6
1,327,422 - BPHYT_RS25650 0.13 -0.3

Or see this region's nucleotide sequence